Wall clock time and date at job start Tue Mar 31 2020 10:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.87826 * 2 1 4 4 C 1.54328 * 110.00921 * 238.90429 * 2 1 3 5 5 H 1.09009 * 110.72116 * 336.68251 * 4 2 1 6 6 N 1.46500 * 110.72053 * 99.95136 * 4 2 1 7 7 C 1.34774 * 120.00296 * 204.99530 * 6 4 2 8 8 O 1.21279 * 120.00014 * 0.02562 * 7 6 4 9 9 C 1.50705 * 120.00038 * 180.02562 * 7 6 4 10 10 C 1.52996 * 109.46909 * 180.02562 * 9 7 6 11 11 N 1.46906 * 109.46881 * 180.02562 * 10 9 7 12 12 C 1.46845 * 110.99890 * 294.20547 * 11 10 9 13 13 C 1.53035 * 109.52041 * 174.15849 * 12 11 10 14 14 C 1.53118 * 109.27849 * 59.18528 * 13 12 11 15 15 C 1.53121 * 109.15978 * 302.34496 * 14 13 12 16 16 C 1.46846 * 110.99772 * 169.99729 * 11 10 9 17 17 C 1.55152 * 102.94497 * 218.31948 * 4 2 1 18 18 C 1.54692 * 101.67423 * 35.33491 * 17 4 2 19 19 N 1.47018 * 109.88226 * 121.02444 * 2 1 3 20 20 C 1.36942 * 125.64755 * 298.46629 * 19 2 1 21 21 H 1.08006 * 119.99565 * 349.28136 * 20 19 2 22 22 C 1.38808 * 120.00307 * 169.27290 * 20 19 2 23 23 N 1.31624 * 119.99681 * 350.84003 * 22 20 19 24 24 Si 1.86802 * 120.00157 * 170.83415 * 22 20 19 25 25 H 1.48490 * 109.46927 * 85.24224 * 24 22 20 26 26 H 1.48501 * 109.46800 * 205.24364 * 24 22 20 27 27 H 1.48501 * 109.46726 * 325.24070 * 24 22 20 28 28 H 1.09005 * 109.46747 * 300.43562 * 1 2 3 29 29 H 1.09003 * 109.47322 * 60.43159 * 1 2 3 30 30 H 1.08995 * 109.47179 * 180.43136 * 1 2 3 31 31 H 0.97004 * 119.99591 * 25.00883 * 6 4 2 32 32 H 1.09003 * 109.47110 * 300.00569 * 9 7 6 33 33 H 1.09001 * 109.46709 * 60.00879 * 9 7 6 34 34 H 1.09003 * 109.47148 * 299.99871 * 10 9 7 35 35 H 1.08998 * 109.47584 * 60.00140 * 10 9 7 36 36 H 1.08997 * 109.46188 * 294.18174 * 12 11 10 37 37 H 1.08998 * 109.45865 * 54.15076 * 12 11 10 38 38 H 1.08991 * 109.50885 * 299.24163 * 13 12 11 39 39 H 1.09005 * 109.53402 * 179.14120 * 13 12 11 40 40 H 1.08998 * 109.52723 * 182.44161 * 14 13 12 41 41 H 1.09002 * 109.57673 * 62.27373 * 14 13 12 42 42 H 1.09004 * 109.50202 * 297.70922 * 15 14 13 43 43 H 1.08997 * 109.53783 * 177.61352 * 15 14 13 44 44 H 1.08999 * 109.46459 * 305.85546 * 16 11 10 45 45 H 1.09005 * 109.46167 * 65.82528 * 16 11 10 46 46 H 1.08996 * 111.00696 * 153.57258 * 17 4 2 47 47 H 1.08999 * 111.00389 * 277.39503 * 17 4 2 48 48 H 1.09011 * 110.39129 * 204.36485 * 18 17 4 49 49 H 1.08998 * 110.23522 * 82.11849 * 18 17 4 50 50 H 0.97001 * 119.99424 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9006 1.0250 0.0000 4 6 2.0581 -0.7489 -1.2417 5 1 1.3102 -1.4472 -1.6180 6 7 2.4579 0.1970 -2.2865 7 6 2.4632 -0.1879 -3.5780 8 8 2.1365 -1.3173 -3.8755 9 6 2.8751 0.7851 -4.6526 10 6 2.7928 0.1011 -6.0187 11 7 3.1949 1.0494 -7.0662 12 6 2.2382 2.1589 -7.1669 13 6 2.7623 3.1973 -8.1615 14 6 2.9518 2.5364 -9.5296 15 6 3.9147 1.3543 -9.3876 16 6 3.3573 0.3694 -8.3575 17 6 3.2917 -1.5108 -0.6896 18 6 2.8221 -1.8732 0.7391 19 7 2.0300 -0.7126 1.1848 20 6 1.8026 -0.3540 2.4867 21 1 1.3627 0.6060 2.7135 22 6 2.1373 -1.2244 3.5149 23 7 2.5029 -2.4585 3.2396 24 14 2.0691 -0.6442 5.2892 25 1 0.6861 -0.7981 5.8075 26 1 2.9996 -1.4579 6.1122 27 1 2.4675 0.7847 5.3584 28 1 -0.3633 0.5206 0.8861 29 1 -0.3634 0.5071 -0.8938 30 1 -0.3633 -1.0276 0.0077 31 1 2.7191 1.1005 -2.0485 32 1 2.2080 1.6471 -4.6374 33 1 3.8984 1.1143 -4.4719 34 1 3.4596 -0.7610 -6.0342 35 1 1.7694 -0.2278 -6.1993 36 1 1.2764 1.7790 -7.5114 37 1 2.1159 2.6229 -6.1883 38 1 3.7175 3.5877 -7.8106 39 1 2.0452 4.0136 -8.2479 40 1 3.3660 3.2614 -10.2302 41 1 1.9903 2.1804 -9.8995 42 1 4.8881 1.7157 -9.0560 43 1 4.0211 0.8532 -10.3497 44 1 4.0476 -0.4664 -8.2435 45 1 2.3902 -0.0021 -8.6965 46 1 3.4919 -2.4074 -1.2761 47 1 4.1682 -0.8637 -0.6573 48 1 3.6802 -2.0213 1.3949 49 1 2.2021 -2.7694 0.7161 50 1 2.7372 -3.0666 3.9582 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692236708.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:29 Heat of formation + Delta-G solvation = -24.778385 kcal Electronic energy + Delta-G solvation = -25996.483135 eV Core-core repulsion = 22444.384878 eV Total energy + Delta-G solvation = -3552.098257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -39.90800 -39.06968 -37.55919 -34.43987 -33.96901 -32.06400 -31.24535 -30.50695 -30.27165 -28.51911 -25.56499 -24.31419 -23.97814 -23.36196 -22.08226 -20.40523 -20.14149 -19.99902 -19.45002 -17.22711 -16.74761 -15.92930 -15.78905 -15.76521 -15.01595 -14.76673 -14.62025 -14.43745 -13.99114 -13.88213 -13.67951 -13.52349 -13.13184 -12.90664 -12.68188 -12.43092 -12.11609 -11.99348 -11.93905 -11.55106 -11.51622 -11.34084 -11.10969 -10.99709 -10.92422 -10.76525 -10.68126 -10.59432 -10.57006 -10.37841 -10.07713 -9.82825 -9.66870 -9.56507 -8.66351 -8.58369 -8.54996 -6.83487 -5.75272 -3.09136 2.82060 3.22745 3.38939 3.44403 3.46056 3.79028 4.47296 4.48869 4.50030 4.60453 4.76408 4.88773 4.95839 5.03929 5.13222 5.17878 5.29770 5.31578 5.37766 5.42681 5.44098 5.53311 5.57060 5.59825 5.60879 5.62569 5.77122 5.79260 5.83243 5.85318 5.86321 6.05124 6.13511 6.24911 6.32502 6.36318 6.53145 6.63010 6.69944 6.81126 6.83825 6.90611 7.13384 7.49310 7.58902 7.75310 7.77916 8.24480 8.44199 9.17593 9.79665 10.46754 11.37476 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.037803 B = 0.002262 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 740.501325 B =12376.494006 C =12675.175212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.035 0.965 4 C 0.135 3.865 5 H 0.094 0.906 6 N -0.716 5.716 7 C 0.512 3.488 8 O -0.547 6.547 9 C -0.137 4.137 10 C 0.072 3.928 11 N -0.540 5.540 12 C 0.049 3.951 13 C -0.117 4.117 14 C -0.122 4.122 15 C -0.117 4.117 16 C 0.056 3.944 17 C -0.154 4.154 18 C 0.174 3.826 19 N -0.594 5.594 20 C -0.227 4.227 21 H 0.075 0.925 22 C -0.006 4.006 23 N -0.916 5.916 24 Si 0.910 3.090 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.282 1.282 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.051 0.949 31 H 0.398 0.602 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.042 0.958 36 H 0.032 0.968 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.032 0.968 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.070 0.930 49 H 0.029 0.971 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.774 10.202 -23.314 25.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.046 3.954 3 H 0.052 0.948 4 C 0.031 3.969 5 H 0.112 0.888 6 N -0.366 5.366 7 C 0.298 3.702 8 O -0.425 6.425 9 C -0.178 4.178 10 C -0.056 4.056 11 N -0.265 5.265 12 C -0.078 4.078 13 C -0.155 4.155 14 C -0.160 4.160 15 C -0.155 4.155 16 C -0.072 4.072 17 C -0.194 4.194 18 C 0.049 3.951 19 N -0.319 5.319 20 C -0.356 4.356 21 H 0.093 0.907 22 C -0.203 4.203 23 N -0.563 5.563 24 Si 0.741 3.259 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.207 1.207 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.232 0.768 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.051 0.949 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.047 0.953 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 2.023 9.472 -23.170 25.112 hybrid contribution -0.790 0.326 0.954 1.281 sum 1.233 9.798 -22.216 24.312 Atomic orbital electron populations 1.22221 0.97866 1.01427 0.99810 1.21025 0.92566 0.94801 0.86965 0.94769 1.22113 0.97435 0.90909 0.86487 0.88830 1.46082 1.68184 1.16123 1.06231 1.20539 0.77460 0.88652 0.83547 1.90696 1.48342 1.20989 1.82429 1.21637 1.04190 0.98563 0.93378 1.21772 1.00326 0.94335 0.89129 1.61907 1.47959 1.10777 1.05841 1.22172 0.93196 0.92530 0.99944 1.21583 1.01901 0.97303 0.94679 1.21586 0.99510 0.97692 0.97215 1.21588 0.99633 0.96166 0.98070 1.22066 0.99783 0.96492 0.88847 1.23354 0.96898 0.99490 0.99675 1.21349 0.95507 0.89566 0.88676 1.44475 1.57974 1.29367 1.00114 1.18929 1.36678 0.99503 0.80462 0.90686 1.24844 1.02093 0.95371 0.98014 1.69959 1.51243 1.04177 1.30896 0.86173 0.77406 0.77728 0.84630 1.21527 1.21615 1.20741 0.92656 0.94537 0.92939 0.76771 0.89137 0.88113 0.89850 0.93968 0.94933 0.90438 0.91022 0.91649 0.91904 0.92391 0.91038 0.91645 0.90608 0.94926 0.91896 0.92047 0.91189 0.95307 0.93647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.91 9.15 37.16 0.34 -2.57 16 2 C 0.15 3.09 3.48 -66.95 -0.23 2.85 16 3 H 0.03 0.66 7.72 -51.93 -0.40 0.26 16 4 C 0.14 2.45 2.85 -66.10 -0.19 2.26 16 5 H 0.09 1.86 7.27 -51.92 -0.38 1.48 16 6 N -0.72 -10.17 5.18 -52.03 -0.27 -10.44 16 7 C 0.51 7.26 7.83 -10.98 -0.09 7.18 16 8 O -0.55 -9.94 15.63 5.56 0.09 -9.85 16 9 C -0.14 -1.38 5.63 -27.88 -0.16 -1.54 16 10 C 0.07 0.77 4.25 -3.82 -0.02 0.75 16 11 N -0.54 -4.96 4.66 -234.67 -1.09 -6.05 16 12 C 0.05 0.40 5.29 -3.84 -0.02 0.38 16 13 C -0.12 -0.80 6.09 -26.65 -0.16 -0.96 16 14 C -0.12 -0.79 6.00 -26.61 -0.16 -0.95 16 15 C -0.12 -0.80 6.09 -26.65 -0.16 -0.96 16 16 C 0.06 0.46 5.46 -3.84 -0.02 0.44 16 17 C -0.15 -3.02 6.76 -24.70 -0.17 -3.19 16 18 C 0.17 4.22 5.40 -2.65 -0.01 4.21 16 19 N -0.59 -14.75 3.13 -162.71 -0.51 -15.26 16 20 C -0.23 -6.18 9.83 -15.06 -0.15 -6.33 16 21 H 0.08 1.97 7.85 -52.48 -0.41 1.56 16 22 C -0.01 -0.18 5.40 -17.43 -0.09 -0.27 16 23 N -0.92 -26.75 10.71 55.49 0.59 -26.16 16 24 Si 0.91 21.85 29.56 -169.99 -5.03 16.82 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H 0.05 1.08 8.02 -51.93 -0.42 0.67 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.40 4.63 8.37 -40.82 -0.34 4.29 16 32 H 0.09 0.76 6.43 -51.93 -0.33 0.43 16 33 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.08 0.97 7.94 -51.93 -0.41 0.56 16 35 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 36 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.59 6.21 -51.93 -0.32 0.26 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.62 8.01 -51.93 -0.42 0.20 16 45 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.07 1.87 6.99 -51.92 -0.36 1.51 16 49 H 0.03 0.76 8.06 -51.93 -0.42 0.35 16 50 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 384.79 15.07 5.80 5.80 Total: -1.00 -31.20 384.79 -10.97 -42.17 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -9.26 Total: 1.67 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: -1.29 Total: 1.30 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -1.28 Total: -57.91 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.20 -10.97 -42.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692236708.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.388 kcal (2) G-P(sol) polarization free energy of solvation -31.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds