Wall clock time and date at job start Tue Mar 31 2020 10:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.46830 * 2 1 4 4 H 1.08998 * 109.47296 * 54.37386 * 3 2 1 5 5 C 1.53000 * 109.46883 * 294.37393 * 3 2 1 6 6 N 1.46500 * 109.47130 * 174.37730 * 3 2 1 7 7 N 1.28446 * 125.19371 * 64.99873 * 6 3 2 8 8 C 1.30859 * 110.93057 * 179.97438 * 7 6 3 9 9 C 1.39682 * 107.86103 * 0.02562 * 8 7 6 10 10 C 1.36604 * 125.18971 * 245.00337 * 6 3 2 11 11 C 1.47160 * 126.88129 * 359.97438 * 10 6 3 12 12 O 1.21632 * 120.00403 * 350.28997 * 11 10 6 13 13 N 1.34780 * 119.99799 * 170.28441 * 11 10 6 14 14 C 1.46495 * 120.00117 * 181.52828 * 13 11 10 15 15 C 1.50705 * 109.47262 * 89.99958 * 14 13 11 16 16 H 1.07996 * 119.99647 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00011 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00004 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99985 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47048 * 90.00222 * 19 17 15 21 21 H 1.48496 * 109.47054 * 210.00012 * 19 17 15 22 22 H 1.48503 * 109.47099 * 330.00440 * 19 17 15 23 23 C 1.46501 * 119.99893 * 1.52846 * 13 11 10 24 24 C 1.52994 * 109.47332 * 82.11572 * 23 13 11 25 25 O 1.42902 * 109.47274 * 64.90104 * 24 23 13 26 26 C 1.42896 * 114.00097 * 179.97438 * 25 24 23 27 27 H 1.08993 * 109.47415 * 295.51420 * 1 2 3 28 28 H 1.08996 * 109.47370 * 55.51935 * 1 2 3 29 29 H 1.09012 * 109.46618 * 175.51325 * 1 2 3 30 30 H 1.08996 * 109.47629 * 240.00171 * 2 1 3 31 31 H 1.09002 * 109.47583 * 119.99711 * 2 1 3 32 32 H 1.09003 * 109.47141 * 180.02562 * 5 3 2 33 33 H 1.09000 * 109.47591 * 299.99804 * 5 3 2 34 34 H 1.09002 * 109.47220 * 60.00284 * 5 3 2 35 35 H 1.07998 * 126.06946 * 180.26101 * 8 7 6 36 36 H 1.07994 * 127.31770 * 179.97438 * 9 8 7 37 37 H 1.09007 * 109.47335 * 210.00316 * 14 13 11 38 38 H 1.08999 * 109.47025 * 330.00015 * 14 13 11 39 39 H 0.97007 * 119.99776 * 180.02562 * 18 17 15 40 40 H 1.09005 * 109.46957 * 202.11634 * 23 13 11 41 41 H 1.09001 * 109.46970 * 322.10946 * 23 13 11 42 42 H 1.09004 * 109.47245 * 184.90469 * 24 23 13 43 43 H 1.09003 * 109.47099 * 304.90413 * 24 23 13 44 44 H 1.09008 * 109.47055 * 60.00361 * 26 25 24 45 45 H 1.09001 * 109.47390 * 180.02562 * 26 25 24 46 46 H 1.09004 * 109.47559 * 300.00718 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5966 1.9846 0.8353 5 6 1.6486 2.1217 -1.3139 6 7 3.4986 1.4448 0.1353 7 7 4.3230 0.9715 -0.7285 8 6 5.5591 1.1197 -0.3253 9 6 5.5305 1.7498 0.9210 10 6 4.1897 1.9506 1.1996 11 6 3.6223 2.5831 2.4011 12 8 2.4380 2.8573 2.4424 13 7 4.4150 2.8586 3.4558 14 6 3.8439 3.4575 4.6646 15 6 3.3998 2.3663 5.6043 16 1 3.5296 1.3303 5.3285 17 6 2.8269 2.6906 6.8158 18 7 2.4399 1.7383 7.6361 19 14 2.6018 4.4827 7.2926 20 1 1.2765 4.9579 6.8203 21 1 2.6776 4.6152 8.7697 22 1 3.6724 5.2997 6.6666 23 6 5.8477 2.5590 3.3933 24 6 6.5734 3.6886 2.6598 25 8 6.4701 4.8940 3.4202 26 6 7.1187 6.0171 2.8203 27 1 -0.3634 0.4426 0.9274 28 1 -0.3634 0.5818 -0.8471 29 1 -0.3633 -1.0247 -0.0804 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 2.0123 3.1493 -1.3142 33 1 2.0919 1.5797 -2.1493 34 1 0.5632 2.1201 -1.4147 35 1 6.4443 0.8131 -0.8626 36 1 6.3751 2.0222 1.5365 37 1 4.5968 4.0750 5.1547 38 1 2.9874 4.0751 4.3943 39 1 2.0364 1.9666 8.4883 40 1 6.2444 2.4687 4.4046 41 1 5.9998 1.6216 2.8583 42 1 7.6241 3.4256 2.5365 43 1 6.1187 3.8368 1.6803 44 1 6.6756 6.2138 1.8439 45 1 6.9950 6.8919 3.4587 46 1 8.1807 5.8023 2.7007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650534321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:19:23 Heat of formation + Delta-G solvation = 21.571652 kcal Electronic energy + Delta-G solvation = -27209.184411 eV Core-core repulsion = 23523.262948 eV Total energy + Delta-G solvation = -3685.921463 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.45623 -39.11895 -37.67016 -36.49325 -35.11266 -32.82762 -31.50317 -31.03924 -29.67954 -28.86428 -27.70106 -26.22166 -24.86232 -23.54349 -22.73857 -22.15479 -21.52294 -20.00157 -18.77495 -17.12683 -16.89206 -16.69080 -15.80321 -15.70001 -15.61374 -15.17693 -15.03637 -14.86107 -14.21670 -14.14005 -13.87349 -13.71412 -13.32351 -13.00719 -12.66019 -12.45366 -12.28502 -12.15003 -11.99803 -11.82229 -11.70877 -11.57738 -11.52463 -11.06407 -11.00758 -10.86101 -10.79714 -10.50487 -10.29587 -10.12362 -9.58939 -9.53387 -9.22469 -8.98769 -8.75060 -8.56324 -7.79865 -6.06872 -4.05682 1.59958 2.56451 2.78712 3.32562 3.38448 3.42487 3.64359 3.75848 3.90906 4.42758 4.52995 4.71042 4.80654 4.94292 5.15140 5.17143 5.26978 5.28173 5.31294 5.33301 5.37482 5.40714 5.44633 5.46404 5.49580 5.56284 5.67096 5.72258 5.75315 5.83263 5.86482 5.88988 6.02470 6.15938 6.20009 6.26196 6.64077 6.81147 6.96033 6.99083 7.25724 7.28658 7.62472 8.09443 8.28423 8.46089 8.77375 8.96217 9.53276 11.06289 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.011001 B = 0.005638 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2544.590588 B = 4965.381976 C = 6675.348104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.128 3.872 4 H 0.140 0.860 5 C -0.156 4.156 6 N -0.250 5.250 7 N -0.284 5.284 8 C -0.011 4.011 9 C -0.228 4.228 10 C -0.017 4.017 11 C 0.578 3.422 12 O -0.541 6.541 13 N -0.560 5.560 14 C 0.221 3.779 15 C -0.530 4.530 16 H 0.074 0.926 17 C 0.074 3.926 18 N -0.898 5.898 19 Si 0.873 3.127 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.262 1.262 23 C 0.089 3.911 24 C 0.033 3.967 25 O -0.376 6.376 26 C 0.032 3.968 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.181 0.819 36 H 0.177 0.823 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.099 0.901 41 H 0.106 0.894 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.037 0.963 45 H 0.083 0.917 46 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.034 1.758 -16.539 18.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.028 3.972 4 H 0.157 0.843 5 C -0.214 4.214 6 N -0.038 5.038 7 N -0.116 5.116 8 C -0.187 4.187 9 C -0.257 4.257 10 C -0.146 4.146 11 C 0.363 3.637 12 O -0.419 6.419 13 N -0.289 5.289 14 C 0.102 3.898 15 C -0.569 4.569 16 H 0.092 0.908 17 C -0.128 4.128 18 N -0.536 5.536 19 Si 0.700 3.300 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.186 1.186 23 C -0.035 4.035 24 C -0.044 4.044 25 O -0.295 6.295 26 C -0.065 4.065 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.198 0.802 36 H 0.194 0.806 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.101 0.899 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.411 1.487 -17.010 17.912 hybrid contribution 0.690 1.106 0.769 1.513 sum 6.101 2.593 -16.241 17.542 Atomic orbital electron populations 1.21786 0.94147 1.02237 1.02654 1.21823 0.96965 0.94659 1.03190 1.22189 0.73166 0.99217 1.02596 0.84290 1.22106 1.02393 1.00825 0.96027 1.45943 1.07366 1.39242 1.11235 1.73048 1.01119 1.18854 1.18590 1.23531 0.94526 1.04326 0.96341 1.23159 0.95780 1.07376 0.99351 1.21769 0.92257 1.07037 0.93581 1.16896 0.85907 0.79347 0.81513 1.90681 1.15182 1.54463 1.81620 1.47516 1.06903 1.59624 1.14907 1.19768 0.94710 0.94397 0.80973 1.21334 1.40511 0.94107 1.00911 0.90761 1.24812 0.94665 0.97264 0.96071 1.69899 1.41438 1.32206 1.10079 0.86886 0.79529 0.85843 0.77772 1.19997 1.21107 1.18611 1.22182 0.81481 0.96223 1.03575 1.23393 0.99236 0.86361 0.95450 1.88028 1.76553 1.17728 1.47181 1.22710 0.95892 0.89645 0.98248 0.91763 0.92200 0.92086 0.90998 0.91250 0.92166 0.91330 0.90221 0.80178 0.80598 0.93851 0.94557 0.92588 0.88310 0.87666 0.92335 0.92411 0.94467 0.89858 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.78 37.16 0.36 -1.31 16 2 C -0.13 -1.70 5.65 -26.73 -0.15 -1.85 16 3 C 0.13 1.92 3.02 -67.93 -0.21 1.71 16 4 H 0.14 2.44 5.35 -51.93 -0.28 2.17 16 5 C -0.16 -1.88 9.07 37.16 0.34 -1.55 16 6 N -0.25 -4.09 3.09 -50.69 -0.16 -4.25 16 7 N -0.28 -4.29 11.53 30.59 0.35 -3.94 16 8 C -0.01 -0.14 12.03 -17.43 -0.21 -0.35 16 9 C -0.23 -3.19 7.45 -38.98 -0.29 -3.48 16 10 C -0.02 -0.30 6.69 -82.06 -0.55 -0.85 16 11 C 0.58 12.21 7.55 -12.64 -0.10 12.12 16 12 O -0.54 -13.00 14.00 5.25 0.07 -12.93 16 13 N -0.56 -11.74 2.42 -176.43 -0.43 -12.17 16 14 C 0.22 5.48 4.20 -5.19 -0.02 5.46 16 15 C -0.53 -15.20 9.94 -34.44 -0.34 -15.54 16 16 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 17 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 18 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 19 Si 0.87 21.71 27.47 -169.99 -4.67 17.04 16 20 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 22 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 23 C 0.09 1.43 5.30 -4.04 -0.02 1.41 16 24 C 0.03 0.44 4.57 37.15 0.17 0.61 16 25 O -0.38 -5.92 10.48 -35.23 -0.37 -6.29 16 26 C 0.03 0.37 11.01 101.05 1.11 1.48 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.57 6.39 -51.93 -0.33 0.23 16 29 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 0.80 8.09 -51.93 -0.42 0.38 16 34 H 0.08 0.79 6.49 -51.93 -0.34 0.45 16 35 H 0.18 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.18 2.03 3.43 -52.49 -0.18 1.85 16 37 H 0.04 1.06 6.97 -51.93 -0.36 0.69 16 38 H 0.04 0.96 6.83 -51.93 -0.35 0.60 16 39 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 40 H 0.10 1.64 8.01 -51.93 -0.42 1.22 16 41 H 0.11 1.47 4.86 -51.93 -0.25 1.22 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.78 6.28 -51.93 -0.33 0.45 16 44 H 0.04 0.40 8.14 -51.92 -0.42 -0.02 16 45 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 46 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 LS Contribution 365.86 15.07 5.51 5.51 Total: -1.00 -34.64 365.86 -5.99 -40.63 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -7.08 Total: 3.35 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 0.00 Total: -0.08 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.54 Total: -47.23 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.30 Total: -19.22 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.64 -5.99 -40.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650534321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.202 kcal (2) G-P(sol) polarization free energy of solvation -34.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds