Wall clock time and date at job start Tue Mar 31 2020 09:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47048 * 2 1 4 4 C 1.52995 * 109.47102 * 179.97438 * 3 2 1 5 5 N 1.46896 * 109.47188 * 179.97438 * 4 3 2 6 6 C 1.46847 * 110.99960 * 75.71842 * 5 4 3 7 7 C 1.53039 * 109.52649 * 185.83806 * 6 5 4 8 8 C 1.53116 * 109.27594 * 300.82433 * 7 6 5 9 9 C 1.53111 * 109.16426 * 57.65326 * 8 7 6 10 10 C 1.46851 * 111.00207 * 199.92872 * 5 4 3 11 11 H 1.09008 * 109.45857 * 294.17582 * 10 5 4 12 12 C 1.50701 * 109.45371 * 54.14751 * 10 5 4 13 13 O 1.21277 * 119.99424 * 29.03450 * 12 10 5 14 14 N 1.34767 * 120.00031 * 209.02758 * 12 10 5 15 15 C 1.46503 * 120.00033 * 180.02562 * 14 12 10 16 16 C 1.53942 * 113.74192 * 253.74270 * 15 14 12 17 17 N 1.47808 * 86.03917 * 222.08156 * 16 15 14 18 18 C 1.36931 * 134.45980 * 204.64399 * 17 16 15 19 19 H 1.08002 * 120.00347 * 179.87138 * 18 17 16 20 20 C 1.38814 * 120.00029 * 359.86419 * 18 17 16 21 21 N 1.31616 * 119.99857 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00019 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47178 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46898 * 120.00616 * 22 20 18 25 25 H 1.48499 * 109.47381 * 240.00538 * 22 20 18 26 26 C 1.47578 * 91.04978 * 24.55054 * 17 16 15 27 27 H 1.09002 * 109.47354 * 300.00159 * 1 2 3 28 28 H 1.09007 * 109.46880 * 60.00051 * 1 2 3 29 29 H 1.09002 * 109.47413 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47354 * 239.99841 * 2 1 3 31 31 H 1.08997 * 109.46859 * 119.99409 * 2 1 3 32 32 H 1.09002 * 109.47173 * 59.99731 * 3 2 1 33 33 H 1.08991 * 109.46927 * 299.99877 * 3 2 1 34 34 H 1.09002 * 109.47025 * 60.00009 * 4 3 2 35 35 H 1.09002 * 109.47451 * 300.00479 * 4 3 2 36 36 H 1.09005 * 109.46168 * 65.82150 * 6 5 4 37 37 H 1.09001 * 109.46601 * 305.85669 * 6 5 4 38 38 H 1.09002 * 109.49966 * 60.76240 * 7 6 5 39 39 H 1.08993 * 109.50376 * 180.88044 * 7 6 5 40 40 H 1.09005 * 109.52217 * 177.55743 * 8 7 6 41 41 H 1.08999 * 109.52315 * 297.74063 * 8 7 6 42 42 H 1.08998 * 109.50722 * 62.28346 * 9 8 7 43 43 H 1.09004 * 109.50597 * 182.36469 * 9 8 7 44 44 H 0.97002 * 120.00424 * 0.02562 * 14 12 10 45 45 H 1.08998 * 112.94519 * 25.33321 * 15 14 12 46 46 H 1.09004 * 113.76953 * 336.34969 * 16 15 14 47 47 H 1.09004 * 113.76806 * 107.74398 * 16 15 14 48 48 H 0.96998 * 119.99846 * 179.97438 * 21 20 18 49 49 H 1.09001 * 113.77079 * 221.15310 * 26 17 16 50 50 H 1.08998 * 113.77145 * 89.75103 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.9156 3.4372 1.3282 7 6 4.2977 4.9173 1.2557 8 6 5.7444 5.0427 0.7701 9 6 5.8783 4.3578 -0.5927 10 6 5.4504 2.8938 -0.4667 11 1 6.0980 2.3864 0.2484 12 6 5.5615 2.2206 -1.8104 13 8 4.6092 2.2048 -2.5612 14 7 6.7191 1.6364 -2.1777 15 6 6.8272 0.9825 -3.4843 16 6 6.8336 -0.5551 -3.4091 17 7 7.9046 -0.4982 -4.4262 18 6 8.3679 -1.3638 -5.3807 19 1 9.1882 -1.0737 -6.0204 20 6 7.7831 -2.6144 -5.5260 21 7 6.7831 -2.9678 -4.7466 22 14 8.4146 -3.7950 -6.8286 23 1 9.5365 -3.1626 -7.5678 24 1 8.8916 -5.0415 -6.1774 25 1 7.3179 -4.1198 -7.7758 26 6 8.2725 0.8665 -4.0016 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9563 -0.8899 34 1 3.9336 0.9286 -0.8891 35 1 3.9330 0.9288 0.8908 36 1 4.5704 2.9272 2.0348 37 1 2.8814 3.3449 1.6600 38 1 3.6344 5.4307 0.5596 39 1 4.2057 5.3657 2.2449 40 1 6.0069 6.0964 0.6755 41 1 6.4118 4.5630 1.4860 42 1 5.2398 4.8623 -1.3179 43 1 6.9154 4.4070 -0.9245 44 1 7.4807 1.6489 -1.5771 45 1 6.1289 1.3830 -4.2191 46 1 7.1623 -0.9466 -2.4463 47 1 5.9122 -1.0162 -3.7650 48 1 6.3743 -3.8415 -4.8484 49 1 8.4979 1.5385 -4.8297 50 1 9.0248 0.8936 -3.2133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031237208.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:54 Heat of formation + Delta-G solvation = 5.893577 kcal Electronic energy + Delta-G solvation = -26685.032186 eV Core-core repulsion = 23134.263965 eV Total energy + Delta-G solvation = -3550.768221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.33018 -38.51725 -37.14494 -35.63834 -33.50299 -33.02368 -31.94909 -31.04792 -28.67866 -27.47471 -24.99827 -24.83568 -24.17764 -22.85492 -22.15149 -20.78180 -20.40472 -19.84997 -19.33725 -17.00099 -16.80742 -16.23517 -15.60979 -15.34397 -15.05511 -14.86880 -14.67337 -14.26561 -14.07286 -13.80626 -13.61869 -13.35617 -13.29444 -12.94927 -12.66888 -12.48688 -12.26927 -11.88129 -11.56518 -11.46113 -11.43230 -11.35049 -11.18468 -11.01713 -10.93338 -10.89462 -10.85176 -10.78027 -10.53209 -10.37872 -10.27431 -10.02048 -9.56142 -9.25806 -8.82533 -8.41521 -8.34455 -6.93044 -5.78510 -3.12444 2.91335 3.31691 3.39182 3.44017 3.46546 3.85765 4.44071 4.60290 4.65866 4.72740 4.93022 5.00238 5.01190 5.05116 5.12981 5.17555 5.20782 5.29523 5.35772 5.46875 5.47522 5.50191 5.58254 5.61448 5.68075 5.72035 5.75456 5.83307 5.87826 5.93242 5.95643 6.01617 6.06433 6.11933 6.17964 6.21510 6.35705 6.40578 6.42052 6.55549 6.77707 6.95086 7.04753 7.22646 7.36899 7.55256 7.91568 7.95551 8.60945 9.01657 9.68046 10.54564 11.38261 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.014060 B = 0.003457 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.031784 B = 8096.402786 C = 9812.020610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.126 4.126 3 C -0.106 4.106 4 C 0.050 3.950 5 N -0.515 5.515 6 C 0.056 3.944 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.106 4.106 10 C 0.071 3.929 11 H 0.055 0.945 12 C 0.513 3.487 13 O -0.521 6.521 14 N -0.718 5.718 15 C 0.093 3.907 16 C 0.155 3.845 17 N -0.607 5.607 18 C -0.225 4.225 19 H 0.082 0.918 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.914 3.086 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.113 3.887 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.085 0.915 35 H 0.030 0.970 36 H 0.031 0.969 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.394 0.606 45 H 0.110 0.890 46 H 0.027 0.973 47 H 0.076 0.924 48 H 0.254 0.746 49 H 0.049 0.951 50 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.618 14.468 15.653 22.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.144 4.144 4 C -0.077 4.077 5 N -0.240 5.240 6 C -0.072 4.072 7 C -0.156 4.156 8 C -0.156 4.156 9 C -0.144 4.144 10 C -0.041 4.041 11 H 0.073 0.927 12 C 0.297 3.703 13 O -0.396 6.396 14 N -0.369 5.369 15 C -0.012 4.012 16 C 0.028 3.972 17 N -0.334 5.334 18 C -0.353 4.353 19 H 0.100 0.900 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.744 3.256 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C -0.014 4.014 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.228 0.772 45 H 0.128 0.872 46 H 0.045 0.955 47 H 0.094 0.906 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -6.589 14.411 14.560 21.519 hybrid contribution 1.363 -1.322 0.330 1.927 sum -5.226 13.088 14.890 20.502 Atomic orbital electron populations 1.21739 0.95924 1.01402 1.01583 1.21505 0.95792 0.96939 1.02199 1.21488 0.94203 0.96390 1.02302 1.22258 0.96287 0.87916 1.01287 1.61648 1.18010 1.18995 1.25384 1.22153 1.01267 0.94874 0.88879 1.21609 0.96825 0.95894 1.01276 1.21571 0.96908 1.00670 0.96477 1.21521 1.01536 0.92882 0.98448 1.21627 0.90702 0.97389 0.94422 0.92713 1.20325 0.83192 0.78473 0.88275 1.90712 1.37107 1.58364 1.53404 1.46212 1.13903 1.56804 1.19973 1.23871 0.98569 0.95179 0.83549 1.22699 0.93964 0.89305 0.91213 1.45721 1.38024 1.12930 1.36691 1.19031 1.13784 0.94231 1.08238 0.90008 1.24816 0.98501 0.97494 0.99494 1.69839 1.25415 1.20947 1.40252 0.86026 0.77969 0.80876 0.80747 1.20400 1.21719 1.21581 1.22866 0.93328 0.88725 0.96523 0.93122 0.92642 0.92906 0.91508 0.92446 0.92659 0.90863 0.89661 0.95200 0.95054 0.90326 0.90866 0.91593 0.91421 0.92132 0.90252 0.91005 0.77226 0.87220 0.95530 0.90551 0.93595 0.93272 0.94791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 37.16 0.37 -1.11 16 2 C -0.13 -1.44 5.93 -26.73 -0.16 -1.60 16 3 C -0.11 -1.26 5.32 -26.73 -0.14 -1.41 16 4 C 0.05 0.66 4.60 -3.83 -0.02 0.64 16 5 N -0.52 -6.40 4.18 -228.07 -0.95 -7.36 16 6 C 0.06 0.54 5.29 -3.83 -0.02 0.52 16 7 C -0.12 -0.97 6.09 -26.65 -0.16 -1.13 16 8 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 9 C -0.11 -1.08 5.36 -26.65 -0.14 -1.22 16 10 C 0.07 0.86 2.23 -68.87 -0.15 0.71 16 11 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 12 C 0.51 8.13 5.62 -10.99 -0.06 8.07 16 13 O -0.52 -10.40 15.08 5.56 0.08 -10.32 16 14 N -0.72 -11.06 5.37 -55.34 -0.30 -11.35 16 15 C 0.09 1.82 4.40 -70.14 -0.31 1.51 16 16 C 0.15 3.72 7.33 -2.84 -0.02 3.69 16 17 N -0.61 -15.65 3.70 -177.89 -0.66 -16.31 16 18 C -0.23 -6.36 10.70 -15.06 -0.16 -6.52 16 19 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -27.56 11.39 55.49 0.63 -26.92 16 22 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.11 2.25 8.69 -2.97 -0.03 2.22 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.58 6.84 -51.93 -0.36 0.22 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 1.39 5.68 -51.93 -0.29 1.10 16 35 H 0.03 0.36 8.00 -51.93 -0.42 -0.05 16 36 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.71 6.72 -51.93 -0.35 0.36 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.39 4.94 8.71 -40.82 -0.36 4.58 16 45 H 0.11 2.35 7.51 -51.93 -0.39 1.96 16 46 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 2.09 7.17 -51.93 -0.37 1.72 16 48 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 49 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.03 0.62 8.11 -51.93 -0.42 0.20 16 LS Contribution 388.71 15.07 5.86 5.86 Total: -1.00 -32.57 388.71 -10.89 -43.46 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -9.26 Total: 2.73 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -1.26 Total: 2.99 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -1.28 Total: -61.94 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.08 Total: -10.32 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.57 -10.89 -43.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031237208.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.352 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.458 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds