Wall clock time and date at job start Tue Mar 31 2020 10:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47094 * 2 1 4 4 N 1.28525 * 124.44292 * 90.02027 * 3 2 1 5 5 C 1.31137 * 109.05849 * 179.97438 * 4 3 2 6 6 C 1.40921 * 105.77532 * 0.02562 * 5 4 3 7 7 C 1.47801 * 127.23622 * 179.97438 * 6 5 4 8 8 O 1.21563 * 119.99921 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00087 * 179.72915 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27945 * 9 7 6 11 11 C 1.53004 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46745 * 179.97438 * 12 11 10 14 14 C 1.53009 * 109.46928 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46928 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.46685 * 180.02562 * 15 14 13 17 17 C 1.36943 * 119.99781 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99788 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99651 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99346 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00174 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 90.00181 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00039 * 21 19 17 24 24 H 1.48499 * 109.47134 * 329.99661 * 21 19 17 25 25 N 1.28588 * 124.44518 * 270.33511 * 3 2 1 26 26 H 1.09005 * 109.47015 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47436 * 300.00014 * 1 2 3 28 28 H 1.09005 * 109.47314 * 60.00159 * 1 2 3 29 29 H 1.08996 * 109.47436 * 239.99986 * 2 1 3 30 30 H 1.09005 * 109.47314 * 119.99841 * 2 1 3 31 31 H 1.07998 * 127.10685 * 180.02562 * 5 4 3 32 32 H 0.97000 * 119.99736 * 0.27219 * 9 7 6 33 33 H 1.08992 * 109.46803 * 299.99362 * 10 9 7 34 34 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 35 35 H 1.09007 * 109.46621 * 299.99773 * 11 10 9 36 36 H 1.08997 * 109.46991 * 59.99522 * 11 10 9 37 37 H 1.08998 * 109.46983 * 299.99930 * 12 11 10 38 38 H 1.08997 * 109.47123 * 59.99717 * 12 11 10 39 39 H 1.08998 * 109.47651 * 299.99922 * 13 12 11 40 40 H 1.09005 * 109.47059 * 60.00447 * 13 12 11 41 41 H 1.08998 * 109.47219 * 300.00588 * 14 13 12 42 42 H 1.08997 * 109.46704 * 60.00263 * 14 13 12 43 43 H 1.08998 * 109.47651 * 300.00323 * 15 14 13 44 44 H 1.09005 * 109.47059 * 60.00848 * 15 14 13 45 45 H 0.97000 * 120.00410 * 0.02562 * 16 15 14 46 46 H 0.97008 * 119.99955 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2609 2.0664 1.0599 5 6 2.6828 3.2584 0.7120 6 6 2.6853 3.2677 -0.6971 7 6 3.0791 4.3830 -1.5834 8 8 3.4524 5.4365 -1.1054 9 7 3.0301 4.2299 -2.9216 10 6 3.4264 5.3334 -3.8000 11 6 3.2791 4.9009 -5.2603 12 6 3.6923 6.0535 -6.1777 13 6 3.5456 5.6207 -7.6378 14 6 3.9582 6.7736 -8.5553 15 6 3.8109 6.3411 -10.0155 16 7 4.2066 7.4447 -10.8939 17 6 4.1567 7.2893 -12.2536 18 1 3.8253 6.3532 -12.6782 19 6 4.5321 8.3349 -13.0859 20 7 4.4836 8.1856 -14.3927 21 14 5.1060 9.9536 -12.3513 22 1 6.5770 9.9128 -12.1519 23 1 4.7622 11.0654 -13.2738 24 1 4.4350 10.1696 -11.0443 25 7 2.2548 2.0690 -1.0604 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.9690 4.0658 1.3696 32 1 2.7326 3.3891 -3.3030 33 1 2.7879 6.1961 -3.6102 34 1 4.4649 5.5995 -3.6032 35 1 3.9179 4.0382 -5.4498 36 1 2.2407 4.6344 -5.4573 37 1 3.0533 6.9159 -5.9880 38 1 4.7306 6.3204 -5.9807 39 1 4.1849 4.7585 -7.8273 40 1 2.5074 5.3537 -7.8351 41 1 3.3186 7.6356 -8.3658 42 1 4.9963 7.0411 -8.3582 43 1 4.4502 5.4789 -10.2054 44 1 2.7726 6.0739 -10.2123 45 1 4.5039 8.2856 -10.5125 46 1 4.7456 8.9163 -14.9744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178400310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:58 Heat of formation + Delta-G solvation = 60.181327 kcal Electronic energy + Delta-G solvation = -23536.116673 eV Core-core repulsion = 19884.162203 eV Total energy + Delta-G solvation = -3651.954471 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.191 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.15986 -39.86150 -36.93400 -35.58986 -35.43372 -34.11971 -33.15974 -31.92905 -31.05887 -30.27659 -27.46582 -25.65859 -24.55613 -23.53121 -22.10584 -22.03990 -21.29202 -20.83832 -20.54184 -18.34458 -17.59862 -17.43052 -17.11871 -16.27699 -16.21782 -15.58782 -15.30754 -14.85290 -14.60978 -14.36617 -14.33925 -13.88046 -13.50014 -13.24908 -13.02881 -12.90499 -12.68826 -12.46322 -12.37303 -12.14820 -11.81472 -11.62483 -11.52184 -11.44575 -11.00614 -10.94235 -10.85590 -10.77531 -10.65746 -10.35284 -10.26276 -10.05785 -9.98700 -9.55657 -9.44719 -8.85572 -7.18803 -5.73834 -3.08765 0.81857 1.47236 1.58073 2.68533 2.85352 3.40302 3.41017 3.43409 3.47693 4.09863 4.10282 4.38390 4.39192 4.49590 4.58475 4.62407 4.71085 4.83012 4.90113 4.96049 5.15476 5.16723 5.26467 5.32158 5.33376 5.48282 5.50625 5.56071 5.59387 5.66498 5.80932 5.88634 6.00073 6.02558 6.04443 6.14195 6.23506 6.26894 6.40374 6.81402 6.85561 7.02805 7.60410 7.75618 8.03437 8.45637 9.25409 9.98060 10.18484 11.44761 Molecular weight = 309.19amu Principal moments of inertia in cm(-1) A = 0.031835 B = 0.001531 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.313306 B =18278.916252 C =19034.427421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.131 3.869 3 N -0.139 5.139 4 N -0.289 5.289 5 C 0.035 3.965 6 C -0.048 4.048 7 C 0.608 3.392 8 O -0.526 6.526 9 N -0.714 5.714 10 C 0.117 3.883 11 C -0.131 4.131 12 C -0.116 4.116 13 C -0.114 4.114 14 C -0.131 4.131 15 C 0.156 3.844 16 N -0.759 5.759 17 C -0.244 4.244 18 H 0.089 0.911 19 C 0.002 3.998 20 N -0.936 5.936 21 Si 0.886 3.114 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 N -0.250 5.250 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.209 0.791 32 H 0.407 0.593 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.025 0.975 44 H 0.024 0.976 45 H 0.360 0.640 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.950 -17.780 34.575 39.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.012 3.988 3 N -0.043 5.043 4 N -0.129 5.129 5 C -0.148 4.148 6 C -0.211 4.211 7 C 0.391 3.609 8 O -0.400 6.400 9 N -0.366 5.366 10 C -0.006 4.006 11 C -0.169 4.169 12 C -0.154 4.154 13 C -0.152 4.152 14 C -0.169 4.169 15 C 0.029 3.971 16 N -0.404 5.404 17 C -0.374 4.374 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.716 3.284 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 N -0.098 5.098 26 H 0.108 0.892 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.225 0.775 32 H 0.242 0.758 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.042 0.958 45 H 0.193 0.807 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.167 -18.394 34.674 39.900 hybrid contribution 0.548 1.590 0.193 1.693 sum -6.618 -16.804 34.867 39.267 Atomic orbital electron populations 1.22201 0.92688 1.04281 1.03885 1.22157 0.96379 0.73898 1.06323 1.48309 1.43401 1.13463 0.99091 1.74041 1.17689 1.05581 1.15554 1.24880 1.01074 0.95223 0.93647 1.23071 1.09432 0.93689 0.94928 1.16620 0.77713 0.84944 0.81589 1.90840 1.47077 1.26723 1.75391 1.45879 1.67221 1.18184 1.05305 1.21536 1.01163 0.89085 0.88810 1.21834 1.02604 0.99825 0.92673 1.21515 1.01967 0.97384 0.94551 1.21493 1.01741 0.98647 0.93288 1.21782 1.01378 0.98051 0.95644 1.20640 0.97471 0.91278 0.87732 1.42749 1.81339 1.12722 1.03595 1.19098 1.37426 1.00358 0.80529 0.89280 1.24684 1.01602 0.97913 0.95126 1.69709 1.54545 1.32467 1.01673 0.86515 0.78787 0.84810 0.78247 1.21083 1.21725 1.20326 1.74338 1.14947 1.04473 1.16054 0.89218 0.91276 0.91210 0.86921 0.86911 0.77473 0.75769 0.90945 0.90939 0.91111 0.91125 0.91592 0.91590 0.91879 0.91897 0.92137 0.92122 0.95713 0.95762 0.80716 0.93108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.38 10.24 37.15 0.38 0.00 16 2 C 0.13 0.37 7.24 -4.05 -0.03 0.35 16 3 N -0.14 -0.99 3.94 -10.62 -0.04 -1.04 16 4 N -0.29 -2.42 12.01 30.90 0.37 -2.05 16 5 C 0.04 0.30 12.04 -16.83 -0.20 0.10 16 6 C -0.05 -0.45 7.21 -82.68 -0.60 -1.05 16 7 C 0.61 6.33 7.83 -12.35 -0.10 6.23 16 8 O -0.53 -6.99 16.95 5.31 0.09 -6.90 16 9 N -0.71 -5.96 5.55 -61.26 -0.34 -6.30 16 10 C 0.12 0.97 5.67 -4.04 -0.02 0.95 16 11 C -0.13 -0.98 5.33 -26.73 -0.14 -1.12 16 12 C -0.12 -1.07 5.21 -26.73 -0.14 -1.21 16 13 C -0.11 -1.29 5.21 -26.73 -0.14 -1.43 16 14 C -0.13 -1.96 5.33 -26.73 -0.14 -2.10 16 15 C 0.16 3.07 6.26 -4.04 -0.03 3.05 16 16 N -0.76 -18.74 5.41 -59.90 -0.32 -19.06 16 17 C -0.24 -7.15 10.47 -15.05 -0.16 -7.30 16 18 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 19 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 20 N -0.94 -29.94 13.97 55.49 0.78 -29.16 16 21 Si 0.89 22.57 27.74 -169.99 -4.71 17.86 16 22 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 23 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 24 H -0.28 -6.65 6.52 56.52 0.37 -6.28 16 25 N -0.25 -2.09 11.84 33.42 0.40 -1.70 16 26 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 27 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 28 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 30 H 0.11 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.21 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.41 2.73 8.24 -40.82 -0.34 2.39 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.36 8.64 5.53 -40.82 -0.23 8.41 16 46 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -36.26 388.30 -7.11 -43.37 By element: Atomic # 1 Polarization: 10.48 SS G_CDS: -7.76 Total: 2.71 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -1.41 Total: -3.58 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: 0.84 Total: -59.31 kcal Atomic # 8 Polarization: -6.99 SS G_CDS: 0.09 Total: -6.90 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.71 Total: 17.86 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.26 -7.11 -43.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178400310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.551 kcal (2) G-P(sol) polarization free energy of solvation -36.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds