Wall clock time and date at job start Tue Mar 31 2020 09:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47505 * 2 1 4 4 C 1.50704 * 109.47121 * 239.99720 * 2 1 3 5 5 O 1.21283 * 120.00218 * 240.00192 * 4 2 1 6 6 N 1.34780 * 119.99465 * 60.00368 * 4 2 1 7 7 C 1.46505 * 119.99662 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.46975 * 180.02562 * 7 6 4 9 9 C 1.53001 * 109.47166 * 179.97438 * 8 7 6 10 10 C 1.50696 * 109.47242 * 179.97438 * 9 8 7 11 11 H 1.08008 * 120.00178 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00225 * 180.02562 * 10 9 8 13 13 N 1.31519 * 120.00173 * 359.97438 * 12 10 9 14 14 Si 1.86800 * 120.00443 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47055 * 59.99749 * 14 12 10 16 16 H 1.48495 * 109.47483 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47125 * 299.99932 * 14 12 10 18 18 N 1.46506 * 109.47021 * 120.00396 * 2 1 3 19 19 N 1.29014 * 126.43934 * 59.68428 * 18 2 1 20 20 N 1.28741 * 108.81041 * 179.83636 * 19 18 2 21 21 N 1.28843 * 109.39532 * 0.43987 * 20 19 18 22 22 C 1.31074 * 107.99080 * 359.73388 * 21 20 19 23 23 C 1.50697 * 126.66367 * 179.97438 * 22 21 20 24 24 C 1.52995 * 109.47130 * 240.04313 * 23 22 21 25 25 C 1.53004 * 109.46699 * 0.03827 * 23 22 21 26 26 C 1.53000 * 109.47268 * 120.03979 * 23 22 21 27 27 H 1.09002 * 109.46917 * 59.99707 * 1 2 3 28 28 H 1.08995 * 109.47505 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47000 * 300.00487 * 1 2 3 30 30 H 0.97000 * 120.00110 * 0.02562 * 6 4 2 31 31 H 1.08998 * 109.46767 * 299.99738 * 7 6 4 32 32 H 1.08995 * 109.47001 * 60.00116 * 7 6 4 33 33 H 1.09002 * 109.46897 * 300.00133 * 8 7 6 34 34 H 1.08995 * 109.47372 * 59.99528 * 8 7 6 35 35 H 1.08994 * 109.47054 * 299.99891 * 9 8 7 36 36 H 1.09005 * 109.46947 * 59.99982 * 9 8 7 37 37 H 0.96989 * 120.00500 * 180.02562 * 13 12 10 38 38 H 1.08999 * 109.47455 * 59.99936 * 24 23 22 39 39 H 1.09004 * 109.47309 * 179.97438 * 24 23 22 40 40 H 1.09003 * 109.47605 * 299.99694 * 24 23 22 41 41 H 1.09005 * 109.46983 * 60.00297 * 25 23 22 42 42 H 1.09004 * 109.46780 * 179.97438 * 25 23 22 43 43 H 1.08993 * 109.47301 * 300.00509 * 25 23 22 44 44 H 1.08995 * 109.47081 * 60.00161 * 26 23 22 45 45 H 1.09002 * 109.46755 * 180.02562 * 26 23 22 46 46 H 1.08996 * 109.46938 * 300.00203 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6966 -1.1192 6 7 1.7067 -0.2499 -2.4546 7 6 2.1955 -0.9403 -3.6508 8 6 1.6860 -0.2187 -4.9000 9 6 2.1969 -0.9392 -6.1492 10 6 1.6946 -0.2289 -7.3797 11 1 1.0733 0.6491 -7.2806 12 6 2.0280 -0.6996 -8.6319 13 7 2.7849 -1.7683 -8.7527 14 14 1.4058 0.1813 -10.1571 15 1 1.9009 1.5814 -10.1567 16 1 1.9017 -0.5180 -11.3696 17 1 -0.0792 0.1814 -10.1576 18 7 2.0183 -0.6907 1.1962 19 7 1.7798 -1.9152 1.5250 20 7 2.3771 -2.1704 2.6365 21 7 2.9975 -1.1160 3.0408 22 6 2.7952 -0.1652 2.1616 23 6 3.3285 1.2430 2.2203 24 6 2.1599 2.2304 2.2415 25 6 4.1672 1.4182 3.4880 26 6 4.1997 1.5102 0.9913 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.1494 0.5390 -2.5435 31 1 3.2855 -0.9398 -3.6506 32 1 1.8325 -1.9680 -3.6509 33 1 0.5960 -0.2187 -4.9003 34 1 2.0492 0.8090 -4.8995 35 1 3.2869 -0.9388 -6.1486 36 1 1.8339 -1.9670 -6.1499 37 1 3.0198 -2.0993 -9.6336 38 1 1.5393 2.0401 3.1171 39 1 2.5456 3.2490 2.2845 40 1 1.5623 2.1056 1.3385 41 1 4.9997 0.7148 3.4729 42 1 4.5533 2.4367 3.5303 43 1 3.5465 1.2278 4.3635 44 1 3.6022 1.3854 0.0883 45 1 4.5858 2.5287 1.0342 46 1 5.0322 0.8068 0.9763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351078310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:53 Heat of formation + Delta-G solvation = 57.593427 kcal Electronic energy + Delta-G solvation = -26002.942220 eV Core-core repulsion = 22350.875529 eV Total energy + Delta-G solvation = -3652.066691 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.191 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.37950 -40.12711 -37.87286 -36.20479 -35.56936 -33.58622 -32.37895 -31.58158 -30.89836 -27.98320 -27.95584 -27.03481 -25.75901 -24.11482 -23.83015 -22.62209 -20.98400 -20.56438 -20.08886 -18.06036 -17.49941 -16.75367 -16.44781 -16.12289 -15.85207 -15.37279 -14.81707 -14.61288 -14.50681 -14.33721 -13.96052 -13.59566 -13.18047 -13.09913 -12.96660 -12.84685 -12.55115 -12.37532 -12.27646 -12.23275 -12.00363 -11.92357 -11.87349 -11.65069 -11.41950 -11.19943 -11.09017 -10.95865 -10.87007 -10.70809 -10.26962 -10.02367 -9.99880 -9.51481 -9.22718 -9.10892 -8.44472 -6.08860 -4.12891 1.08651 1.58983 2.16257 2.23767 2.87870 3.26483 3.32095 3.33221 3.45004 3.79503 3.95379 4.07487 4.22803 4.28379 4.37938 4.48443 4.67685 4.83744 4.92660 4.98470 5.12701 5.17516 5.20544 5.26883 5.28705 5.37421 5.40874 5.49223 5.50610 5.51068 5.59302 5.63461 5.69763 5.87877 5.95654 5.98177 6.15525 6.43035 6.61697 6.85091 7.27662 7.53762 7.65154 7.88311 7.92871 8.28784 8.53782 8.93447 9.51836 11.02334 Molecular weight = 309.19amu Principal moments of inertia in cm(-1) A = 0.025405 B = 0.002490 C = 0.002423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.891427 B =11242.117753 C =11555.410868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 H 0.144 0.856 4 C 0.500 3.500 5 O -0.511 6.511 6 N -0.714 5.714 7 C 0.116 3.884 8 C -0.120 4.120 9 C 0.024 3.976 10 C -0.525 4.525 11 H 0.055 0.945 12 C 0.058 3.942 13 N -0.893 5.893 14 Si 0.894 3.106 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 N -0.287 5.287 19 N -0.065 5.065 20 N -0.082 5.082 21 N -0.301 5.301 22 C 0.193 3.807 23 C 0.013 3.987 24 C -0.151 4.151 25 C -0.131 4.131 26 C -0.152 4.152 27 H 0.096 0.904 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.400 0.600 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.082 0.918 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.732 12.635 22.528 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.008 3.992 3 H 0.161 0.839 4 C 0.281 3.719 5 O -0.386 6.386 6 N -0.366 5.366 7 C -0.006 4.006 8 C -0.158 4.158 9 C -0.013 4.013 10 C -0.564 4.564 11 H 0.073 0.927 12 C -0.144 4.144 13 N -0.532 5.532 14 Si 0.721 3.279 15 H -0.202 1.202 16 H -0.212 1.212 17 H -0.202 1.202 18 N -0.089 5.089 19 N -0.050 5.050 20 N -0.075 5.075 21 N -0.149 5.149 22 C -0.086 4.086 23 C 0.010 3.990 24 C -0.209 4.209 25 C -0.189 4.189 26 C -0.210 4.210 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.235 0.765 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.038 0.962 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.280 10.403 22.984 25.331 hybrid contribution -0.539 1.522 -1.582 2.261 sum -2.819 11.924 21.402 24.661 Atomic orbital electron populations 1.22194 0.89287 1.05806 1.04813 1.21991 0.98529 0.97185 0.81449 0.83886 1.20060 0.81849 0.85485 0.84458 1.90842 1.36675 1.24970 1.86084 1.46106 1.53078 1.32003 1.05437 1.21779 0.99493 0.96783 0.82515 1.21905 1.00336 0.99524 0.94054 1.19023 0.96692 0.95744 0.89886 1.21132 1.31907 1.12448 0.90875 0.92665 1.25030 0.95101 0.95031 0.99241 1.69947 1.36489 1.22905 1.23825 0.86634 0.79179 0.79727 0.82311 1.20225 1.21228 1.20206 1.48016 1.34098 1.08840 1.17951 1.78944 1.19191 0.96244 1.10665 1.78639 1.07386 1.17891 1.03574 1.74961 1.19694 0.96552 1.23650 1.26013 0.95865 0.99623 0.87059 1.19265 0.96351 0.84144 0.99269 1.22110 0.96901 0.99269 1.02652 1.21747 0.99858 1.02431 0.94869 1.22096 0.99974 1.03709 0.95208 0.88535 0.89584 0.90184 0.76528 0.91413 0.91266 0.92517 0.92573 0.96260 0.96219 0.92767 0.91386 0.89993 0.92351 0.91324 0.91174 0.91366 0.92615 0.89952 0.91254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.06 9.30 37.16 0.35 -0.72 16 2 C 0.12 1.04 2.25 -69.08 -0.16 0.88 16 3 H 0.14 0.82 3.73 -51.93 -0.19 0.62 16 4 C 0.50 6.47 7.19 -10.98 -0.08 6.39 16 5 O -0.51 -9.33 15.89 5.55 0.09 -9.24 16 6 N -0.71 -8.32 5.45 -60.29 -0.33 -8.65 16 7 C 0.12 1.83 5.67 -4.04 -0.02 1.81 16 8 C -0.12 -2.12 5.27 -26.73 -0.14 -2.26 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 10 C -0.53 -14.09 9.11 -34.44 -0.31 -14.41 16 11 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 12 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 13 N -0.89 -26.24 13.29 55.43 0.74 -25.50 16 14 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 15 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 16 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 18 N -0.29 -3.52 2.75 -52.93 -0.15 -3.66 16 19 N -0.07 -1.03 12.43 60.35 0.75 -0.28 16 20 N -0.08 -1.35 13.43 60.35 0.81 -0.54 16 21 N -0.30 -4.34 11.71 32.70 0.38 -3.96 16 22 C 0.19 2.20 6.40 -155.43 -1.00 1.21 16 23 C 0.01 0.10 0.75 -155.66 -0.12 -0.02 16 24 C -0.15 -0.68 8.31 37.15 0.31 -0.37 16 25 C -0.13 -0.85 8.00 37.16 0.30 -0.55 16 26 C -0.15 -1.02 8.31 37.16 0.31 -0.71 16 27 H 0.10 0.38 7.56 -51.93 -0.39 -0.01 16 28 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.40 3.19 7.89 -40.82 -0.32 2.87 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.06 0.21 5.58 -51.93 -0.29 -0.08 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.38 5.58 -51.93 -0.29 0.09 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 LS Contribution 375.33 15.07 5.66 5.66 Total: -1.00 -35.71 375.33 -5.24 -40.95 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -7.37 Total: -3.84 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -0.80 Total: -6.79 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: 2.21 Total: -42.59 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.09 Total: -9.24 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.71 -5.24 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351078310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.545 kcal (2) G-P(sol) polarization free energy of solvation -35.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds