Wall clock time and date at job start Tue Mar 31 2020 09:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.34811 * 126.59309 * 124.70838 * 4 3 2 6 6 C 1.36596 * 106.83855 * 179.90962 * 5 4 3 7 7 C 1.47523 * 125.77300 * 180.13838 * 6 5 4 8 8 O 1.21600 * 119.99794 * 0.23853 * 7 6 5 9 9 N 1.34774 * 120.00496 * 180.23878 * 7 6 5 10 10 C 1.46494 * 120.00657 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47408 * 180.02562 * 10 9 7 12 12 H 1.08993 * 109.47687 * 64.99935 * 11 10 9 13 13 N 1.46500 * 109.46704 * 304.99552 * 11 10 9 14 14 C 1.36947 * 119.99546 * 155.00404 * 13 11 10 15 15 H 1.07998 * 120.00140 * 359.97438 * 14 13 11 16 16 C 1.38803 * 119.99731 * 180.02562 * 14 13 11 17 17 N 1.31619 * 120.00346 * 359.97438 * 16 14 13 18 18 Si 1.86808 * 119.99955 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46907 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.46875 * 119.99772 * 18 16 14 21 21 H 1.48496 * 109.46886 * 239.99829 * 18 16 14 22 22 C 1.53007 * 109.46993 * 184.99880 * 11 10 9 23 23 C 1.52995 * 109.47364 * 299.99962 * 22 11 10 24 24 C 1.53001 * 109.46867 * 59.99744 * 22 11 10 25 25 N 1.34405 * 108.45811 * 0.36763 * 6 5 4 26 26 N 1.28757 * 109.52132 * 359.77227 * 25 6 5 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 30 30 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 31 31 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 32 32 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 33 33 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 34 34 H 1.08004 * 126.58450 * 0.04031 * 5 4 3 35 35 H 0.97007 * 119.99571 * 0.02562 * 9 7 6 36 36 H 1.09008 * 109.47142 * 299.99978 * 10 9 7 37 37 H 1.09002 * 109.46852 * 59.99475 * 10 9 7 38 38 H 0.96995 * 120.00569 * 335.00226 * 13 11 10 39 39 H 0.97001 * 120.00394 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.46622 * 179.97438 * 22 11 10 41 41 H 1.09002 * 109.47008 * 59.99495 * 23 22 11 42 42 H 1.08999 * 109.47287 * 180.02562 * 23 22 11 43 43 H 1.09006 * 109.47041 * 299.99843 * 23 22 11 44 44 H 1.09000 * 109.46922 * 60.00142 * 24 22 11 45 45 H 1.09008 * 109.46898 * 179.97438 * 24 22 11 46 46 H 1.08997 * 109.47469 * 299.99976 * 24 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3082 2.0591 -0.8906 6 6 5.5940 1.7979 -0.5105 7 6 6.8098 2.2766 -1.1953 8 8 6.7145 2.9717 -2.1884 9 7 8.0263 1.9434 -0.7203 10 6 9.2336 2.4191 -1.3999 11 6 10.4709 1.9019 -0.6634 12 1 10.5088 0.8151 -0.7354 13 7 10.4003 2.2958 0.7459 14 6 11.0660 1.5665 1.6948 15 1 11.6426 0.7008 1.4043 16 6 10.9987 1.9394 3.0301 17 7 10.2956 2.9941 3.3843 18 14 11.9062 0.9441 4.3246 19 1 12.6171 -0.1848 3.6726 20 1 12.8894 1.8142 5.0186 21 1 10.9329 0.4116 5.3117 22 6 11.7287 2.4993 -1.2975 23 6 11.8024 2.0880 -2.7693 24 6 11.6755 4.0250 -1.1964 25 7 5.5641 1.0269 0.5900 26 7 4.3413 0.7963 0.9207 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6767 1.9564 0.8899 34 1 3.9952 2.6483 -1.7399 35 1 8.1023 1.3885 0.0718 36 1 9.2419 2.0512 -2.4260 37 1 9.2423 3.5091 -1.4047 38 1 9.8822 3.0731 1.0069 39 1 10.2489 3.2549 4.3175 40 1 12.6102 2.1311 -0.7724 41 1 10.9209 2.4564 -3.2941 42 1 12.6987 2.5132 -3.2210 43 1 11.8403 1.0010 -2.8414 44 1 11.6230 4.3180 -0.1478 45 1 12.5719 4.4505 -1.6477 46 1 10.7941 4.3934 -1.7211 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698977832.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:33 Heat of formation + Delta-G solvation = 53.567513 kcal Electronic energy + Delta-G solvation = -25606.013044 eV Core-core repulsion = 21953.771777 eV Total energy + Delta-G solvation = -3652.241267 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.191 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.14052 -39.11257 -37.21837 -36.21162 -33.72650 -33.15717 -32.75754 -30.90397 -30.23847 -27.77564 -26.91976 -26.55871 -24.18042 -23.22951 -22.78576 -22.13706 -21.65875 -20.01185 -18.77845 -17.77904 -17.20592 -16.33665 -16.06878 -15.96374 -15.41345 -14.90879 -14.73271 -14.49243 -14.12724 -13.89673 -13.54945 -13.45038 -13.13832 -13.06482 -12.85778 -12.55524 -12.47280 -12.19150 -11.97680 -11.87933 -11.39957 -11.39667 -11.11161 -11.04743 -10.92123 -10.80447 -10.56986 -10.36664 -10.29901 -10.09368 -9.85236 -9.65173 -9.59902 -9.24356 -8.86232 -8.50311 -6.93912 -5.73081 -3.02622 1.16002 1.89798 1.97060 3.46559 3.52365 3.53782 3.54734 3.61194 4.04780 4.27138 4.33253 4.60241 4.62295 4.79420 4.80708 4.92774 5.06191 5.13046 5.31704 5.41020 5.45478 5.50778 5.57586 5.59368 5.70358 5.73494 5.80390 5.86329 5.92307 6.05453 6.14521 6.24018 6.31817 6.38690 6.43725 6.51782 6.68557 6.80705 6.93310 7.08815 7.12006 7.74836 7.87397 8.14893 8.43917 8.57457 9.56366 10.10871 10.46406 11.48820 Molecular weight = 309.19amu Principal moments of inertia in cm(-1) A = 0.012334 B = 0.003510 C = 0.002867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.637473 B = 7975.569911 C = 9765.303942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.139 4.139 3 C 0.122 3.878 4 N -0.366 5.366 5 C 0.086 3.914 6 C -0.095 4.095 7 C 0.599 3.401 8 O -0.556 6.556 9 N -0.694 5.694 10 C 0.110 3.890 11 C 0.169 3.831 12 H 0.054 0.946 13 N -0.719 5.719 14 C -0.240 4.240 15 H 0.071 0.929 16 C -0.009 4.009 17 N -0.928 5.928 18 Si 0.904 3.096 19 H -0.281 1.281 20 H -0.293 1.293 21 H -0.292 1.292 22 C -0.111 4.111 23 C -0.149 4.149 24 C -0.141 4.141 25 N -0.193 5.193 26 N -0.065 5.065 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.202 0.798 35 H 0.419 0.581 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.386 0.614 39 H 0.254 0.746 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.045 0.955 43 H 0.049 0.951 44 H 0.068 0.932 45 H 0.038 0.962 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.558 -2.664 -11.482 20.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.177 4.177 3 C 0.001 3.999 4 N -0.151 5.151 5 C -0.071 4.071 6 C -0.234 4.234 7 C 0.383 3.617 8 O -0.435 6.435 9 N -0.344 5.344 10 C -0.014 4.014 11 C 0.059 3.941 12 H 0.072 0.928 13 N -0.360 5.360 14 C -0.371 4.371 15 H 0.089 0.911 16 C -0.205 4.205 17 N -0.576 5.576 18 Si 0.735 3.265 19 H -0.206 1.206 20 H -0.221 1.221 21 H -0.219 1.219 22 C -0.133 4.133 23 C -0.207 4.207 24 C -0.198 4.198 25 N -0.066 5.066 26 N -0.046 5.046 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.219 0.781 35 H 0.256 0.744 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.220 0.780 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.087 0.913 45 H 0.057 0.943 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -16.489 -3.177 -10.797 19.964 hybrid contribution 0.223 0.207 0.443 0.537 sum -16.266 -2.970 -10.354 19.510 Atomic orbital electron populations 1.21702 0.93965 1.02791 1.02282 1.21835 0.96826 0.94720 1.04303 1.22106 0.72865 0.99938 1.05006 1.50575 1.08669 1.35717 1.20131 1.23320 0.90252 0.97465 0.96015 1.21579 0.94659 1.08202 0.98971 1.16756 0.82014 0.79877 0.83097 1.90757 1.86945 1.39533 1.26270 1.45835 1.04557 1.52304 1.31736 1.21881 0.83900 0.99876 0.95699 1.20513 0.90463 0.97293 0.85860 0.92832 1.42439 1.59796 1.34051 0.99718 1.19231 1.23485 1.07174 0.87171 0.91121 1.24713 1.00557 0.98125 0.97138 1.69670 1.44618 1.26908 1.16384 0.86171 0.78965 0.79207 0.82135 1.20609 1.22062 1.21920 1.21724 1.00750 0.96368 0.94416 1.21927 1.00944 1.00666 0.97120 1.21773 0.99736 0.95557 1.02738 1.74766 1.12496 1.09697 1.09661 1.82007 0.93460 1.17285 1.11801 0.91699 0.92084 0.92295 0.89930 0.91061 0.87878 0.88412 0.78094 0.74369 0.91455 0.91154 0.78009 0.93613 0.90915 0.92910 0.93568 0.93231 0.91317 0.94308 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.14 -0.86 6.14 -26.73 -0.16 -1.02 16 3 C 0.12 0.78 6.54 -4.04 -0.03 0.75 16 4 N -0.37 -4.13 3.69 -61.06 -0.23 -4.35 16 5 C 0.09 1.04 11.27 -16.84 -0.19 0.85 16 6 C -0.09 -1.53 6.99 -83.55 -0.58 -2.11 16 7 C 0.60 10.74 7.82 -12.48 -0.10 10.64 16 8 O -0.56 -10.64 16.86 5.28 0.09 -10.55 16 9 N -0.69 -12.79 5.38 -61.35 -0.33 -13.12 16 10 C 0.11 1.95 4.51 -4.05 -0.02 1.93 16 11 C 0.17 3.23 2.27 -67.93 -0.15 3.08 16 12 H 0.05 1.05 8.08 -51.93 -0.42 0.63 16 13 N -0.72 -17.03 3.80 -53.43 -0.20 -17.23 16 14 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 15 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 16 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 17 N -0.93 -27.68 13.06 55.49 0.72 -26.96 16 18 Si 0.90 22.37 29.55 -169.99 -5.02 17.35 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 21 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 22 C -0.11 -1.91 2.91 -90.62 -0.26 -2.18 16 23 C -0.15 -2.10 8.84 37.15 0.33 -1.77 16 24 C -0.14 -2.42 8.69 37.16 0.32 -2.10 16 25 N -0.19 -3.41 12.04 32.85 0.40 -3.01 16 26 N -0.07 -1.01 13.65 60.35 0.82 -0.19 16 27 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.10 0.36 8.08 -51.93 -0.42 -0.06 16 33 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.20 1.70 8.06 -52.48 -0.42 1.27 16 35 H 0.42 8.31 7.82 -40.82 -0.32 7.99 16 36 H 0.07 1.09 6.71 -51.92 -0.35 0.75 16 37 H 0.07 1.30 6.18 -51.93 -0.32 0.97 16 38 H 0.39 9.99 7.80 -40.82 -0.32 9.67 16 39 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 41 H 0.05 0.71 6.54 -51.93 -0.34 0.37 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 1.39 7.60 -51.93 -0.39 0.99 16 45 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.05 0.75 6.32 -51.93 -0.33 0.42 16 LS Contribution 381.43 15.07 5.75 5.75 Total: -1.00 -32.59 381.43 -6.13 -38.72 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -7.41 Total: 12.66 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -0.72 Total: 0.93 kcal Atomic # 7 Polarization: -66.05 SS G_CDS: 1.18 Total: -64.86 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.59 -6.13 -38.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698977832.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.288 kcal (2) G-P(sol) polarization free energy of solvation -32.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds