Wall clock time and date at job start Tue Mar 31 2020 09:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46817 * 2 1 4 4 C 1.52999 * 109.46817 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46846 * 179.97438 * 4 3 2 6 6 C 1.46848 * 111.00158 * 65.36567 * 5 4 3 7 7 C 1.53031 * 109.52469 * 174.15826 * 6 5 4 8 8 C 1.53117 * 109.27828 * 59.18115 * 7 6 5 9 9 C 1.53121 * 109.16222 * 302.34482 * 8 7 6 10 10 C 1.46849 * 111.00312 * 301.15210 * 5 4 3 11 11 H 1.09007 * 109.45802 * 65.82130 * 10 5 4 12 12 C 1.50702 * 109.46276 * 305.86170 * 10 5 4 13 13 O 1.21287 * 119.99596 * 331.13004 * 12 10 5 14 14 N 1.34771 * 120.00105 * 151.14265 * 12 10 5 15 15 C 1.46502 * 119.99888 * 179.97438 * 14 12 10 16 16 C 1.53940 * 113.74049 * 253.73259 * 15 14 12 17 17 N 1.47814 * 86.04009 * 222.08385 * 16 15 14 18 18 C 1.36932 * 134.46053 * 204.64954 * 17 16 15 19 19 H 1.07999 * 120.00200 * 179.87384 * 18 17 16 20 20 C 1.38814 * 119.99742 * 359.86092 * 18 17 16 21 21 N 1.31613 * 120.00142 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99947 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47362 * 89.99975 * 22 20 18 24 24 H 1.48497 * 109.47235 * 210.00683 * 22 20 18 25 25 H 1.48509 * 109.46950 * 330.00450 * 22 20 18 26 26 C 1.47584 * 91.04936 * 24.55161 * 17 16 15 27 27 H 1.09004 * 109.47006 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47165 * 299.99629 * 1 2 3 29 29 H 1.08996 * 109.47429 * 60.00070 * 1 2 3 30 30 H 1.09003 * 109.47165 * 240.00371 * 2 1 3 31 31 H 1.08998 * 109.47111 * 119.99493 * 2 1 3 32 32 H 1.08998 * 109.46866 * 299.99643 * 3 2 1 33 33 H 1.09001 * 109.46907 * 59.99700 * 3 2 1 34 34 H 1.08996 * 109.47429 * 299.99930 * 4 3 2 35 35 H 1.09003 * 109.47165 * 60.00371 * 4 3 2 36 36 H 1.08999 * 109.45774 * 294.17609 * 6 5 4 37 37 H 1.09003 * 109.46347 * 54.14960 * 6 5 4 38 38 H 1.08999 * 109.50448 * 179.11687 * 7 6 5 39 39 H 1.08993 * 109.50706 * 299.24045 * 7 6 5 40 40 H 1.09005 * 109.52538 * 62.24788 * 8 7 6 41 41 H 1.08998 * 109.52551 * 182.37425 * 8 7 6 42 42 H 1.08999 * 109.50541 * 177.59682 * 9 8 7 43 43 H 1.09007 * 109.49865 * 297.67312 * 9 8 7 44 44 H 0.97007 * 120.00219 * 359.97438 * 14 12 10 45 45 H 1.08996 * 112.94470 * 25.33233 * 15 14 12 46 46 H 1.08994 * 113.77413 * 336.35367 * 16 15 14 47 47 H 1.09001 * 113.76626 * 107.75191 * 16 15 14 48 48 H 0.96998 * 120.00346 * 179.97438 * 21 20 18 49 49 H 1.08997 * 113.77235 * 221.15480 * 26 17 16 50 50 H 1.09002 * 113.76948 * 89.74987 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0595 2.8276 0.0000 6 6 3.6956 3.5150 1.2456 7 6 4.3434 4.9012 1.2728 8 6 3.8624 5.7078 0.0636 9 6 4.2106 4.9471 -1.2188 10 6 3.5668 3.5595 -1.1739 11 1 2.4837 3.6636 -1.1086 12 6 3.9233 2.7996 -2.4255 13 8 4.9105 2.0953 -2.4467 14 7 3.1454 2.9028 -3.5211 15 6 3.4923 2.1645 -4.7380 16 6 4.0613 3.0515 -5.8601 17 7 3.2154 2.2580 -6.7764 18 6 3.2663 1.9590 -8.1117 19 1 2.5035 1.3363 -8.5552 20 6 4.2984 2.4566 -8.8954 21 7 5.2282 3.2153 -8.3550 22 14 4.3675 2.0495 -10.7172 23 1 3.6216 3.0800 -11.4834 24 1 5.7828 2.0267 -11.1660 25 1 3.7527 0.7179 -10.9504 26 6 2.2957 1.9153 -5.6742 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 3.9329 0.9289 0.8908 35 1 3.9337 0.9287 -0.8892 36 1 2.6120 3.6193 1.2995 37 1 4.0473 2.9331 2.0976 38 1 4.0604 5.4172 2.1903 39 1 5.4276 4.7971 1.2328 40 1 2.7827 5.8454 0.1236 41 1 4.3537 6.6808 0.0558 42 1 3.8328 5.4958 -2.0815 43 1 5.2929 4.8443 -1.2984 44 1 2.3557 3.4660 -3.5040 45 1 4.0869 1.2729 -4.5391 46 1 3.7662 4.0981 -5.7853 47 1 5.1310 2.9206 -6.0238 48 1 5.9495 3.5627 -8.9025 49 1 1.9584 0.8790 -5.6895 50 1 1.4808 2.6274 -5.5445 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031237207.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:48 Heat of formation + Delta-G solvation = 7.580250 kcal Electronic energy + Delta-G solvation = -26963.834529 eV Core-core repulsion = 23413.139448 eV Total energy + Delta-G solvation = -3550.695081 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.46972 -38.57458 -37.14590 -35.71579 -33.51865 -33.01666 -31.94229 -31.02860 -28.56891 -27.47099 -25.26022 -24.82213 -24.05932 -22.91715 -22.21425 -21.49395 -20.37511 -19.70825 -19.07801 -16.90152 -16.77825 -16.17047 -15.91347 -15.42466 -15.01011 -14.88416 -14.61331 -14.42333 -14.12106 -13.81614 -13.65186 -13.37123 -13.24620 -13.00622 -12.63460 -12.53705 -12.30478 -11.87933 -11.62679 -11.59015 -11.44837 -11.42466 -11.31545 -11.21899 -10.98396 -10.89305 -10.84756 -10.76987 -10.53384 -10.52613 -10.34984 -10.03097 -9.54718 -9.24897 -8.81000 -8.41277 -8.27532 -6.92092 -5.77242 -3.11358 2.92901 3.32418 3.40132 3.44551 3.46694 3.90698 4.45104 4.58215 4.68205 4.71414 4.73617 4.80035 4.95933 5.00403 5.05043 5.10686 5.20505 5.21654 5.29637 5.45509 5.48113 5.51027 5.52292 5.56003 5.59735 5.60671 5.65208 5.77364 5.79735 5.89434 5.94314 6.00452 6.01185 6.03612 6.08202 6.19205 6.21927 6.24961 6.41661 6.55865 6.79104 6.90322 7.00891 7.24163 7.38140 7.56885 7.92453 7.96703 8.62365 9.02636 9.69053 10.55683 11.39395 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.016741 B = 0.003345 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.114350 B = 8369.428506 C = 9544.360347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.159 4.159 4 C 0.046 3.954 5 N -0.512 5.512 6 C 0.055 3.945 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.109 4.109 10 C 0.070 3.930 11 H 0.058 0.942 12 C 0.515 3.485 13 O -0.523 6.523 14 N -0.717 5.717 15 C 0.094 3.906 16 C 0.154 3.846 17 N -0.607 5.607 18 C -0.227 4.227 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.280 1.280 26 C 0.113 3.887 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.034 0.966 37 H 0.076 0.924 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.080 0.920 44 H 0.394 0.606 45 H 0.109 0.891 46 H 0.028 0.972 47 H 0.076 0.924 48 H 0.255 0.745 49 H 0.048 0.952 50 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.814 1.760 22.134 23.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.198 4.198 4 C -0.082 4.082 5 N -0.236 5.236 6 C -0.073 4.073 7 C -0.157 4.157 8 C -0.156 4.156 9 C -0.147 4.147 10 C -0.042 4.042 11 H 0.076 0.924 12 C 0.300 3.700 13 O -0.398 6.398 14 N -0.368 5.368 15 C -0.011 4.011 16 C 0.028 3.972 17 N -0.333 5.333 18 C -0.354 4.354 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.564 5.564 22 Si 0.744 3.256 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.205 1.205 26 C -0.014 4.014 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.093 0.907 35 H 0.110 0.890 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.099 0.901 44 H 0.227 0.773 45 H 0.127 0.873 46 H 0.046 0.954 47 H 0.095 0.905 48 H 0.065 0.935 49 H 0.066 0.934 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.407 1.226 21.740 22.697 hybrid contribution -1.369 0.294 -1.032 1.740 sum -7.776 1.521 20.707 22.171 Atomic orbital electron populations 1.21768 0.95953 1.01544 1.01616 1.21425 0.95758 0.96430 1.02197 1.22308 0.97944 0.97698 1.01819 1.22421 0.91989 0.89624 1.04149 1.61885 1.59286 1.01798 1.00623 1.22126 0.97794 0.95259 0.92073 1.21617 1.01686 0.94589 0.97800 1.21567 1.00860 0.98697 0.94466 1.21550 1.02486 0.92475 0.98192 1.21626 0.98012 0.94586 0.89950 0.92437 1.20314 0.83579 0.81913 0.84226 1.90696 1.26209 1.39356 1.83581 1.46193 1.28744 1.48881 1.12982 1.23855 0.98701 0.97161 0.81362 1.22703 0.98207 0.92709 0.83572 1.45718 1.25917 1.57367 1.04343 1.18979 1.08295 1.26301 0.81830 0.90092 1.24813 0.97403 0.99703 0.98333 1.69826 1.14323 1.37514 1.34755 0.86101 0.76978 0.77917 0.84626 1.21586 1.21543 1.20546 1.22862 0.92892 0.98309 0.87364 0.92801 0.93077 0.92697 0.91685 0.92113 0.91950 0.92120 0.90721 0.88991 0.94750 0.90575 0.91606 0.90841 0.92209 0.91349 0.90838 0.90136 0.77290 0.87285 0.95435 0.90537 0.93523 0.93360 0.94849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.12 -1.10 5.93 -26.73 -0.16 -1.26 16 3 C -0.16 -1.54 4.52 -26.73 -0.12 -1.66 16 4 C 0.05 0.53 4.86 -3.82 -0.02 0.51 16 5 N -0.51 -6.11 4.46 -228.08 -1.02 -7.13 16 6 C 0.06 0.51 5.03 -3.84 -0.02 0.49 16 7 C -0.12 -1.00 6.09 -26.65 -0.16 -1.16 16 8 C -0.12 -1.02 6.00 -26.61 -0.16 -1.18 16 9 C -0.11 -1.21 5.36 -26.65 -0.14 -1.36 16 10 C 0.07 0.85 1.64 -68.88 -0.11 0.74 16 11 H 0.06 0.61 6.61 -51.93 -0.34 0.26 16 12 C 0.52 8.14 5.89 -10.99 -0.06 8.07 16 13 O -0.52 -10.48 14.78 5.55 0.08 -10.40 16 14 N -0.72 -11.01 5.37 -55.33 -0.30 -11.31 16 15 C 0.09 1.84 4.40 -70.14 -0.31 1.53 16 16 C 0.15 3.72 7.33 -2.84 -0.02 3.70 16 17 N -0.61 -15.66 3.70 -177.86 -0.66 -16.31 16 18 C -0.23 -6.40 10.70 -15.06 -0.16 -6.56 16 19 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 20 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 21 N -0.92 -27.63 11.39 55.49 0.63 -27.00 16 22 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.11 2.25 8.69 -2.96 -0.03 2.23 16 27 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.66 6.45 -51.93 -0.34 0.32 16 33 H 0.06 0.54 6.66 -51.93 -0.35 0.19 16 34 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 35 H 0.09 1.35 6.00 -51.93 -0.31 1.04 16 36 H 0.03 0.29 6.74 -51.93 -0.35 -0.06 16 37 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 44 H 0.39 4.94 8.71 -40.82 -0.36 4.59 16 45 H 0.11 2.34 7.51 -51.93 -0.39 1.95 16 46 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.08 2.11 7.16 -51.93 -0.37 1.74 16 48 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.03 0.62 8.11 -51.93 -0.42 0.19 16 LS Contribution 384.53 15.07 5.79 5.79 Total: -1.00 -32.66 384.53 -10.80 -43.46 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -9.10 Total: 2.70 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.20 Total: 2.94 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -1.34 Total: -61.75 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.08 Total: -10.40 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.66 -10.80 -43.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031237207.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.038 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds