Wall clock time and date at job start Tue Mar 31 2020 09:25:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47250 * 2 1 4 4 O 1.42907 * 109.47030 * 179.97438 * 3 2 1 5 5 C 1.35902 * 116.99823 * 180.02562 * 4 3 2 6 6 C 1.38703 * 120.04451 * 0.02562 * 5 4 3 7 7 C 1.38344 * 119.92321 * 179.97438 * 6 5 4 8 8 F 1.35100 * 120.00036 * 180.02562 * 7 6 5 9 9 C 1.38519 * 120.00016 * 0.02572 * 7 6 5 10 10 C 1.38200 * 120.08664 * 359.95127 * 9 7 6 11 11 C 1.38177 * 120.08120 * 359.79313 * 10 9 7 12 12 C 1.50699 * 120.00370 * 180.23496 * 11 10 9 13 13 N 1.46903 * 109.47185 * 260.24991 * 12 11 10 14 14 C 1.46900 * 111.00230 * 189.99961 * 13 12 11 15 15 C 1.50700 * 109.46995 * 169.64761 * 14 13 12 16 16 H 1.08002 * 120.00277 * 354.96639 * 15 14 13 17 17 C 1.37881 * 119.99909 * 174.96898 * 15 14 13 18 18 N 1.31515 * 119.99831 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99827 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47486 * 59.99583 * 19 17 15 21 21 H 1.48502 * 109.46792 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47150 * 299.99384 * 19 17 15 23 23 C 1.46898 * 110.99936 * 66.04458 * 13 12 11 24 24 C 1.52999 * 109.47124 * 63.27646 * 23 13 12 25 25 C 1.53000 * 109.47269 * 180.55583 * 24 23 13 26 26 H 1.08996 * 109.47543 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.46881 * 300.00517 * 1 2 3 28 28 H 1.09008 * 109.46695 * 59.99681 * 1 2 3 29 29 H 1.09000 * 109.47423 * 239.99867 * 2 1 3 30 30 H 1.08998 * 109.46719 * 120.00265 * 2 1 3 31 31 H 1.08998 * 109.47476 * 299.99801 * 3 2 1 32 32 H 1.09009 * 109.47309 * 60.00362 * 3 2 1 33 33 H 1.08003 * 120.04235 * 359.95281 * 6 5 4 34 34 H 1.07996 * 119.95259 * 179.97438 * 9 7 6 35 35 H 1.08000 * 119.96046 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.47587 * 20.24782 * 12 11 10 37 37 H 1.09000 * 109.47429 * 140.25633 * 12 11 10 38 38 H 1.08991 * 109.47334 * 289.64594 * 14 13 12 39 39 H 1.08998 * 109.46677 * 49.65126 * 14 13 12 40 40 H 0.97000 * 119.99784 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.47370 * 183.27582 * 23 13 12 42 42 H 1.09003 * 109.47387 * 303.27872 * 23 13 12 43 43 H 1.08999 * 109.47224 * 300.56132 * 24 23 13 44 44 H 1.09001 * 109.47246 * 60.55780 * 24 23 13 45 45 H 1.08994 * 109.47004 * 60.00591 * 25 24 23 46 46 H 1.09003 * 109.47278 * 179.97438 * 25 24 23 47 47 H 1.08994 * 109.47173 * 300.00039 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 0.0006 5 6 4.0861 2.6533 0.0012 6 6 3.3316 3.8172 0.0018 7 6 3.9623 5.0485 0.0030 8 9 3.2289 6.1831 0.0040 9 6 5.3457 5.1180 0.0030 10 6 6.0977 3.9585 0.0029 11 6 5.4714 2.7269 0.0071 12 6 6.2931 1.4636 0.0124 13 7 6.3644 0.9202 -1.3506 14 6 6.9511 -0.4266 -1.3504 15 6 6.7775 -1.0504 -2.7112 16 1 6.2105 -0.5357 -3.4728 17 6 7.3423 -2.2782 -2.9838 18 7 8.0331 -2.9048 -2.0565 19 14 7.1276 -3.0511 -4.6709 20 1 7.7045 -2.1535 -5.7036 21 1 7.8255 -4.3614 -4.7074 22 1 5.6817 -3.2532 -4.9424 23 6 7.1130 1.8204 -2.2378 24 6 8.5591 1.9305 -1.7503 25 6 9.3353 2.8789 -2.6662 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9564 0.8901 33 1 2.2529 3.7623 0.0010 34 1 5.8373 6.0797 0.0035 35 1 7.1762 4.0152 0.0034 36 1 7.2992 1.6860 0.3679 37 1 5.8284 0.7306 0.6718 38 1 8.0130 -0.3602 -1.1140 39 1 6.4500 -1.0410 -0.6024 40 1 8.4301 -3.7688 -2.2482 41 1 7.1010 1.4231 -3.2527 42 1 6.6504 2.8073 -2.2284 43 1 8.5706 2.3185 -0.7317 44 1 9.0249 0.9452 -1.7690 45 1 8.8696 3.8642 -2.6474 46 1 10.3654 2.9577 -2.3186 47 1 9.3238 2.4909 -3.6846 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237904094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:25:10 Heat of formation + Delta-G solvation = -71.068560 kcal Electronic energy + Delta-G solvation = -26395.095790 eV Core-core repulsion = 22685.237184 eV Total energy + Delta-G solvation = -3709.858606 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.185 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.88224 -40.17657 -37.87227 -36.75828 -33.89005 -32.76157 -32.35593 -30.76830 -29.97918 -27.09977 -26.52298 -25.95229 -23.79311 -22.80240 -22.05199 -21.74739 -20.97007 -19.17806 -18.31807 -16.86140 -16.27390 -16.22210 -15.80192 -15.51960 -15.34063 -15.06579 -14.61308 -14.43665 -14.25629 -14.02559 -13.66960 -13.47160 -13.33065 -13.08709 -12.52762 -12.23584 -12.15840 -12.08921 -11.65658 -11.49035 -11.39654 -11.22626 -11.11228 -11.01021 -10.90862 -10.83877 -10.73766 -10.61041 -10.53385 -10.38662 -9.88567 -9.64767 -9.17619 -8.76952 -8.37745 -8.00152 -7.04789 -5.97539 -3.97666 1.21444 1.40965 3.26398 3.35669 3.39682 3.42807 3.66978 4.27274 4.47154 4.72806 4.86721 4.88415 4.97526 5.03373 5.15427 5.16798 5.30082 5.34519 5.37970 5.43677 5.54645 5.58116 5.59396 5.65282 5.87318 5.89496 5.91090 6.03033 6.06461 6.10182 6.15263 6.22226 6.26862 6.31875 6.39965 6.46808 6.55150 6.60151 6.80925 6.84499 7.01125 7.39634 7.48533 7.54572 7.87187 8.17540 8.28661 8.63077 9.10172 9.65863 11.12998 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.010409 B = 0.004861 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2689.249552 B = 5758.785679 C = 7820.498665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.058 3.942 4 O -0.285 6.285 5 C 0.183 3.817 6 C -0.253 4.253 7 C 0.126 3.874 8 F -0.144 7.144 9 C -0.195 4.195 10 C -0.051 4.051 11 C -0.103 4.103 12 C 0.097 3.903 13 N -0.524 5.524 14 C 0.191 3.809 15 C -0.500 4.500 16 H 0.061 0.939 17 C 0.056 3.944 18 N -0.900 5.900 19 Si 0.894 3.106 20 H -0.278 1.278 21 H -0.289 1.289 22 H -0.277 1.277 23 C 0.066 3.934 24 C -0.164 4.164 25 C -0.142 4.142 26 H 0.063 0.937 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.135 0.865 34 H 0.131 0.869 35 H 0.135 0.865 36 H 0.036 0.964 37 H 0.078 0.922 38 H 0.002 0.998 39 H 0.024 0.976 40 H 0.260 0.740 41 H 0.078 0.922 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.077 0.923 45 H 0.045 0.955 46 H 0.044 0.956 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.586 13.010 5.755 16.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.018 4.018 4 O -0.196 6.196 5 C 0.136 3.864 6 C -0.273 4.273 7 C 0.107 3.893 8 F -0.122 7.122 9 C -0.214 4.214 10 C -0.070 4.070 11 C -0.105 4.105 12 C -0.031 4.031 13 N -0.246 5.246 14 C 0.066 3.934 15 C -0.539 4.539 16 H 0.079 0.921 17 C -0.145 4.145 18 N -0.540 5.540 19 Si 0.722 3.278 20 H -0.204 1.204 21 H -0.215 1.215 22 H -0.203 1.203 23 C -0.063 4.063 24 C -0.203 4.203 25 C -0.200 4.200 26 H 0.082 0.918 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.153 0.847 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.020 0.980 39 H 0.043 0.957 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.095 0.905 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.938 12.598 5.607 16.433 hybrid contribution 0.417 -0.016 -0.625 0.752 sum -8.520 12.582 4.982 15.992 Atomic orbital electron populations 1.21682 0.94641 1.02392 1.01774 1.21472 0.95480 0.94783 1.04516 1.22886 0.78975 0.99061 1.00857 1.86293 1.20590 1.25555 1.87207 1.18471 0.91449 0.83675 0.92828 1.21086 1.00806 0.91315 1.14083 1.17319 0.89184 0.81258 1.01552 1.91469 1.77538 1.49307 1.93930 1.20914 0.91668 0.99894 1.08965 1.20763 0.99980 0.90235 0.95975 1.19453 0.90784 0.96169 1.04073 1.20859 0.96167 0.92498 0.93573 1.62349 1.52842 1.04060 1.05377 1.19766 0.93054 0.82811 0.97746 1.21094 1.31971 1.02987 0.97807 0.92119 1.24947 0.95416 0.97172 0.96957 1.69946 1.35308 1.15489 1.33241 0.86627 0.78258 0.78339 0.84565 1.20370 1.21463 1.20283 1.22046 0.89866 0.95727 0.98618 1.22183 0.98895 1.00710 0.98478 1.21653 0.99196 0.98946 1.00253 0.91779 0.92734 0.92528 0.90011 0.90756 0.92157 0.92526 0.84685 0.85078 0.84708 0.94560 0.90319 0.98000 0.95745 0.93016 0.90346 0.93059 0.93167 0.90476 0.93571 0.93671 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.91 37.16 0.37 -0.93 16 2 C -0.12 -1.44 6.30 -26.73 -0.17 -1.61 16 3 C 0.06 0.70 4.74 37.16 0.18 0.88 16 4 O -0.28 -4.60 9.37 -19.43 -0.18 -4.78 16 5 C 0.18 2.85 6.66 -39.23 -0.26 2.59 16 6 C -0.25 -3.48 9.01 -39.37 -0.35 -3.83 16 7 C 0.13 1.71 7.30 -39.44 -0.29 1.42 16 8 F -0.14 -1.92 17.27 2.25 0.04 -1.88 16 9 C -0.20 -2.47 10.02 -39.49 -0.40 -2.86 16 10 C -0.05 -0.69 8.61 -39.62 -0.34 -1.03 16 11 C -0.10 -1.64 4.60 -104.46 -0.48 -2.12 16 12 C 0.10 1.75 4.57 -4.98 -0.02 1.73 16 13 N -0.52 -11.09 4.69 -237.52 -1.11 -12.20 16 14 C 0.19 4.86 4.50 -4.98 -0.02 4.83 16 15 C -0.50 -13.84 8.41 -34.44 -0.29 -14.13 16 16 H 0.06 1.69 7.32 -52.49 -0.38 1.30 16 17 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 19 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 C 0.07 1.27 4.91 -3.83 -0.02 1.25 16 24 C -0.16 -2.86 5.28 -26.73 -0.14 -3.00 16 25 C -0.14 -2.09 9.91 37.16 0.37 -1.72 16 26 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 29 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.69 7.66 -51.93 -0.40 0.30 16 32 H 0.06 0.59 7.66 -51.92 -0.40 0.19 16 33 H 0.14 1.59 6.30 -52.48 -0.33 1.26 16 34 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.14 1.61 7.72 -52.49 -0.41 1.21 16 36 H 0.04 0.63 5.96 -51.93 -0.31 0.32 16 37 H 0.08 1.49 7.64 -51.93 -0.40 1.10 16 38 H 0.00 0.06 6.01 -51.93 -0.31 -0.25 16 39 H 0.02 0.67 7.92 -51.93 -0.41 0.26 16 40 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.08 1.67 6.97 -51.93 -0.36 1.31 16 42 H 0.05 0.90 6.45 -51.93 -0.33 0.57 16 43 H 0.05 0.81 6.01 -51.93 -0.31 0.50 16 44 H 0.08 1.61 6.31 -51.93 -0.33 1.28 16 45 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 377.09 15.07 5.68 5.68 Total: -1.00 -29.65 377.09 -9.45 -39.10 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -7.62 Total: 0.24 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -1.97 Total: -17.05 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.38 Total: -37.91 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.18 Total: -4.78 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.65 -9.45 -39.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237904094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.973 kcal (2) G-P(sol) polarization free energy of solvation -29.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds