Wall clock time and date at job start Tue Mar 31 2020 09:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47147 * 2 1 4 4 C 1.52995 * 109.47207 * 239.99863 * 2 1 3 5 5 N 1.46900 * 109.47285 * 294.70999 * 4 2 1 6 6 C 1.47846 * 110.99673 * 285.30269 * 5 4 2 7 7 C 1.54908 * 104.79764 * 213.63481 * 6 5 4 8 8 C 1.55145 * 101.65346 * 37.07260 * 7 6 5 9 9 H 1.08995 * 110.85700 * 82.79060 * 8 7 6 10 10 C 1.50693 * 110.70684 * 205.96576 * 8 7 6 11 11 O 1.21286 * 119.99956 * 113.59744 * 10 8 7 12 12 N 1.34779 * 120.00221 * 293.59517 * 10 8 7 13 13 C 1.46500 * 120.00193 * 180.02562 * 12 10 8 14 14 C 1.52992 * 109.47022 * 180.02562 * 13 12 10 15 15 H 1.09008 * 112.96515 * 306.67677 * 14 13 12 16 16 C 1.53947 * 113.76950 * 174.99954 * 14 13 12 17 17 C 1.53952 * 86.29020 * 222.08975 * 16 14 13 18 18 N 1.47577 * 113.77242 * 78.50220 * 14 13 12 19 19 C 1.36939 * 134.49338 * 318.94962 * 18 14 13 20 20 H 1.07997 * 119.99883 * 359.97438 * 19 18 14 21 21 C 1.38815 * 119.99971 * 179.97438 * 19 18 14 22 22 N 1.31623 * 120.00118 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00068 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.46966 * 359.97438 * 23 21 19 25 25 H 1.48490 * 109.47206 * 119.99489 * 23 21 19 26 26 H 1.48500 * 109.46898 * 239.99993 * 23 21 19 27 27 C 1.47440 * 111.00346 * 164.46214 * 5 4 2 28 28 H 1.08998 * 109.47155 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47643 * 300.00321 * 1 2 3 30 30 H 1.09001 * 109.46890 * 60.00458 * 1 2 3 31 31 H 1.09001 * 109.46890 * 119.99542 * 2 1 3 32 32 H 1.09001 * 109.47019 * 299.60163 * 3 2 1 33 33 H 1.08995 * 109.47189 * 59.60031 * 3 2 1 34 34 H 1.08998 * 109.47319 * 179.60326 * 3 2 1 35 35 H 1.09003 * 109.47489 * 54.70955 * 4 2 1 36 36 H 1.09005 * 109.47382 * 174.70708 * 4 2 1 37 37 H 1.09000 * 110.37859 * 332.46687 * 6 5 4 38 38 H 1.08999 * 110.37658 * 94.80594 * 6 5 4 39 39 H 1.08995 * 110.99306 * 278.97921 * 7 6 5 40 40 H 1.08999 * 111.02461 * 155.17555 * 7 6 5 41 41 H 0.96994 * 119.99433 * 0.02562 * 12 10 8 42 42 H 1.09001 * 109.46921 * 300.00026 * 13 12 10 43 43 H 1.08994 * 109.46875 * 59.99856 * 13 12 10 44 44 H 1.08992 * 113.74342 * 336.43868 * 16 14 13 45 45 H 1.08998 * 113.74032 * 107.74733 * 16 14 13 46 46 H 1.08997 * 113.76813 * 137.91206 * 17 16 14 47 47 H 1.09003 * 113.76636 * 269.30569 * 17 16 14 48 48 H 0.97000 * 119.99735 * 179.97438 * 22 21 19 49 49 H 1.08998 * 109.88914 * 242.66076 * 27 5 4 50 50 H 1.09007 * 109.88830 * 3.84740 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6574 -2.1382 -1.1870 6 6 2.4973 -2.8716 -0.2163 7 6 2.6465 -4.2921 -0.8160 8 6 2.7475 -3.9828 -2.3329 9 1 3.7665 -3.7094 -2.6062 10 6 2.2761 -5.1587 -3.1490 11 8 1.2692 -5.0673 -3.8189 12 7 2.9734 -6.3120 -3.1345 13 6 2.5154 -7.4550 -3.9283 14 6 3.4777 -8.6285 -3.7349 15 1 4.5164 -8.3640 -3.9335 16 6 3.0236 -9.9245 -4.4306 17 6 3.4749 -10.6514 -3.1508 18 7 3.2792 -9.3580 -2.4675 19 6 3.0180 -8.9848 -1.1761 20 1 2.9167 -7.9390 -0.9262 21 6 2.8836 -9.9506 -0.1881 22 7 3.0067 -11.2252 -0.4927 23 14 2.5281 -9.4415 1.5736 24 1 2.4372 -7.9613 1.6524 25 1 1.2423 -10.0408 2.0122 26 1 3.6229 -9.9174 2.4569 27 6 1.7950 -2.7811 -2.5067 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6825 1.9543 -0.8935 33 1 1.6708 1.9584 0.8863 34 1 3.1300 1.4425 0.0071 35 1 1.6014 -0.2651 -2.1367 36 1 3.1259 -0.6399 -1.2979 37 1 3.4731 -2.3950 -0.1224 38 1 2.0026 -2.9193 0.7538 39 1 1.7692 -4.9015 -0.5993 40 1 3.5541 -4.7757 -0.4549 41 1 3.7784 -6.3852 -2.5984 42 1 1.5170 -7.7468 -3.6026 43 1 2.4872 -7.1775 -4.9819 44 1 1.9493 -9.9742 -4.6080 45 1 3.6131 -10.1796 -5.3112 46 1 2.7869 -11.4305 -2.8223 47 1 4.5132 -10.9821 -3.1763 48 1 2.9131 -11.9000 0.1978 49 1 0.8214 -3.1268 -2.8541 50 1 2.2165 -2.0742 -3.2215 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038338708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:13 Heat of formation + Delta-G solvation = 6.928647 kcal Electronic energy + Delta-G solvation = -26392.301742 eV Core-core repulsion = 22841.578405 eV Total energy + Delta-G solvation = -3550.723337 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.12751 -38.61647 -37.79916 -35.66249 -34.07592 -32.21601 -31.42872 -29.20799 -28.03784 -27.62658 -27.26671 -25.52943 -23.38581 -22.79200 -21.75261 -21.24198 -19.97626 -19.82042 -19.03223 -17.40095 -16.54834 -16.31812 -15.63773 -15.40816 -15.13508 -14.98735 -14.47478 -14.15831 -13.88627 -13.71890 -13.64942 -13.40944 -13.20280 -12.87049 -12.46421 -12.42002 -12.10456 -11.93893 -11.89387 -11.53308 -11.43482 -11.28629 -11.11578 -11.09823 -11.03845 -10.93285 -10.82018 -10.76256 -10.63551 -10.52964 -10.01565 -9.76100 -9.62988 -9.30859 -8.82141 -8.59049 -8.38508 -6.91315 -5.78332 -3.10863 2.92079 3.36203 3.40848 3.44391 3.49054 3.85679 4.40929 4.43424 4.54982 4.71404 4.73749 4.89334 5.02321 5.09817 5.22056 5.22416 5.29207 5.31624 5.39145 5.43629 5.44413 5.54128 5.57979 5.60677 5.70805 5.71290 5.77043 5.83698 5.89347 5.90469 5.93594 6.08147 6.10128 6.14403 6.20773 6.28783 6.30964 6.39277 6.60622 6.70470 6.85302 6.89444 6.98025 7.23097 7.39487 7.57778 7.88543 7.96613 8.55126 9.02397 9.69363 10.57607 11.38531 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.003372 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.138711 B = 8301.191686 C = 9705.050937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 C -0.147 4.147 4 C 0.054 3.946 5 N -0.526 5.526 6 C 0.044 3.956 7 C -0.118 4.118 8 C -0.132 4.132 9 H 0.096 0.904 10 C 0.521 3.479 11 O -0.548 6.548 12 N -0.712 5.712 13 C 0.123 3.877 14 C 0.126 3.874 15 H 0.049 0.951 16 C -0.156 4.156 17 C 0.158 3.842 18 N -0.603 5.603 19 C -0.218 4.218 20 H 0.079 0.921 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.906 3.094 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.059 3.941 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.034 0.966 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.402 0.598 42 H 0.072 0.928 43 H 0.059 0.941 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.026 0.974 48 H 0.252 0.748 49 H 0.100 0.900 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.530 19.145 -2.782 19.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.110 4.110 3 C -0.205 4.205 4 C -0.074 4.074 5 N -0.249 5.249 6 C -0.083 4.083 7 C -0.157 4.157 8 C -0.154 4.154 9 H 0.114 0.886 10 C 0.306 3.694 11 O -0.427 6.427 12 N -0.361 5.361 13 C -0.002 4.002 14 C 0.019 3.981 15 H 0.066 0.934 16 C -0.195 4.195 17 C 0.033 3.967 18 N -0.329 5.329 19 C -0.345 4.345 20 H 0.097 0.903 21 C -0.204 4.204 22 N -0.567 5.567 23 Si 0.737 3.263 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.218 1.218 27 C -0.069 4.069 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.236 0.764 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.092 0.908 47 H 0.044 0.956 48 H 0.063 0.937 49 H 0.118 0.882 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.218 19.125 -2.770 19.326 hybrid contribution 1.321 0.170 1.089 1.720 sum 1.539 19.295 -1.681 19.429 Atomic orbital electron populations 1.21720 0.94515 1.02740 1.00616 1.21075 0.96863 0.95159 0.97938 1.21832 1.00685 0.96191 1.01808 1.22433 0.97704 0.88678 0.98616 1.63614 1.52918 1.01825 1.06585 1.23088 0.95431 0.92918 0.96896 1.22720 1.03853 0.97287 0.91825 1.22501 1.01083 0.95148 0.96678 0.88550 1.20189 0.83647 0.83856 0.81667 1.90657 1.25341 1.83441 1.43243 1.45955 1.29226 1.12370 1.48566 1.21753 0.99607 0.84869 0.93926 1.22495 0.95581 0.91596 0.88478 0.93418 1.23775 1.00914 0.97024 0.97799 1.22204 0.97727 0.90914 0.85837 1.46085 1.82017 1.01983 1.02819 1.18982 1.40897 0.92348 0.82296 0.90291 1.24765 1.02426 0.95337 0.97905 1.69829 1.55893 0.98924 1.32046 0.86133 0.77595 0.77644 0.84924 1.20432 1.21724 1.21844 1.22770 1.00753 0.93257 0.90134 0.91278 0.93587 0.93261 0.91285 0.92730 0.92567 0.92982 0.90966 0.94770 0.93440 0.89952 0.89685 0.89833 0.76409 0.90988 0.92267 0.90491 0.92828 0.90804 0.95594 0.93744 0.88227 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 9.08 37.16 0.34 -0.93 16 2 C -0.09 -0.79 2.97 -90.62 -0.27 -1.06 16 3 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 4 C 0.05 0.51 4.06 -3.83 -0.02 0.50 16 5 N -0.53 -6.05 4.59 -231.24 -1.06 -7.11 16 6 C 0.04 0.49 5.99 -2.30 -0.01 0.47 16 7 C -0.12 -1.50 6.51 -24.59 -0.16 -1.66 16 8 C -0.13 -1.68 3.34 -89.95 -0.30 -1.98 16 9 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 10 C 0.52 8.52 7.13 -10.99 -0.08 8.44 16 11 O -0.55 -10.79 15.42 5.55 0.09 -10.70 16 12 N -0.71 -11.69 5.53 -60.30 -0.33 -12.03 16 13 C 0.12 2.20 5.54 -4.05 -0.02 2.18 16 14 C 0.13 2.39 4.33 -66.87 -0.29 2.10 16 15 H 0.05 0.87 8.14 -51.92 -0.42 0.44 16 16 C -0.16 -2.83 7.86 -25.80 -0.20 -3.03 16 17 C 0.16 3.61 7.52 -2.97 -0.02 3.58 16 18 N -0.60 -14.49 3.57 -170.74 -0.61 -15.10 16 19 C -0.22 -5.74 10.51 -15.06 -0.16 -5.90 16 20 H 0.08 1.99 7.80 -52.49 -0.41 1.58 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.92 -26.82 11.38 55.49 0.63 -26.18 16 23 Si 0.91 21.76 29.55 -169.99 -5.02 16.73 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.06 0.74 6.27 -2.83 -0.02 0.72 16 28 H 0.07 0.74 7.76 -51.93 -0.40 0.34 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.63 7.57 -51.93 -0.39 0.24 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 36 H 0.03 0.31 7.69 -51.93 -0.40 -0.09 16 37 H 0.05 0.47 7.53 -51.93 -0.39 0.07 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 40 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.40 6.22 8.47 -40.82 -0.35 5.87 16 42 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.08 1.39 8.10 -51.93 -0.42 0.96 16 45 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 49 H 0.10 1.51 6.80 -51.93 -0.35 1.16 16 50 H 0.05 0.62 7.47 -51.93 -0.39 0.23 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -30.78 393.57 -10.68 -41.46 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -9.33 Total: 4.58 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: -0.97 Total: 2.41 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -1.37 Total: -60.41 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.78 -10.68 -41.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038338708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.391 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds