Wall clock time and date at job start Tue Mar 31 2020 09:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.46877 * 2 1 4 4 C 1.53004 * 109.47117 * 180.02562 * 3 2 1 5 5 N 1.46906 * 109.47116 * 184.68282 * 4 3 2 6 6 C 1.46892 * 110.99947 * 300.12610 * 5 4 3 7 7 C 1.50702 * 109.46858 * 288.96932 * 6 5 4 8 8 H 1.07997 * 120.00412 * 4.65252 * 7 6 5 9 9 C 1.37885 * 119.99701 * 184.65090 * 7 6 5 10 10 N 1.31507 * 120.00217 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99810 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47384 * 89.99682 * 11 9 7 13 13 H 1.48493 * 109.47300 * 210.00040 * 11 9 7 14 14 H 1.48502 * 109.47222 * 330.00353 * 11 9 7 15 15 C 1.46904 * 111.00032 * 64.07873 * 5 4 3 16 16 C 1.50696 * 109.47192 * 76.33704 * 15 5 4 17 17 C 1.38250 * 119.95745 * 95.61640 * 16 15 5 18 18 C 1.38133 * 120.08196 * 180.02562 * 17 16 15 19 19 C 1.38771 * 119.99464 * 0.02562 * 18 17 16 20 20 O 1.35897 * 120.04384 * 179.97438 * 19 18 17 21 21 C 1.42900 * 117.00150 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47231 * 180.02562 * 21 20 19 23 23 C 1.38667 * 119.91455 * 0.25303 * 19 18 17 24 24 C 1.38390 * 119.92017 * 359.51765 * 23 19 18 25 25 F 1.35098 * 119.99868 * 180.21271 * 24 23 19 26 26 H 1.09003 * 109.46791 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46900 * 299.99792 * 1 2 3 28 28 H 1.08994 * 109.47689 * 59.99709 * 1 2 3 29 29 H 1.08998 * 109.47228 * 240.00350 * 2 1 3 30 30 H 1.08997 * 109.47817 * 119.99784 * 2 1 3 31 31 H 1.08999 * 109.47431 * 60.00709 * 3 2 1 32 32 H 1.09003 * 109.47503 * 300.00078 * 3 2 1 33 33 H 1.08992 * 109.47142 * 64.68138 * 4 3 2 34 34 H 1.09002 * 109.46976 * 304.67933 * 4 3 2 35 35 H 1.08996 * 109.47368 * 48.96830 * 6 5 4 36 36 H 1.09004 * 109.47229 * 168.97439 * 6 5 4 37 37 H 0.96999 * 120.00051 * 179.97438 * 10 9 7 38 38 H 1.09001 * 109.47167 * 316.33819 * 15 5 4 39 39 H 1.08999 * 109.47237 * 196.33916 * 15 5 4 40 40 H 1.07997 * 119.95847 * 359.97438 * 17 16 15 41 41 H 1.07997 * 120.00783 * 179.97438 * 18 17 16 42 42 H 1.09001 * 109.47091 * 300.00021 * 21 20 19 43 43 H 1.08995 * 109.47095 * 59.99655 * 21 20 19 44 44 H 1.08999 * 109.47321 * 60.00134 * 22 21 20 45 45 H 1.08998 * 109.46844 * 180.02562 * 22 21 20 46 46 H 1.09001 * 109.46882 * 299.99882 * 22 21 20 47 47 H 1.08004 * 120.04363 * 179.72817 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0596 2.8230 0.1124 6 6 3.5857 3.6433 -1.0102 7 6 4.2969 3.2270 -2.2719 8 1 4.9717 2.3839 -2.2583 9 6 4.0861 3.9225 -3.4436 10 7 3.2647 4.9494 -3.4600 11 14 4.9671 3.4061 -5.0077 12 1 4.1381 2.4143 -5.7385 13 1 5.1877 4.5965 -5.8677 14 1 6.2761 2.7970 -4.6604 15 6 3.6704 3.4160 1.3989 16 6 4.5543 2.8711 2.4911 17 6 5.6721 3.5789 2.8920 18 6 6.4844 3.0816 3.8926 19 6 6.1789 1.8699 4.4961 20 8 6.9777 1.3795 5.4801 21 6 6.6021 0.1271 6.0568 22 6 7.6124 -0.2596 7.1387 23 6 5.0609 1.1574 4.0898 24 6 4.2469 1.6611 3.0904 25 9 3.1549 0.9703 2.6962 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9329 1.0033 -0.9297 34 1 3.9336 0.8577 0.8442 35 1 2.5120 3.5027 -1.1351 36 1 3.7933 4.6937 -0.8058 37 1 3.1167 5.4390 -4.2843 38 1 2.6313 3.1669 1.6142 39 1 3.7813 4.4991 1.3481 40 1 5.9110 4.5213 2.4219 41 1 7.3575 3.6353 4.2046 42 1 5.6104 0.2143 6.5007 43 1 6.5873 -0.6396 5.2822 44 1 7.6268 0.5072 7.9133 45 1 7.3262 -1.2151 7.5782 46 1 8.6043 -0.3467 6.6952 47 1 4.8237 0.2120 4.5550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237631640.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:42 Heat of formation + Delta-G solvation = -67.943247 kcal Electronic energy + Delta-G solvation = -26208.767568 eV Core-core repulsion = 22499.044486 eV Total energy + Delta-G solvation = -3709.723082 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.79218 -40.12490 -38.13293 -36.83392 -33.88965 -32.68261 -32.03697 -30.75317 -30.13543 -28.23258 -26.78261 -24.70933 -24.16951 -23.13153 -22.04357 -21.39771 -21.07184 -19.23663 -18.57599 -16.80667 -16.39636 -16.26715 -16.03932 -15.73419 -15.28555 -14.82727 -14.55006 -14.38937 -14.28250 -13.84502 -13.66333 -13.46711 -13.41773 -12.99913 -12.74303 -12.40476 -12.28934 -12.09680 -11.91258 -11.79210 -11.41545 -11.31568 -11.09180 -10.93880 -10.86567 -10.78333 -10.64199 -10.59944 -10.46205 -10.35992 -9.83052 -9.62332 -9.18980 -8.82247 -8.39750 -8.03837 -7.12074 -5.98832 -3.98943 1.25951 1.38701 3.01053 3.34064 3.40296 3.45036 3.67453 4.35834 4.46677 4.63789 4.65112 4.82081 4.94994 5.00332 5.03201 5.18765 5.21664 5.34910 5.37297 5.39268 5.42616 5.48435 5.59854 5.66585 5.72780 5.81561 5.90271 6.07689 6.10885 6.15760 6.18234 6.22187 6.27411 6.31659 6.36757 6.52483 6.60256 6.66074 6.79916 6.83311 7.02486 7.30466 7.32018 7.44297 7.84948 8.13241 8.25972 8.58698 9.08164 9.64509 11.11814 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.013977 B = 0.003698 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.808980 B = 7569.480797 C = 8752.857779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.116 4.116 3 C -0.153 4.153 4 C 0.060 3.940 5 N -0.527 5.527 6 C 0.188 3.812 7 C -0.500 4.500 8 H 0.061 0.939 9 C 0.055 3.945 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.086 3.914 16 C -0.124 4.124 17 C -0.036 4.036 18 C -0.162 4.162 19 C 0.146 3.854 20 O -0.314 6.314 21 C 0.052 3.948 22 C -0.151 4.151 23 C -0.249 4.249 24 C 0.141 3.859 25 F -0.130 7.130 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.057 0.943 35 H -0.001 1.001 36 H 0.030 0.970 37 H 0.260 0.740 38 H 0.043 0.957 39 H 0.079 0.921 40 H 0.141 0.859 41 H 0.134 0.866 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.586 -8.629 18.757 20.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C -0.192 4.192 4 C -0.068 4.068 5 N -0.250 5.250 6 C 0.064 3.936 7 C -0.539 4.539 8 H 0.080 0.920 9 C -0.146 4.146 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.042 4.042 16 C -0.126 4.126 17 C -0.055 4.055 18 C -0.181 4.181 19 C 0.100 3.900 20 O -0.228 6.228 21 C -0.023 4.023 22 C -0.208 4.208 23 C -0.268 4.268 24 C 0.121 3.879 25 F -0.108 7.108 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.016 0.984 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.061 0.939 39 H 0.098 0.902 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.172 -8.435 18.669 20.731 hybrid contribution -0.859 -0.551 -1.012 1.437 sum 2.313 -8.986 17.658 19.947 Atomic orbital electron populations 1.21760 0.96668 1.00654 1.01574 1.21402 0.95114 0.97619 1.01289 1.22199 0.98765 0.96253 1.02010 1.22166 0.91799 0.91207 1.01624 1.62398 1.59254 1.02393 1.00945 1.19842 0.94185 0.92432 0.87161 1.21137 1.25605 1.14402 0.92716 0.92047 1.24957 0.95558 0.95075 0.98997 1.69949 1.36629 1.19956 1.27485 0.86542 0.80129 0.77924 0.83097 1.20836 1.21332 1.19808 1.21000 0.94974 0.99138 0.89086 1.20003 0.98933 0.94448 0.99208 1.20783 0.91556 0.99495 0.93642 1.20451 1.02696 0.95313 0.99630 1.18600 0.89395 0.93135 0.88856 1.86073 1.49894 1.37624 1.49189 1.22789 0.99135 0.84222 0.96139 1.21770 0.99461 1.01814 0.97798 1.21025 0.98702 1.03431 1.03682 1.17240 0.84784 0.90853 0.95062 1.91485 1.51413 1.78468 1.89454 0.93496 0.93253 0.92798 0.92330 0.92658 0.92739 0.90915 0.90676 0.92449 0.98381 0.95218 0.93025 0.93890 0.90223 0.84140 0.84852 0.92040 0.91921 0.91532 0.90433 0.91460 0.84832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.16 0.37 -1.69 16 2 C -0.12 -1.81 5.93 -26.73 -0.16 -1.97 16 3 C -0.15 -2.82 3.98 -26.73 -0.11 -2.93 16 4 C 0.06 1.20 4.65 -3.82 -0.02 1.19 16 5 N -0.53 -11.35 4.58 -237.52 -1.09 -12.44 16 6 C 0.19 4.82 4.55 -4.98 -0.02 4.80 16 7 C -0.50 -13.99 8.66 -34.44 -0.30 -14.28 16 8 H 0.06 1.73 7.28 -52.49 -0.38 1.34 16 9 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 10 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 11 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 15 C 0.09 1.57 4.89 -4.98 -0.02 1.54 16 16 C -0.12 -2.00 5.27 -104.53 -0.55 -2.55 16 17 C -0.04 -0.51 9.67 -39.62 -0.38 -0.90 16 18 C -0.16 -2.11 9.99 -39.42 -0.39 -2.50 16 19 C 0.15 1.91 6.69 -39.23 -0.26 1.64 16 20 O -0.31 -3.71 10.14 -19.42 -0.20 -3.90 16 21 C 0.05 0.45 5.46 37.16 0.20 0.65 16 22 C -0.15 -0.96 10.28 37.16 0.38 -0.58 16 23 C -0.25 -3.31 9.02 -39.37 -0.35 -3.67 16 24 C 0.14 2.16 6.31 -39.44 -0.25 1.91 16 25 F -0.13 -2.07 13.26 2.25 0.03 -2.04 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 0.82 8.09 -51.93 -0.42 0.40 16 31 H 0.05 0.99 5.64 -51.93 -0.29 0.69 16 32 H 0.07 1.54 6.43 -51.93 -0.33 1.20 16 33 H 0.07 1.63 7.12 -51.93 -0.37 1.26 16 34 H 0.06 1.08 4.97 -51.93 -0.26 0.82 16 35 H 0.00 -0.04 5.88 -51.93 -0.31 -0.35 16 36 H 0.03 0.81 7.70 -51.93 -0.40 0.41 16 37 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 38 H 0.04 0.78 5.42 -51.93 -0.28 0.50 16 39 H 0.08 1.42 7.55 -51.93 -0.39 1.03 16 40 H 0.14 1.82 8.06 -52.49 -0.42 1.40 16 41 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.06 0.47 7.67 -51.93 -0.40 0.07 16 43 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.13 1.49 6.30 -52.48 -0.33 1.16 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -30.24 371.95 -9.40 -39.64 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -7.50 Total: 0.12 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -1.97 Total: -17.87 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: -0.35 Total: -38.34 kcal Atomic # 8 Polarization: -3.71 SS G_CDS: -0.20 Total: -3.90 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.03 Total: -2.04 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.24 -9.40 -39.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237631640.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.301 kcal (2) G-P(sol) polarization free energy of solvation -30.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds