Wall clock time and date at job start Tue Mar 31 2020 09:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47128 * 2 1 4 4 C 1.53004 * 109.47432 * 174.99926 * 3 2 1 5 5 C 1.52991 * 109.47310 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47142 * 299.99994 * 5 4 3 7 7 N 1.46903 * 109.46968 * 179.97438 * 6 5 4 8 8 C 1.46901 * 110.99530 * 178.85216 * 7 6 5 9 9 C 1.53000 * 109.46752 * 179.23001 * 8 7 6 10 10 C 1.50704 * 115.55315 * 299.92159 * 9 8 7 11 11 H 1.08001 * 119.99468 * 269.17734 * 10 9 8 12 12 C 1.37872 * 119.99955 * 89.17028 * 10 9 8 13 13 N 1.31521 * 119.99961 * 169.57759 * 12 10 9 14 14 Si 1.86798 * 120.00207 * 349.58206 * 12 10 9 15 15 H 1.48503 * 109.46998 * 269.01908 * 14 12 10 16 16 H 1.48501 * 109.47353 * 29.01258 * 14 12 10 17 17 H 1.48495 * 109.47420 * 149.01859 * 14 12 10 18 18 C 1.53007 * 117.50037 * 85.59380 * 9 8 7 19 19 C 1.53001 * 117.49950 * 154.25116 * 9 8 7 20 20 C 1.50697 * 109.47287 * 300.00105 * 6 5 4 21 21 O 1.20822 * 120.00174 * 100.03641 * 20 6 5 22 22 O 1.34230 * 119.99568 * 280.03828 * 20 6 5 23 23 C 1.45206 * 116.99739 * 179.97438 * 22 20 6 24 24 C 1.53005 * 109.46996 * 60.00220 * 6 5 4 25 25 C 1.52998 * 109.46864 * 299.99656 * 24 6 5 26 26 H 1.09000 * 109.47178 * 60.00105 * 1 2 3 27 27 H 1.09002 * 109.47061 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47281 * 299.99880 * 1 2 3 29 29 H 1.08996 * 109.47374 * 240.00392 * 2 1 3 30 30 H 1.09000 * 109.47178 * 119.99895 * 2 1 3 31 31 H 1.08997 * 109.46940 * 54.99714 * 3 2 1 32 32 H 1.09001 * 109.46730 * 59.99429 * 4 3 2 33 33 H 1.09000 * 109.46745 * 299.99993 * 4 3 2 34 34 H 1.08994 * 109.47562 * 180.02562 * 5 4 3 35 35 H 1.09006 * 109.47229 * 59.99829 * 5 4 3 36 36 H 1.00893 * 111.00153 * 54.90146 * 7 6 5 37 37 H 1.09001 * 109.47340 * 59.23393 * 8 7 6 38 38 H 1.08998 * 109.47649 * 299.22522 * 8 7 6 39 39 H 0.96993 * 119.99838 * 180.02562 * 13 12 10 40 40 H 1.08998 * 117.49692 * 215.00555 * 18 9 8 41 41 H 1.08991 * 117.49466 * 0.02562 * 18 9 8 42 42 H 1.09003 * 117.49839 * 359.97438 * 19 9 8 43 43 H 1.09004 * 117.50421 * 144.99547 * 19 9 8 44 44 H 1.09003 * 109.47220 * 299.99801 * 23 22 20 45 45 H 1.09001 * 109.46990 * 60.00048 * 23 22 20 46 46 H 1.09001 * 109.47290 * 179.97438 * 23 22 20 47 47 H 1.08993 * 109.47179 * 60.00148 * 24 6 5 48 48 H 1.09000 * 109.46728 * 180.02562 * 24 6 5 49 49 H 1.08997 * 109.47202 * 300.00431 * 25 24 6 50 50 H 1.09000 * 109.46767 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4444 0.1257 5 6 4.0748 2.8868 0.1251 6 6 3.6701 3.5703 -1.1826 7 7 4.1593 4.9555 -1.1829 8 6 3.8119 5.6361 -2.4375 9 6 4.3200 7.0786 -2.3928 10 6 3.7622 7.9300 -1.2814 11 1 2.8661 8.5106 -1.4438 12 6 4.3958 7.9677 -0.0575 13 7 4.0366 8.8576 0.8418 14 14 5.7645 6.7549 0.3235 15 1 5.1891 5.5434 0.9608 16 1 6.4518 6.3724 -0.9361 17 1 6.7407 7.3847 1.2485 18 6 5.7681 7.3311 -2.8174 19 6 4.6165 7.7649 -3.7277 20 6 4.2709 2.8246 -2.3461 21 8 3.5958 2.0483 -2.9797 22 8 5.5562 3.0227 -2.6786 23 6 6.0680 2.2701 -3.8099 24 6 2.1452 3.5685 -1.3083 25 6 1.6352 2.1260 -1.3077 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.6053 1.9815 0.8418 32 1 3.9994 0.9053 -0.7160 33 1 3.8531 0.9571 1.0571 34 1 5.1611 2.8882 0.2142 35 1 3.6402 3.4263 0.9667 36 1 5.1540 4.9877 -1.0175 37 1 2.7291 5.6360 -2.5632 38 1 4.2749 5.1137 -3.2746 39 1 4.4826 8.8844 1.7027 40 1 6.3173 8.1129 -2.2928 41 1 6.3586 6.4696 -3.1290 42 1 4.4500 7.1886 -4.6378 43 1 4.4081 8.8323 -3.8022 44 1 5.9794 1.2029 -3.6064 45 1 5.4931 2.5189 -4.7019 46 1 7.1158 2.5237 -3.9710 47 1 1.7107 4.1079 -0.4668 48 1 1.8569 4.0550 -2.2401 49 1 2.0699 1.5866 -2.1492 50 1 0.5490 2.1247 -1.3977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602794708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:08 Heat of formation + Delta-G solvation = -59.626050 kcal Electronic energy + Delta-G solvation = -28551.147469 eV Core-core repulsion = 24965.245353 eV Total energy + Delta-G solvation = -3585.902116 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.209 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.18608 -38.53052 -37.35516 -36.22180 -35.17063 -32.18353 -31.90289 -30.68759 -28.64788 -27.62226 -25.79475 -24.66587 -23.86183 -22.62170 -22.01287 -21.51167 -20.11807 -19.67531 -18.78017 -17.31909 -16.79835 -16.48433 -16.10117 -15.44784 -14.84764 -14.70679 -14.45496 -14.08422 -13.98696 -13.69187 -13.63153 -13.10917 -13.07198 -12.76129 -12.73103 -12.33830 -12.25678 -12.14139 -11.89025 -11.63774 -11.59165 -11.42228 -11.16228 -10.93823 -10.84337 -10.76726 -10.66829 -10.58840 -10.39085 -10.10462 -9.98025 -9.76186 -9.57112 -9.34333 -8.87977 -8.43003 -8.34710 -7.88730 -5.94700 -3.96065 2.29497 2.79199 3.47530 3.50292 3.54261 4.37719 4.59429 4.64068 4.74654 4.85049 4.90533 5.04393 5.05595 5.07539 5.13262 5.19012 5.34113 5.38093 5.42247 5.46809 5.54314 5.60943 5.62458 5.72888 5.83284 5.87683 5.92829 5.97739 6.01253 6.03941 6.09620 6.15913 6.19705 6.22126 6.28977 6.33570 6.36332 6.38779 6.46509 6.50146 6.53738 6.79702 6.88861 7.08119 7.19769 7.51015 7.69546 7.89522 7.92561 8.62463 9.05516 9.71738 11.16591 Molecular weight = 309.21amu Principal moments of inertia in cm(-1) A = 0.014856 B = 0.005608 C = 0.004891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.331940 B = 4991.292874 C = 5723.494846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.087 4.087 4 C -0.115 4.115 5 C -0.109 4.109 6 C 0.133 3.867 7 N -0.644 5.644 8 C 0.091 3.909 9 C 0.001 3.999 10 C -0.477 4.477 11 H 0.072 0.928 12 C 0.088 3.912 13 N -0.903 5.903 14 Si 0.890 3.110 15 H -0.266 1.266 16 H -0.256 1.256 17 H -0.315 1.315 18 C -0.187 4.187 19 C -0.183 4.183 20 C 0.441 3.559 21 O -0.505 6.505 22 O -0.360 6.360 23 C 0.035 3.965 24 C -0.093 4.093 25 C -0.140 4.140 26 H 0.058 0.942 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.094 0.906 36 H 0.343 0.657 37 H 0.076 0.924 38 H 0.006 0.994 39 H 0.261 0.739 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.098 0.902 47 H 0.088 0.912 48 H 0.069 0.931 49 H 0.102 0.898 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -17.313 -4.016 17.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.105 4.105 4 C -0.153 4.153 5 C -0.146 4.146 6 C 0.040 3.960 7 N -0.279 5.279 8 C -0.037 4.037 9 C -0.001 4.001 10 C -0.514 4.514 11 H 0.090 0.910 12 C -0.114 4.114 13 N -0.541 5.541 14 Si 0.722 3.278 15 H -0.192 1.192 16 H -0.182 1.182 17 H -0.245 1.245 18 C -0.224 4.224 19 C -0.221 4.221 20 C 0.282 3.718 21 O -0.392 6.392 22 O -0.276 6.276 23 C -0.059 4.059 24 C -0.131 4.131 25 C -0.177 4.177 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.112 0.888 36 H 0.167 0.833 37 H 0.094 0.906 38 H 0.024 0.976 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.105 0.895 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.116 0.884 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.120 0.880 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.518 -17.229 -3.710 17.631 hybrid contribution 1.499 -1.055 -0.530 1.908 sum 0.981 -18.284 -4.240 18.794 Atomic orbital electron populations 1.21811 0.96011 1.01096 1.02084 1.21529 0.95834 0.96566 1.01490 1.21192 0.94758 0.95747 0.98810 1.21637 0.96097 0.95872 1.01737 1.21638 1.01354 0.95536 0.96112 1.21257 0.96577 0.88146 0.90033 1.60844 1.20782 1.09725 1.36593 1.21841 1.00549 0.94392 0.86899 1.19429 0.93896 0.91738 0.95001 1.20040 1.12188 1.25018 0.94163 0.90981 1.24866 0.96666 0.94194 0.95685 1.69951 1.43257 1.33885 1.07003 0.86908 0.80962 0.82048 0.77877 1.19237 1.18210 1.24468 1.22958 0.92534 1.02017 1.04894 1.22888 1.05016 1.00502 0.93725 1.25729 0.79773 0.80329 0.85950 1.90442 1.60605 1.35382 1.52723 1.86596 1.28914 1.63668 1.48411 1.23204 0.99607 0.95823 0.87294 1.21500 0.90289 0.97530 1.03740 1.22183 1.00695 0.95711 0.99115 0.92333 0.93269 0.92792 0.92229 0.92439 0.91074 0.92457 0.91451 0.91425 0.88778 0.83303 0.90624 0.97602 0.92932 0.89711 0.91484 0.91475 0.89459 0.92198 0.92093 0.88373 0.89359 0.91212 0.87967 0.91996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 9.67 37.16 0.36 -1.10 16 2 C -0.12 -1.22 5.40 -26.73 -0.14 -1.36 16 3 C -0.09 -1.05 2.19 -90.61 -0.20 -1.25 16 4 C -0.12 -1.45 4.98 -26.73 -0.13 -1.59 16 5 C -0.11 -1.63 4.97 -26.73 -0.13 -1.76 16 6 C 0.13 2.23 0.68 -132.75 -0.09 2.14 16 7 N -0.64 -12.83 3.65 -101.13 -0.37 -13.20 16 8 C 0.09 1.87 4.84 -3.82 -0.02 1.85 16 9 C 0.00 0.01 1.38 -155.65 -0.21 -0.20 16 10 C -0.48 -13.15 9.28 -34.44 -0.32 -13.47 16 11 H 0.07 2.20 8.06 -52.49 -0.42 1.77 16 12 C 0.09 2.48 5.45 -17.82 -0.10 2.39 16 13 N -0.90 -27.47 13.96 55.43 0.77 -26.69 16 14 Si 0.89 21.46 22.43 -169.99 -3.81 17.65 16 15 H -0.27 -6.10 6.77 56.52 0.38 -5.72 16 16 H -0.26 -5.76 4.59 56.52 0.26 -5.50 16 17 H -0.32 -7.95 7.11 56.52 0.40 -7.55 16 18 C -0.19 -3.99 6.87 -26.69 -0.18 -4.18 16 19 C -0.18 -3.76 9.95 -26.69 -0.27 -4.03 16 20 C 0.44 7.27 4.21 36.00 0.15 7.42 16 21 O -0.50 -8.52 12.64 -18.75 -0.24 -8.76 16 22 O -0.36 -5.71 9.72 -39.26 -0.38 -6.10 16 23 C 0.03 0.41 10.56 101.05 1.07 1.48 16 24 C -0.09 -1.46 4.35 -26.73 -0.12 -1.58 16 25 C -0.14 -1.89 4.66 -26.73 -0.12 -2.02 16 26 H 0.06 0.58 6.56 -51.93 -0.34 0.23 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.76 7.00 -51.93 -0.36 0.40 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.34 7.06 4.51 -39.30 -0.18 6.89 16 37 H 0.08 1.54 6.29 -51.93 -0.33 1.21 16 38 H 0.01 0.12 6.74 -51.93 -0.35 -0.23 16 39 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.08 1.91 7.57 -51.93 -0.39 1.52 16 41 H 0.07 1.33 8.10 -51.93 -0.42 0.91 16 42 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.09 1.82 8.14 -51.93 -0.42 1.39 16 44 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 45 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 46 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 48 H 0.07 1.15 6.41 -51.93 -0.33 0.82 16 49 H 0.10 1.54 4.94 -51.98 -0.26 1.28 16 50 H 0.06 0.77 6.56 -51.93 -0.34 0.43 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -30.26 365.33 -7.92 -38.18 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -8.94 Total: 10.66 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -0.46 Total: -17.25 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: 0.40 Total: -39.89 kcal Atomic # 8 Polarization: -14.24 SS G_CDS: -0.62 Total: -14.86 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -3.81 Total: 17.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.26 -7.92 -38.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602794708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.446 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds