Wall clock time and date at job start Tue Mar 31 2020 09:46:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.39886 * 125.74622 * 2 1 4 4 C 1.30288 * 109.23349 * 179.76959 * 3 2 1 5 5 C 1.41484 * 108.18997 * 0.38729 * 4 3 2 6 6 C 1.46771 * 126.52053 * 179.87518 * 5 4 3 7 7 O 1.21693 * 119.99955 * 179.68719 * 6 5 4 8 8 N 1.34777 * 119.99972 * 359.41535 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27630 * 8 6 5 10 10 H 1.09002 * 109.46947 * 34.99370 * 9 8 6 11 11 C 1.52994 * 109.46860 * 154.99819 * 9 8 6 12 12 N 1.46495 * 109.47334 * 304.99379 * 11 9 8 13 13 C 1.36935 * 120.00350 * 180.02562 * 12 11 9 14 14 H 1.08004 * 120.00012 * 359.97438 * 13 12 11 15 15 C 1.38815 * 120.00446 * 180.02562 * 13 12 11 16 16 N 1.31625 * 119.99583 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00341 * 180.02562 * 15 13 12 18 18 H 1.48488 * 109.47383 * 89.99702 * 17 15 13 19 19 H 1.48501 * 109.47081 * 210.00281 * 17 15 13 20 20 H 1.48503 * 109.46935 * 329.99503 * 17 15 13 21 21 C 1.52997 * 109.46930 * 274.99613 * 9 8 6 22 22 C 1.53005 * 109.47302 * 60.00077 * 21 9 8 23 23 C 1.53000 * 109.47350 * 180.02562 * 21 9 8 24 24 C 1.53006 * 109.47188 * 300.00126 * 21 9 8 25 25 C 1.34851 * 125.74776 * 180.02562 * 2 1 3 26 26 N 1.38013 * 126.44354 * 0.02562 * 25 2 1 27 27 H 1.09007 * 109.46914 * 269.97271 * 1 2 3 28 28 H 1.08993 * 109.46919 * 29.97428 * 1 2 3 29 29 H 1.08998 * 109.46810 * 149.98266 * 1 2 3 30 30 H 1.08002 * 125.90715 * 180.23009 * 4 3 2 31 31 H 0.97000 * 119.99736 * 0.26905 * 8 6 5 32 32 H 1.08999 * 109.47576 * 65.00122 * 11 9 8 33 33 H 1.09009 * 109.47046 * 185.00097 * 11 9 8 34 34 H 0.97005 * 120.00340 * 0.02562 * 12 11 9 35 35 H 0.97004 * 119.99849 * 179.97438 * 16 15 13 36 36 H 1.08993 * 109.46833 * 59.99888 * 22 21 9 37 37 H 1.08998 * 109.47292 * 180.02562 * 22 21 9 38 38 H 1.08998 * 109.46918 * 300.00250 * 22 21 9 39 39 H 1.09006 * 109.46542 * 59.99759 * 23 21 9 40 40 H 1.08998 * 109.47187 * 179.97438 * 23 21 9 41 41 H 1.08993 * 109.47040 * 300.00268 * 23 21 9 42 42 H 1.09007 * 109.46814 * 59.99905 * 24 21 9 43 43 H 1.08998 * 109.47361 * 179.97438 * 24 21 9 44 44 H 1.08996 * 109.47185 * 299.99959 * 24 21 9 45 45 H 0.96994 * 119.99543 * 179.97438 * 26 25 2 46 46 H 0.97000 * 119.99874 * 359.96895 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2823 1.1353 0.0000 4 6 3.5314 0.7650 0.0049 5 6 3.5728 -0.6492 -0.0007 6 6 4.7774 -1.4877 -0.0005 7 8 4.6747 -2.7003 0.0000 8 7 5.9973 -0.9148 -0.0064 9 6 7.1997 -1.7518 -0.0123 10 1 7.0140 -2.6503 -0.6008 11 6 8.3621 -0.9702 -0.6276 12 7 7.9782 -0.4901 -1.9573 13 6 8.8645 0.2390 -2.7043 14 1 9.8465 0.4605 -2.3129 15 6 8.5006 0.6944 -3.9641 16 7 7.3037 0.4250 -4.4408 17 14 9.7099 1.6885 -4.9834 18 1 10.5217 0.7709 -5.8223 19 1 8.9643 2.6293 -5.8576 20 1 10.6049 2.4558 -4.0803 21 6 7.5534 -2.1464 1.4230 22 6 6.3909 -2.9280 2.0384 23 6 8.8095 -3.0200 1.4170 24 6 7.8140 -0.8852 2.2491 25 6 2.2529 -1.0945 -0.0005 26 7 1.8308 -2.4085 -0.0016 27 1 -0.3633 -0.0005 1.0277 28 1 -0.3633 0.8902 -0.5134 29 1 -0.3633 -0.8898 -0.5141 30 1 4.3873 1.4237 0.0097 31 1 6.0792 0.0518 -0.0068 32 1 8.6059 -0.1200 0.0094 33 1 9.2324 -1.6210 -0.7136 34 1 7.0961 -0.6887 -2.3087 35 1 7.0492 0.7435 -5.3210 36 1 6.2053 -3.8264 1.4498 37 1 6.6427 -3.2086 3.0610 38 1 5.4964 -2.3052 2.0427 39 1 9.6375 -2.4627 0.9787 40 1 9.0617 -3.3007 2.4395 41 1 8.6243 -3.9184 0.8284 42 1 6.9194 -0.2624 2.2535 43 1 8.0656 -1.1662 3.2718 44 1 8.6422 -0.3284 1.8108 45 1 2.4823 -3.1270 -0.0022 46 1 0.8827 -2.6133 -0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755823921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:46:58 Heat of formation + Delta-G solvation = 44.502599 kcal Electronic energy + Delta-G solvation = -26909.505137 eV Core-core repulsion = 23256.870786 eV Total energy + Delta-G solvation = -3652.634351 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 309.191 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.21748 -39.51371 -37.03080 -34.92286 -34.31359 -33.13886 -32.75326 -30.94301 -28.71516 -27.65702 -27.12822 -27.01375 -26.20359 -23.73201 -22.41008 -21.39655 -20.69435 -19.83856 -18.42166 -17.90362 -17.10312 -16.52994 -16.04354 -15.77611 -15.47165 -15.17852 -14.60787 -14.42554 -13.83033 -13.74262 -13.49573 -13.32656 -13.20244 -12.99846 -12.79256 -12.77682 -12.54568 -12.01840 -11.81038 -11.68870 -11.25497 -11.20628 -11.11508 -10.97726 -10.76809 -10.72438 -10.60647 -10.38044 -10.15138 -9.82387 -9.66546 -9.32778 -8.96048 -8.82104 -8.38310 -7.70066 -6.86383 -5.70815 -2.99951 1.97743 2.26304 2.47099 3.46771 3.51851 3.53573 3.67023 3.83813 3.98267 4.43921 4.62680 4.92097 5.00103 5.07784 5.16730 5.17544 5.28526 5.35610 5.54327 5.61052 5.68197 5.77559 5.87251 5.93247 6.01933 6.04132 6.16962 6.20678 6.23313 6.28989 6.32979 6.43282 6.57529 6.58830 6.64775 6.67702 6.78025 6.88047 7.17201 7.34012 7.43937 7.74252 7.88495 8.19994 8.47065 8.87880 9.58808 10.16817 10.52118 11.51315 Molecular weight = 309.19amu Principal moments of inertia in cm(-1) A = 0.010478 B = 0.004942 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.652857 B = 5664.414106 C = 7615.669818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.405 5.405 3 N -0.310 5.310 4 C 0.119 3.881 5 C -0.363 4.363 6 C 0.607 3.393 7 O -0.573 6.573 8 N -0.705 5.705 9 C 0.153 3.847 10 H 0.085 0.915 11 C 0.141 3.859 12 N -0.730 5.730 13 C -0.240 4.240 14 H 0.069 0.931 15 C -0.012 4.012 16 N -0.930 5.930 17 Si 0.905 3.095 18 H -0.291 1.291 19 H -0.292 1.292 20 H -0.282 1.282 21 C -0.076 4.076 22 C -0.127 4.127 23 C -0.140 4.140 24 C -0.141 4.141 25 C 0.429 3.571 26 N -0.832 5.832 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.189 0.811 31 H 0.401 0.599 32 H 0.028 0.972 33 H 0.033 0.967 34 H 0.386 0.614 35 H 0.254 0.746 36 H 0.060 0.940 37 H 0.037 0.963 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.054 0.946 42 H 0.053 0.947 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.431 0.569 46 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.483 -4.597 14.314 18.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.193 5.193 3 N -0.129 5.129 4 C -0.071 4.071 5 C -0.382 4.382 6 C 0.397 3.603 7 O -0.455 6.455 8 N -0.353 5.353 9 C 0.048 3.952 10 H 0.103 0.897 11 C 0.014 3.986 12 N -0.375 5.375 13 C -0.371 4.371 14 H 0.087 0.913 15 C -0.208 4.208 16 N -0.578 5.578 17 Si 0.736 3.264 18 H -0.218 1.218 19 H -0.219 1.219 20 H -0.208 1.208 21 C -0.078 4.078 22 C -0.184 4.184 23 C -0.198 4.198 24 C -0.198 4.198 25 C 0.195 3.805 26 N -0.382 5.382 27 H 0.090 0.910 28 H 0.111 0.889 29 H 0.097 0.903 30 H 0.205 0.795 31 H 0.235 0.765 32 H 0.045 0.955 33 H 0.051 0.949 34 H 0.221 0.779 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.080 0.920 45 H 0.268 0.732 46 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -12.301 -4.310 14.245 19.309 hybrid contribution 0.678 -0.017 -0.886 1.116 sum -11.624 -4.327 13.359 18.229 Atomic orbital electron populations 1.21743 0.74660 1.04360 1.03004 1.48144 1.06209 1.02527 1.62441 1.77120 1.01890 1.05119 1.28761 1.23830 0.95131 0.93699 0.94405 1.19368 0.91016 0.93658 1.34169 1.16798 0.82208 0.86596 0.74708 1.90635 1.86981 1.14206 1.53719 1.45574 1.04748 1.10315 1.74678 1.21188 0.84649 0.94836 0.94525 0.89707 1.21093 0.93957 0.95617 0.87982 1.42365 1.17017 1.64288 1.13862 1.19203 0.95573 1.25330 0.97017 0.91258 1.24729 0.96785 1.01559 0.97726 1.69681 1.18904 1.50672 1.18540 0.86226 0.80176 0.79678 0.80312 1.21834 1.21873 1.20791 1.20895 0.95763 0.95676 0.95435 1.21861 0.97432 1.00436 0.98702 1.21884 0.97159 0.99604 1.01164 1.21908 1.01824 0.97265 0.98835 1.18043 0.89554 0.81803 0.91135 1.41743 1.10914 1.02809 1.82747 0.91029 0.88858 0.90325 0.79457 0.76472 0.95467 0.94942 0.77934 0.93598 0.92113 0.94420 0.92683 0.91982 0.93091 0.92664 0.92752 0.93438 0.91999 0.73203 0.77613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 11.25 59.85 0.67 1.46 16 2 N -0.40 -5.13 4.00 -66.81 -0.27 -5.40 16 3 N -0.31 -4.67 12.47 30.88 0.38 -4.29 16 4 C 0.12 1.79 11.49 -16.97 -0.20 1.60 16 5 C -0.36 -5.72 6.15 -104.82 -0.64 -6.37 16 6 C 0.61 10.36 6.14 -12.81 -0.08 10.28 16 7 O -0.57 -10.44 12.26 5.20 0.06 -10.38 16 8 N -0.70 -11.67 3.63 -55.08 -0.20 -11.87 16 9 C 0.15 2.61 1.69 -67.93 -0.11 2.50 16 10 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 11 C 0.14 2.76 5.10 -4.05 -0.02 2.74 16 12 N -0.73 -18.18 5.43 -59.91 -0.33 -18.51 16 13 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 14 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 15 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 16 N -0.93 -28.30 13.06 55.49 0.72 -27.57 16 17 Si 0.90 22.46 29.55 -169.99 -5.02 17.44 16 18 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.08 -1.08 0.62 -154.50 -0.10 -1.17 16 22 C -0.13 -1.81 7.00 37.16 0.26 -1.55 16 23 C -0.14 -1.84 8.12 37.16 0.30 -1.53 16 24 C -0.14 -1.83 7.97 37.16 0.30 -1.53 16 25 C 0.43 5.86 7.98 -153.77 -1.23 4.64 16 26 N -0.83 -8.76 9.02 31.40 0.28 -8.48 16 27 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 28 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.40 7.46 -51.93 -0.39 0.01 16 30 H 0.19 2.44 7.50 -52.49 -0.39 2.04 16 31 H 0.40 6.46 7.55 -40.82 -0.31 6.16 16 32 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 33 H 0.03 0.65 6.71 -51.92 -0.35 0.30 16 34 H 0.39 10.39 7.33 -40.82 -0.30 10.09 16 35 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.06 0.94 7.53 -51.93 -0.39 0.55 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.05 0.85 5.77 -51.93 -0.30 0.55 16 39 H 0.06 0.82 6.54 -51.93 -0.34 0.49 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.05 0.71 7.60 -51.93 -0.39 0.31 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.82 6.32 -51.93 -0.33 0.49 16 45 H 0.43 5.09 7.01 -40.82 -0.29 4.80 16 46 H 0.40 2.71 8.04 -40.82 -0.33 2.38 16 LS Contribution 363.85 15.07 5.48 5.48 Total: -1.00 -33.86 363.85 -6.87 -40.73 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -6.90 Total: 19.03 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.09 Total: 3.82 kcal Atomic # 7 Polarization: -76.72 SS G_CDS: 0.60 Total: -76.12 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.06 Total: -10.38 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.86 -6.87 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755823921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.232 kcal (2) G-P(sol) polarization free energy of solvation -33.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds