Wall clock time and date at job start Tue Mar 31 2020 10:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46500 * 109.47094 * 2 1 4 4 N 1.28525 * 124.44292 * 90.02027 * 3 2 1 5 5 C 1.31137 * 109.05849 * 179.97438 * 4 3 2 6 6 C 1.40921 * 105.77532 * 0.02562 * 5 4 3 7 7 C 1.47801 * 127.23622 * 179.97438 * 6 5 4 8 8 O 1.21563 * 119.99921 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00087 * 179.72915 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27945 * 9 7 6 11 11 C 1.53004 * 109.46928 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46988 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46745 * 179.97438 * 12 11 10 14 14 C 1.53009 * 109.46928 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46928 * 180.02562 * 14 13 12 16 16 N 1.46504 * 109.46685 * 180.02562 * 15 14 13 17 17 C 1.36943 * 119.99781 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99788 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99651 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99346 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00174 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47118 * 90.00181 * 21 19 17 23 23 H 1.48498 * 109.47011 * 210.00039 * 21 19 17 24 24 H 1.48499 * 109.47134 * 329.99661 * 21 19 17 25 25 N 1.28588 * 124.44518 * 270.33511 * 3 2 1 26 26 H 1.09005 * 109.47015 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47436 * 300.00014 * 1 2 3 28 28 H 1.09005 * 109.47314 * 60.00159 * 1 2 3 29 29 H 1.08996 * 109.47436 * 239.99986 * 2 1 3 30 30 H 1.09005 * 109.47314 * 119.99841 * 2 1 3 31 31 H 1.07998 * 127.10685 * 180.02562 * 5 4 3 32 32 H 0.97000 * 119.99736 * 0.27219 * 9 7 6 33 33 H 1.08992 * 109.46803 * 299.99362 * 10 9 7 34 34 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 35 35 H 1.09007 * 109.46621 * 299.99773 * 11 10 9 36 36 H 1.08997 * 109.46991 * 59.99522 * 11 10 9 37 37 H 1.08998 * 109.46983 * 299.99930 * 12 11 10 38 38 H 1.08997 * 109.47123 * 59.99717 * 12 11 10 39 39 H 1.08998 * 109.47651 * 299.99922 * 13 12 11 40 40 H 1.09005 * 109.47059 * 60.00447 * 13 12 11 41 41 H 1.08998 * 109.47219 * 300.00588 * 14 13 12 42 42 H 1.08997 * 109.46704 * 60.00263 * 14 13 12 43 43 H 1.08998 * 109.47651 * 300.00323 * 15 14 13 44 44 H 1.09005 * 109.47059 * 60.00848 * 15 14 13 45 45 H 0.97000 * 120.00410 * 0.02562 * 16 15 14 46 46 H 0.97008 * 119.99955 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 7 2.2609 2.0664 1.0599 5 6 2.6828 3.2584 0.7120 6 6 2.6853 3.2677 -0.6971 7 6 3.0791 4.3830 -1.5834 8 8 3.4524 5.4365 -1.1054 9 7 3.0301 4.2299 -2.9216 10 6 3.4264 5.3334 -3.8000 11 6 3.2791 4.9009 -5.2603 12 6 3.6923 6.0535 -6.1777 13 6 3.5456 5.6207 -7.6378 14 6 3.9582 6.7736 -8.5553 15 6 3.8109 6.3411 -10.0155 16 7 4.2066 7.4447 -10.8939 17 6 4.1567 7.2893 -12.2536 18 1 3.8253 6.3532 -12.6782 19 6 4.5321 8.3349 -13.0859 20 7 4.4836 8.1856 -14.3927 21 14 5.1060 9.9536 -12.3513 22 1 6.5770 9.9128 -12.1519 23 1 4.7622 11.0654 -13.2738 24 1 4.4350 10.1696 -11.0443 25 7 2.2548 2.0690 -1.0604 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 2.9690 4.0658 1.3696 32 1 2.7326 3.3891 -3.3030 33 1 2.7879 6.1961 -3.6102 34 1 4.4649 5.5995 -3.6032 35 1 3.9179 4.0382 -5.4498 36 1 2.2407 4.6344 -5.4573 37 1 3.0533 6.9159 -5.9880 38 1 4.7306 6.3204 -5.9807 39 1 4.1849 4.7585 -7.8273 40 1 2.5074 5.3537 -7.8351 41 1 3.3186 7.6356 -8.3658 42 1 4.9963 7.0411 -8.3582 43 1 4.4502 5.4789 -10.2054 44 1 2.7726 6.0739 -10.2123 45 1 4.5039 8.2856 -10.5125 46 1 4.7456 8.9163 -14.9744 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178400310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:58 Heat of formation + Delta-G solvation = 33.704647 kcal Electronic energy + Delta-G solvation = -23537.264788 eV Core-core repulsion = 19884.162203 eV Total energy + Delta-G solvation = -3653.102586 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.191 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.74807 -40.63964 -37.97476 -36.86459 -35.83586 -35.38027 -33.96498 -33.50607 -31.96593 -31.29647 -28.63691 -26.43758 -25.43039 -24.59695 -23.36506 -22.59905 -22.23473 -22.06939 -21.29084 -19.61483 -18.92955 -18.15007 -17.69369 -17.03305 -16.97612 -16.59909 -16.26263 -16.01226 -15.79278 -15.33175 -15.24516 -14.97694 -14.88150 -14.15047 -14.13474 -13.70975 -13.49396 -13.35851 -13.12634 -13.02741 -13.00351 -12.66939 -12.46126 -12.38076 -12.10713 -12.07398 -11.90210 -11.85297 -11.80484 -11.61518 -11.56890 -11.31850 -11.27412 -10.96953 -10.58859 -10.15034 -9.30582 -8.04293 -5.38054 0.15974 0.84478 1.16162 1.37791 1.41645 1.49270 2.01557 2.10824 2.48007 2.84244 3.27022 3.57132 3.69630 3.89505 3.90549 3.91700 4.03906 4.03944 4.23082 4.25017 4.26064 4.31742 4.54335 4.61402 4.62494 4.67471 4.73821 4.78322 4.84784 4.94511 4.97849 5.00245 5.06182 5.15026 5.15753 5.29247 5.30094 5.39684 5.52452 5.54798 5.57512 5.74156 6.20306 6.34558 6.96871 7.06386 7.06977 7.83959 8.03399 9.17293 Molecular weight = 309.19amu Principal moments of inertia in cm(-1) A = 0.031835 B = 0.001531 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.313306 B =18278.916252 C =19034.427421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.118 3.882 3 N -0.132 5.132 4 N -0.299 5.299 5 C 0.027 3.973 6 C -0.068 4.068 7 C 0.608 3.392 8 O -0.562 6.562 9 N -0.704 5.704 10 C 0.119 3.881 11 C -0.120 4.120 12 C -0.112 4.112 13 C -0.107 4.107 14 C -0.120 4.120 15 C 0.149 3.851 16 N -0.763 5.763 17 C -0.242 4.242 18 H 0.054 0.946 19 C -0.065 4.065 20 N -0.984 5.984 21 Si 0.960 3.040 22 H -0.276 1.276 23 H -0.294 1.294 24 H -0.251 1.251 25 N -0.250 5.250 26 H 0.115 0.885 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.221 0.779 32 H 0.416 0.584 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.366 0.634 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.035 -18.284 36.682 41.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.001 3.999 3 N -0.037 5.037 4 N -0.139 5.139 5 C -0.156 4.156 6 C -0.229 4.229 7 C 0.392 3.608 8 O -0.439 6.439 9 N -0.355 5.355 10 C -0.004 4.004 11 C -0.158 4.158 12 C -0.150 4.150 13 C -0.145 4.145 14 C -0.158 4.158 15 C 0.023 3.977 16 N -0.408 5.408 17 C -0.373 4.373 18 H 0.072 0.928 19 C -0.257 4.257 20 N -0.635 5.635 21 Si 0.786 3.214 22 H -0.202 1.202 23 H -0.220 1.220 24 H -0.176 1.176 25 N -0.099 5.099 26 H 0.134 0.866 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.238 0.762 32 H 0.253 0.747 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.199 0.801 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -7.270 -18.943 36.813 42.034 hybrid contribution 0.505 1.552 -0.491 1.704 sum -6.765 -17.391 36.322 40.835 Atomic orbital electron populations 1.22177 0.92113 1.05575 1.02596 1.22654 0.96833 0.72156 1.08244 1.48842 1.42039 1.14323 0.98493 1.74039 1.18061 1.05700 1.16085 1.25175 1.00939 0.95733 0.93708 1.22965 1.10844 0.93956 0.95164 1.16765 0.77213 0.84722 0.82129 1.90812 1.48934 1.28115 1.76064 1.45821 1.66344 1.18581 1.04758 1.21501 1.00682 0.88921 0.89281 1.21715 1.03308 0.99356 0.91426 1.21442 1.02248 0.98021 0.93268 1.21431 1.01999 0.97305 0.93759 1.21699 1.01822 0.99472 0.92828 1.20876 0.96859 0.89952 0.89978 1.42798 1.81404 1.14316 1.02329 1.19098 1.36311 0.99042 0.82857 0.92771 1.25578 1.02378 1.02251 0.95479 1.69896 1.56257 1.33835 1.03462 0.85337 0.78574 0.79141 0.78305 1.20245 1.22011 1.17564 1.74296 1.14832 1.04243 1.16546 0.86629 0.92498 0.92458 0.85023 0.85051 0.76220 0.74701 0.91548 0.91512 0.90221 0.90268 0.91471 0.91425 0.91399 0.91465 0.91930 0.91787 0.95994 0.96098 0.80064 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.46 10.24 71.98 0.74 0.28 16 2 C 0.12 0.44 7.24 86.38 0.63 1.06 16 3 N -0.13 -1.71 3.94 -187.50 -0.74 -2.45 16 4 N -0.30 -4.75 12.01 -56.16 -0.67 -5.42 16 5 C 0.03 0.45 12.04 85.45 1.03 1.48 16 6 C -0.07 -1.24 7.21 42.24 0.30 -0.94 16 7 C 0.61 12.44 7.83 86.77 0.68 13.12 16 8 O -0.56 -15.04 16.95 -3.91 -0.07 -15.11 16 9 N -0.70 -10.94 5.55 -466.01 -2.59 -13.53 16 10 C 0.12 1.80 5.67 86.38 0.49 2.29 16 11 C -0.12 -1.49 5.33 30.60 0.16 -1.33 16 12 C -0.11 -1.76 5.21 30.59 0.16 -1.60 16 13 C -0.11 -2.15 5.21 30.60 0.16 -1.99 16 14 C -0.12 -3.34 5.33 30.60 0.16 -3.18 16 15 C 0.15 5.73 6.26 86.38 0.54 6.27 16 16 N -0.76 -36.92 5.41 -343.44 -1.86 -38.78 16 17 C -0.24 -14.33 10.47 84.03 0.88 -13.45 16 18 H 0.05 3.50 8.06 -2.91 -0.02 3.48 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 20 N -0.98 -64.22 13.97 21.65 0.30 -63.91 16 21 Si 0.96 46.20 27.74 68.60 1.90 48.10 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 24 H -0.25 -10.89 6.52 99.48 0.65 -10.25 16 25 N -0.25 -3.91 11.84 -48.17 -0.57 -4.48 16 26 H 0.12 -0.28 8.14 -2.38 -0.02 -0.30 16 27 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.06 0.32 8.14 -2.38 -0.02 0.30 16 29 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.13 0.02 8.14 -2.38 -0.02 0.00 16 31 H 0.22 2.75 8.06 -2.91 -0.02 2.73 16 32 H 0.42 4.90 8.24 -92.71 -0.76 4.14 16 33 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 36 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.07 1.31 8.14 -2.38 -0.02 1.30 16 41 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.37 16.73 5.53 -92.71 -0.51 16.22 16 46 H 0.26 15.99 8.31 -92.70 -0.77 15.22 16 Total: -1.00 -79.01 388.30 1.75 -77.26 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: -0.36 Total: 19.80 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: 6.40 Total: -1.47 kcal Atomic # 7 Polarization: -122.46 SS G_CDS: -6.13 Total: -128.58 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: -0.07 Total: -15.11 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 1.90 Total: 48.10 kcal Total: -79.01 1.75 -77.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178400310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.966 kcal (2) G-P(sol) polarization free energy of solvation -79.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds