Wall clock time and date at job start Tue Mar 31 2020 09:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46837 * 111.00150 * 2 1 4 4 C 1.53044 * 109.49910 * 185.90572 * 3 2 1 5 5 C 1.53113 * 109.24310 * 300.75223 * 4 3 2 6 6 C 1.53102 * 109.19492 * 57.69859 * 5 4 3 7 7 H 1.09003 * 109.56321 * 62.84516 * 6 5 4 8 8 C 1.53226 * 109.25937 * 182.89037 * 6 5 4 9 9 N 1.46929 * 108.75553 * 174.67175 * 8 6 5 10 10 C 1.34773 * 120.63390 * 126.34731 * 9 8 6 11 11 O 1.21585 * 119.99956 * 5.01187 * 10 9 8 12 12 N 1.34777 * 120.00106 * 184.73815 * 10 9 8 13 13 C 1.46492 * 120.00008 * 175.19726 * 12 10 9 14 14 C 1.53003 * 109.47168 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47230 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47081 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99829 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99952 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00218 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47558 * 89.99566 * 20 18 16 22 22 H 1.48496 * 109.47266 * 210.00061 * 20 18 16 23 23 H 1.48506 * 109.46650 * 329.99685 * 20 18 16 24 24 C 1.46921 * 118.72947 * 306.61569 * 9 8 6 25 25 C 1.52752 * 109.01922 * 53.27665 * 24 9 8 26 26 C 1.46869 * 110.96151 * 124.64905 * 2 1 3 27 27 H 1.09006 * 109.17254 * 294.42072 * 26 2 1 28 28 H 1.09008 * 109.46825 * 63.95801 * 1 2 3 29 29 H 1.08996 * 109.47418 * 183.95566 * 1 2 3 30 30 H 1.08996 * 109.47520 * 303.95978 * 1 2 3 31 31 H 1.08996 * 109.46535 * 65.89531 * 3 2 1 32 32 H 1.08999 * 109.46348 * 305.91302 * 3 2 1 33 33 H 1.09000 * 109.50647 * 180.82666 * 4 3 2 34 34 H 1.08997 * 109.55518 * 60.71027 * 4 3 2 35 35 H 1.09007 * 109.51811 * 297.78168 * 5 4 3 36 36 H 1.08997 * 109.51861 * 177.61958 * 5 4 3 37 37 H 1.08994 * 109.58909 * 54.89147 * 8 6 5 38 38 H 1.08994 * 109.71091 * 294.52033 * 8 6 5 39 39 H 0.96996 * 119.99865 * 355.19588 * 12 10 9 40 40 H 1.08998 * 109.47634 * 299.99963 * 13 12 10 41 41 H 1.09002 * 109.47380 * 59.99636 * 13 12 10 42 42 H 1.08993 * 109.47177 * 299.99879 * 14 13 12 43 43 H 1.08996 * 109.46827 * 60.00036 * 14 13 12 44 44 H 1.08998 * 109.47286 * 300.00557 * 15 14 13 45 45 H 1.08996 * 109.47025 * 60.00355 * 15 14 13 46 46 H 0.97002 * 119.99843 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.58442 * 173.11115 * 24 9 8 48 48 H 1.09005 * 109.59195 * 293.52933 * 24 9 8 49 49 H 1.09000 * 109.56713 * 185.54038 * 25 24 9 50 50 H 1.09005 * 109.36251 * 65.48457 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5180 1.3334 -0.1484 5 6 4.1188 0.5369 1.0130 6 6 3.5186 -0.8716 1.0211 7 1 3.7894 -1.3890 0.1007 8 6 4.0642 -1.6466 2.2250 9 7 3.3863 -2.9482 2.2957 10 6 4.0982 -4.0914 2.3464 11 8 5.3107 -4.0495 2.4260 12 7 3.4657 -5.2811 2.3146 13 6 4.2422 -6.5223 2.2635 14 6 3.2894 -7.7192 2.2360 15 6 4.1003 -9.0155 2.1820 16 6 3.1618 -10.1943 2.1555 17 1 2.0939 -10.0349 2.1749 18 6 3.6667 -11.4764 2.1067 19 7 4.9672 -11.6706 2.0836 20 14 2.5035 -12.9376 2.0732 21 1 2.1772 -13.2786 0.6652 22 1 3.1527 -14.1022 2.7268 23 1 1.2556 -12.5936 2.8011 24 6 1.9174 -2.9799 2.3039 25 6 1.3958 -2.1885 1.1060 26 6 1.9944 -0.7798 1.1283 27 1 1.7250 -0.2852 2.0616 28 1 -0.3633 0.4512 -0.9234 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3634 0.5740 0.8523 31 1 1.7336 1.8603 0.9380 32 1 1.5626 1.9259 -0.8323 33 1 3.9102 2.3503 -0.1337 34 1 3.7809 0.8556 -1.0921 35 1 3.8891 1.0361 1.9544 36 1 5.1997 0.4714 0.8890 37 1 3.8723 -1.0845 3.1389 38 1 5.1371 -1.7992 2.1084 39 1 2.4964 -5.3155 2.3255 40 1 4.8594 -6.5282 1.3651 41 1 4.8815 -6.5875 3.1438 42 1 2.6726 -7.7133 3.1346 43 1 2.6498 -7.6542 1.3558 44 1 4.7169 -9.0212 1.2832 45 1 4.7402 -9.0807 3.0619 46 1 5.3224 -12.5726 2.0489 47 1 1.5739 -4.0121 2.2357 48 1 1.5473 -2.5296 3.2250 49 1 0.3089 -2.1228 1.1572 50 1 1.6872 -2.6931 0.1848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178080340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:38 Heat of formation + Delta-G solvation = -36.921399 kcal Electronic energy + Delta-G solvation = -26161.082457 eV Core-core repulsion = 22608.457640 eV Total energy + Delta-G solvation = -3552.624818 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.81959 -39.33919 -36.38752 -35.37517 -34.48340 -33.30617 -32.12219 -31.00663 -30.38505 -27.03985 -26.92714 -25.34996 -24.22044 -23.02970 -21.93803 -21.48990 -20.58641 -20.13490 -19.34936 -17.99413 -16.53436 -16.11083 -15.99247 -15.70778 -15.61031 -15.08313 -14.82591 -14.52240 -14.34112 -14.19741 -14.10324 -13.79415 -13.26696 -13.18702 -12.97591 -12.74468 -12.31913 -12.20843 -12.13513 -11.78493 -11.71838 -11.67163 -11.54183 -11.27377 -11.02812 -10.89073 -10.74663 -10.64039 -10.57202 -10.36120 -9.98950 -9.83823 -9.41834 -9.10651 -8.92304 -8.67828 -8.45133 -8.35553 -6.00182 -4.03226 2.69392 3.30803 3.31737 3.38046 3.40748 3.51648 3.97843 4.25759 4.36333 4.45742 4.47421 4.61728 4.75289 4.79957 4.89315 5.00854 5.02077 5.09910 5.13804 5.24571 5.29649 5.35511 5.35743 5.38046 5.41769 5.49411 5.58072 5.61477 5.66049 5.74145 5.80225 5.83829 5.85368 5.90732 6.12771 6.21505 6.40022 6.57394 6.65128 6.70569 6.74285 6.83299 7.04876 7.05736 7.65835 7.78960 7.98889 8.09861 8.39781 8.76270 9.03480 9.60784 11.11110 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.026117 B = 0.002307 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.850003 B =12131.807472 C =12832.530577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.541 5.541 3 C 0.058 3.942 4 C -0.116 4.116 5 C -0.115 4.115 6 C -0.094 4.094 7 H 0.085 0.915 8 C 0.137 3.863 9 N -0.633 5.633 10 C 0.705 3.295 11 O -0.591 6.591 12 N -0.742 5.742 13 C 0.134 3.866 14 C -0.120 4.120 15 C 0.024 3.976 16 C -0.522 4.522 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.114 3.886 25 C -0.133 4.133 26 C 0.095 3.905 27 H 0.041 0.959 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.023 0.977 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.392 0.608 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.261 0.739 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.077 29.033 -2.370 30.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.265 5.265 3 C -0.070 4.070 4 C -0.154 4.154 5 C -0.153 4.153 6 C -0.114 4.114 7 H 0.103 0.897 8 C 0.013 3.987 9 N -0.371 5.371 10 C 0.407 3.593 11 O -0.469 6.469 12 N -0.398 5.398 13 C 0.011 3.989 14 C -0.158 4.158 15 C -0.014 4.014 16 C -0.560 4.560 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.010 4.010 25 C -0.171 4.171 26 C -0.013 4.013 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.115 0.885 39 H 0.228 0.772 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.101 0.899 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.873 28.655 -2.747 29.844 hybrid contribution -1.482 -0.476 0.680 1.698 sum -9.355 28.179 -2.067 29.763 Atomic orbital electron populations 1.22458 0.87353 1.02372 1.00696 1.61769 1.07493 1.13376 1.43882 1.22075 0.95749 0.88892 1.00293 1.21573 0.94267 1.00128 0.99462 1.21572 1.00484 0.94651 0.98620 1.21610 0.93840 0.96142 0.99813 0.89698 1.21465 0.98743 0.81820 0.96704 1.47253 1.05707 1.05302 1.78886 1.15902 0.85239 0.80412 0.77786 1.90903 1.11950 1.86107 1.57936 1.45560 1.09924 1.05112 1.79239 1.21515 0.94487 0.81082 1.01838 1.21884 0.98250 0.94912 1.00744 1.19026 0.95195 0.89459 0.97688 1.21201 0.92996 0.91000 1.50796 0.92674 1.25033 0.95056 0.99092 0.95328 1.69971 1.11214 1.21547 1.50530 0.86582 0.80945 0.82267 0.78116 1.20668 1.21220 1.19922 1.21503 0.80330 1.01013 0.98171 1.22042 1.00419 0.95071 0.99605 1.21556 0.94625 0.93544 0.91576 0.94155 0.91407 0.90648 0.95800 0.95063 0.90778 0.91388 0.90920 0.92055 0.91126 0.92121 0.88508 0.77180 0.92031 0.91897 0.92818 0.92826 0.96243 0.96226 0.92938 0.89906 0.91507 0.90319 0.90233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.33 60.06 0.56 0.68 16 2 N -0.54 -4.26 4.73 -234.84 -1.11 -5.37 16 3 C 0.06 0.39 5.47 -3.84 -0.02 0.37 16 4 C -0.12 -0.77 6.10 -26.65 -0.16 -0.94 16 5 C -0.12 -0.83 5.28 -26.62 -0.14 -0.97 16 6 C -0.09 -0.84 2.31 -90.41 -0.21 -1.05 16 7 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 8 C 0.14 1.44 5.69 -3.69 -0.02 1.42 16 9 N -0.63 -7.60 2.98 -178.75 -0.53 -8.13 16 10 C 0.71 11.37 8.30 -86.92 -0.72 10.64 16 11 O -0.59 -11.93 15.78 5.29 0.08 -11.84 16 12 N -0.74 -11.32 5.47 -65.23 -0.36 -11.68 16 13 C 0.13 2.45 5.68 -4.04 -0.02 2.43 16 14 C -0.12 -2.38 5.27 -26.73 -0.14 -2.52 16 15 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 16 C -0.52 -14.63 9.11 -34.44 -0.31 -14.95 16 17 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.11 0.99 6.40 -3.94 -0.03 0.97 16 25 C -0.13 -1.04 5.02 -26.82 -0.13 -1.18 16 26 C 0.10 0.77 1.69 -67.65 -0.11 0.65 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.40 8.14 -51.92 -0.42 -0.03 16 29 H 0.07 0.45 5.71 -51.93 -0.30 0.16 16 30 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 31 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 1.21 7.03 -51.93 -0.37 0.84 16 39 H 0.39 4.88 5.93 -40.82 -0.24 4.64 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 47 H 0.08 0.67 5.57 -51.93 -0.29 0.39 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 49 H 0.08 0.49 6.08 -51.93 -0.32 0.18 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -32.99 380.22 -11.26 -44.24 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -9.08 Total: -0.82 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -1.70 Total: -2.44 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -1.26 Total: -51.41 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.08 Total: -11.84 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.99 -11.26 -44.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178080340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.320 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds