Wall clock time and date at job start Tue Mar 31 2020 09:18:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.46944 * 2 1 4 4 C 1.52999 * 109.46695 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.46766 * 179.70989 * 4 3 2 6 6 C 1.46904 * 110.99894 * 288.19495 * 5 4 3 7 7 C 1.50705 * 109.46968 * 160.35738 * 6 5 4 8 8 H 1.07998 * 119.99791 * 4.63865 * 7 6 5 9 9 C 1.37876 * 119.99897 * 184.64670 * 7 6 5 10 10 N 1.31510 * 119.99997 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 119.99780 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47058 * 90.00020 * 11 9 7 13 13 H 1.48503 * 109.47279 * 209.99851 * 11 9 7 14 14 H 1.48500 * 109.47601 * 329.99815 * 11 9 7 15 15 C 1.46900 * 111.00104 * 164.24189 * 5 4 3 16 16 C 1.50705 * 109.46888 * 293.95571 * 15 5 4 17 17 C 1.38265 * 119.93624 * 270.29464 * 16 15 5 18 18 C 1.38179 * 120.09579 * 180.25284 * 17 16 15 19 19 C 1.38660 * 119.96617 * 359.47419 * 18 17 16 20 20 O 1.35960 * 120.05825 * 180.27620 * 19 18 17 21 21 C 1.42899 * 117.00377 * 359.97438 * 20 19 18 22 22 C 1.53000 * 109.47408 * 180.02562 * 21 20 19 23 23 C 1.38902 * 119.87905 * 0.25144 * 19 18 17 24 24 F 1.35096 * 120.05218 * 180.02562 * 23 19 18 25 25 C 1.38250 * 119.93950 * 89.99548 * 16 15 5 26 26 H 1.08998 * 109.47542 * 300.00096 * 1 2 3 27 27 H 1.08998 * 109.47198 * 59.99932 * 1 2 3 28 28 H 1.09001 * 109.47133 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47316 * 240.00405 * 2 1 3 30 30 H 1.08998 * 109.47198 * 120.00068 * 2 1 3 31 31 H 1.08999 * 109.46783 * 60.00079 * 3 2 1 32 32 H 1.08998 * 109.47229 * 300.00049 * 3 2 1 33 33 H 1.09002 * 109.46996 * 59.71331 * 4 3 2 34 34 H 1.09000 * 109.47375 * 299.71317 * 4 3 2 35 35 H 1.09005 * 109.47026 * 280.35044 * 6 5 4 36 36 H 1.08991 * 109.47205 * 40.35213 * 6 5 4 37 37 H 0.97002 * 120.00176 * 179.97438 * 10 9 7 38 38 H 1.08996 * 109.47649 * 173.95613 * 15 5 4 39 39 H 1.09005 * 109.47370 * 53.94833 * 15 5 4 40 40 H 1.08004 * 119.95214 * 0.02562 * 17 16 15 41 41 H 1.07997 * 120.01338 * 179.74745 * 18 17 16 42 42 H 1.09005 * 109.46535 * 300.00420 * 21 20 19 43 43 H 1.09000 * 109.47009 * 60.00107 * 21 20 19 44 44 H 1.09002 * 109.47069 * 59.99367 * 22 21 20 45 45 H 1.08997 * 109.47141 * 179.97438 * 22 21 20 46 46 H 1.08998 * 109.46552 * 300.00004 * 22 21 20 47 47 H 1.08000 * 119.98733 * 0.03136 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0596 2.8275 -0.0064 6 6 3.8318 3.4598 -1.3127 7 6 3.8835 4.9583 -1.1613 8 1 4.1410 5.3962 -0.2082 9 6 3.6019 5.7702 -2.2394 10 7 3.2886 5.2370 -3.4001 11 14 3.6652 7.6276 -2.0515 12 1 5.0348 8.1102 -2.3624 13 1 2.6959 8.2532 -2.9867 14 1 3.3153 7.9964 -0.6563 15 6 5.4793 2.8859 0.3664 16 6 5.6398 2.4561 1.8019 17 6 5.5671 3.3939 2.8152 18 6 5.7190 3.0043 4.1322 19 6 5.9338 1.6692 4.4391 20 8 6.0779 1.2830 5.7347 21 6 5.9975 2.3057 6.7294 22 6 6.1824 1.6848 8.1155 23 6 6.0009 0.7272 3.4205 24 9 6.2095 -0.5745 3.7156 25 6 5.8532 1.1239 2.1035 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9564 -0.8900 33 1 3.9336 0.9241 -0.8865 34 1 3.9329 0.9333 0.8934 35 1 4.6042 3.1384 -2.0115 36 1 2.8533 3.1665 -1.6926 37 1 3.0901 5.8082 -4.1585 38 1 5.8440 3.9064 0.2498 39 1 6.0520 2.2194 -0.2786 40 1 5.3951 4.4332 2.5768 41 1 5.6661 3.7386 4.9223 42 1 6.7800 3.0443 6.5552 43 1 5.0224 2.7897 6.6749 44 1 7.1576 1.2009 8.1697 45 1 6.1215 2.4649 8.8742 46 1 5.4002 0.9460 8.2898 47 1 5.9053 0.3925 1.3105 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001237958056.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:46 Heat of formation + Delta-G solvation = -74.901251 kcal Electronic energy + Delta-G solvation = -25743.394698 eV Core-core repulsion = 22033.369895 eV Total energy + Delta-G solvation = -3710.024804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.185 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.65291 -40.06873 -38.28179 -36.57671 -34.24305 -32.65049 -32.05525 -30.68691 -30.15588 -28.61188 -26.72713 -24.89826 -24.00476 -22.92750 -22.06746 -21.49352 -20.62526 -19.72077 -18.38681 -16.68074 -16.66362 -16.45927 -16.36656 -15.30963 -15.13031 -14.81821 -14.68103 -14.55210 -14.09386 -13.95199 -13.83738 -13.34035 -13.22117 -13.01695 -12.68229 -12.59860 -12.31332 -12.06949 -12.00618 -11.84815 -11.62670 -11.27713 -11.11326 -10.95747 -10.93333 -10.84295 -10.73677 -10.67870 -10.47558 -10.28719 -10.08557 -9.63923 -9.23953 -8.78370 -8.42999 -7.99750 -7.26186 -6.02885 -4.04036 1.25105 1.36691 2.98896 3.30485 3.37304 3.40759 3.66946 4.29657 4.41958 4.65534 4.67548 4.81252 4.93145 4.97996 5.03505 5.17792 5.29837 5.30601 5.33015 5.40563 5.46676 5.51338 5.52084 5.61535 5.75606 5.77948 5.87291 5.98798 6.07757 6.09693 6.15685 6.22947 6.24889 6.29912 6.34072 6.40398 6.45349 6.74034 6.75466 6.80350 6.89279 7.23118 7.31065 7.33439 7.81028 8.11177 8.18833 8.53101 9.03112 9.59962 11.07649 Molecular weight = 309.18amu Principal moments of inertia in cm(-1) A = 0.011033 B = 0.003845 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.211624 B = 7279.779347 C = 8867.076024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.112 4.112 4 C 0.050 3.950 5 N -0.529 5.529 6 C 0.191 3.809 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.055 3.945 10 N -0.899 5.899 11 Si 0.895 3.105 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.273 1.273 15 C 0.100 3.900 16 C -0.067 4.067 17 C -0.066 4.066 18 C -0.183 4.183 19 C 0.086 3.914 20 O -0.313 6.313 21 C 0.054 3.946 22 C -0.151 4.151 23 C 0.063 3.937 24 F -0.139 7.139 25 C -0.114 4.114 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.021 0.979 34 H 0.062 0.938 35 H -0.011 1.011 36 H 0.039 0.961 37 H 0.261 0.739 38 H 0.094 0.906 39 H 0.031 0.969 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.066 0.934 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.616 -7.776 16.374 18.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.150 4.150 4 C -0.079 4.079 5 N -0.253 5.253 6 C 0.066 3.934 7 C -0.542 4.542 8 H 0.081 0.919 9 C -0.146 4.146 10 N -0.539 5.539 11 Si 0.724 3.276 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.198 1.198 15 C -0.028 4.028 16 C -0.068 4.068 17 C -0.084 4.084 18 C -0.202 4.202 19 C 0.040 3.960 20 O -0.228 6.228 21 C -0.021 4.021 22 C -0.208 4.208 23 C 0.043 3.957 24 F -0.117 7.117 25 C -0.133 4.133 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.039 0.961 34 H 0.081 0.919 35 H 0.007 0.993 36 H 0.057 0.943 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.049 0.951 40 H 0.154 0.846 41 H 0.151 0.849 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.334 -7.692 16.620 18.614 hybrid contribution 0.404 0.584 -0.588 0.922 sum 3.738 -7.108 16.031 17.930 Atomic orbital electron populations 1.21746 0.96218 1.00818 1.01913 1.21499 0.95592 0.97700 1.01264 1.21563 0.95146 0.95246 1.03063 1.22163 0.95572 0.90898 0.99249 1.62162 1.14241 1.14600 1.34340 1.19812 0.96587 0.94265 0.82708 1.21153 1.46113 0.90647 0.96323 0.91940 1.24977 0.95516 0.98849 0.95261 1.69951 1.47589 1.35243 1.01087 0.86539 0.77698 0.85441 0.77970 1.20796 1.21332 1.19809 1.20961 0.90913 1.01994 0.88941 1.19861 0.98160 0.91658 0.97131 1.20992 0.95991 1.00605 0.90842 1.21116 1.07120 0.93643 0.98298 1.18877 1.00805 0.92820 0.83468 1.86094 1.87702 1.36566 1.12414 1.22796 1.01490 0.90381 0.87471 1.21767 1.03376 1.01995 0.93704 1.16893 1.09351 0.77581 0.91832 1.91463 1.92930 1.33265 1.94066 1.20953 1.01507 0.97212 0.93653 0.92898 0.92671 0.93386 0.92498 0.92632 0.91724 0.91261 0.96059 0.91948 0.99340 0.94336 0.92959 0.88785 0.95060 0.84568 0.84870 0.91947 0.91850 0.91571 0.90361 0.91516 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 37.16 0.37 -1.53 16 2 C -0.12 -1.72 5.93 -26.73 -0.16 -1.88 16 3 C -0.11 -1.93 5.28 -26.73 -0.14 -2.07 16 4 C 0.05 0.89 4.80 -3.82 -0.02 0.87 16 5 N -0.53 -10.88 4.37 -237.51 -1.04 -11.92 16 6 C 0.19 4.77 4.59 -4.97 -0.02 4.75 16 7 C -0.50 -13.61 8.61 -34.44 -0.30 -13.90 16 8 H 0.06 1.66 7.66 -52.49 -0.40 1.26 16 9 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 10 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 11 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 15 C 0.10 1.81 4.94 -4.97 -0.02 1.79 16 16 C -0.07 -1.05 4.94 -104.61 -0.52 -1.57 16 17 C -0.07 -0.95 9.69 -39.59 -0.38 -1.33 16 18 C -0.18 -2.36 9.04 -39.45 -0.36 -2.72 16 19 C 0.09 1.22 6.69 -39.18 -0.26 0.96 16 20 O -0.31 -4.15 10.00 -19.61 -0.20 -4.35 16 21 C 0.05 0.49 5.46 37.16 0.20 0.69 16 22 C -0.15 -1.07 10.28 37.16 0.38 -0.69 16 23 C 0.06 0.96 7.31 -39.30 -0.29 0.67 16 24 F -0.14 -2.17 17.11 2.25 0.04 -2.14 16 25 C -0.11 -1.69 7.82 -39.54 -0.31 -2.00 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.34 6.52 -51.93 -0.34 1.00 16 33 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 34 H 0.06 1.03 5.14 -51.93 -0.27 0.76 16 35 H -0.01 -0.30 8.00 -51.93 -0.42 -0.72 16 36 H 0.04 1.04 6.23 -51.93 -0.32 0.71 16 37 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 38 H 0.09 1.81 7.27 -51.93 -0.38 1.43 16 39 H 0.03 0.55 8.06 -51.93 -0.42 0.14 16 40 H 0.14 1.91 8.06 -52.48 -0.42 1.48 16 41 H 0.13 1.36 6.30 -52.49 -0.33 1.03 16 42 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 43 H 0.06 0.53 7.66 -51.93 -0.40 0.13 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.14 1.88 7.73 -52.49 -0.41 1.48 16 LS Contribution 382.32 15.07 5.76 5.76 Total: -1.00 -29.73 382.32 -9.50 -39.23 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -7.86 Total: -0.73 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -1.92 Total: -16.53 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.30 Total: -37.37 kcal Atomic # 8 Polarization: -4.15 SS G_CDS: -0.20 Total: -4.35 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.14 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -29.73 -9.50 -39.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237958056.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.674 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds