Wall clock time and date at job start Tue Mar 31 2020 09:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46837 * 111.00150 * 2 1 4 4 C 1.53044 * 109.49910 * 185.90572 * 3 2 1 5 5 C 1.53113 * 109.24310 * 300.75223 * 4 3 2 6 6 C 1.53102 * 109.19492 * 57.69859 * 5 4 3 7 7 H 1.09003 * 109.56321 * 62.84516 * 6 5 4 8 8 C 1.53226 * 109.25937 * 182.89037 * 6 5 4 9 9 N 1.46929 * 108.75553 * 174.67175 * 8 6 5 10 10 C 1.34773 * 120.63390 * 126.34731 * 9 8 6 11 11 O 1.21585 * 119.99956 * 5.01187 * 10 9 8 12 12 N 1.34777 * 120.00106 * 184.73815 * 10 9 8 13 13 C 1.46492 * 120.00008 * 175.19726 * 12 10 9 14 14 C 1.53003 * 109.47168 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47230 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47081 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99829 * 0.02562 * 16 15 14 18 18 C 1.37871 * 119.99952 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00052 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 120.00218 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47558 * 89.99566 * 20 18 16 22 22 H 1.48496 * 109.47266 * 210.00061 * 20 18 16 23 23 H 1.48506 * 109.46650 * 329.99685 * 20 18 16 24 24 C 1.46921 * 118.72947 * 306.61569 * 9 8 6 25 25 C 1.52752 * 109.01922 * 53.27665 * 24 9 8 26 26 C 1.46869 * 110.96151 * 124.64905 * 2 1 3 27 27 H 1.09006 * 109.17254 * 294.42072 * 26 2 1 28 28 H 1.09008 * 109.46825 * 63.95801 * 1 2 3 29 29 H 1.08996 * 109.47418 * 183.95566 * 1 2 3 30 30 H 1.08996 * 109.47520 * 303.95978 * 1 2 3 31 31 H 1.08996 * 109.46535 * 65.89531 * 3 2 1 32 32 H 1.08999 * 109.46348 * 305.91302 * 3 2 1 33 33 H 1.09000 * 109.50647 * 180.82666 * 4 3 2 34 34 H 1.08997 * 109.55518 * 60.71027 * 4 3 2 35 35 H 1.09007 * 109.51811 * 297.78168 * 5 4 3 36 36 H 1.08997 * 109.51861 * 177.61958 * 5 4 3 37 37 H 1.08994 * 109.58909 * 54.89147 * 8 6 5 38 38 H 1.08994 * 109.71091 * 294.52033 * 8 6 5 39 39 H 0.96996 * 119.99865 * 355.19588 * 12 10 9 40 40 H 1.08998 * 109.47634 * 299.99963 * 13 12 10 41 41 H 1.09002 * 109.47380 * 59.99636 * 13 12 10 42 42 H 1.08993 * 109.47177 * 299.99879 * 14 13 12 43 43 H 1.08996 * 109.46827 * 60.00036 * 14 13 12 44 44 H 1.08998 * 109.47286 * 300.00557 * 15 14 13 45 45 H 1.08996 * 109.47025 * 60.00355 * 15 14 13 46 46 H 0.97002 * 119.99843 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.58442 * 173.11115 * 24 9 8 48 48 H 1.09005 * 109.59195 * 293.52933 * 24 9 8 49 49 H 1.09000 * 109.56713 * 185.54038 * 25 24 9 50 50 H 1.09005 * 109.36251 * 65.48457 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9952 1.3708 0.0000 4 6 3.5180 1.3334 -0.1484 5 6 4.1188 0.5369 1.0130 6 6 3.5186 -0.8716 1.0211 7 1 3.7894 -1.3890 0.1007 8 6 4.0642 -1.6466 2.2250 9 7 3.3863 -2.9482 2.2957 10 6 4.0982 -4.0914 2.3464 11 8 5.3107 -4.0495 2.4260 12 7 3.4657 -5.2811 2.3146 13 6 4.2422 -6.5223 2.2635 14 6 3.2894 -7.7192 2.2360 15 6 4.1003 -9.0155 2.1820 16 6 3.1618 -10.1943 2.1555 17 1 2.0939 -10.0349 2.1749 18 6 3.6667 -11.4764 2.1067 19 7 4.9672 -11.6706 2.0836 20 14 2.5035 -12.9376 2.0732 21 1 2.1772 -13.2786 0.6652 22 1 3.1527 -14.1022 2.7268 23 1 1.2556 -12.5936 2.8011 24 6 1.9174 -2.9799 2.3039 25 6 1.3958 -2.1885 1.1060 26 6 1.9944 -0.7798 1.1283 27 1 1.7250 -0.2852 2.0616 28 1 -0.3633 0.4512 -0.9234 29 1 -0.3634 -1.0252 0.0709 30 1 -0.3634 0.5740 0.8523 31 1 1.7336 1.8603 0.9380 32 1 1.5626 1.9259 -0.8323 33 1 3.9102 2.3503 -0.1337 34 1 3.7809 0.8556 -1.0921 35 1 3.8891 1.0361 1.9544 36 1 5.1997 0.4714 0.8890 37 1 3.8723 -1.0845 3.1389 38 1 5.1371 -1.7992 2.1084 39 1 2.4964 -5.3155 2.3255 40 1 4.8594 -6.5282 1.3651 41 1 4.8815 -6.5875 3.1438 42 1 2.6726 -7.7133 3.1346 43 1 2.6498 -7.6542 1.3558 44 1 4.7169 -9.0212 1.2832 45 1 4.7402 -9.0807 3.0619 46 1 5.3224 -12.5726 2.0489 47 1 1.5739 -4.0121 2.2357 48 1 1.5473 -2.5296 3.2250 49 1 0.3089 -2.1228 1.1572 50 1 1.6872 -2.6931 0.1848 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178080340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:50:37 Heat of formation + Delta-G solvation = -58.515374 kcal Electronic energy + Delta-G solvation = -26162.018842 eV Core-core repulsion = 22608.457640 eV Total energy + Delta-G solvation = -3553.561203 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.74528 -40.29596 -37.38516 -36.85991 -35.35807 -34.95496 -33.34140 -32.39897 -31.17983 -28.65045 -27.54848 -26.46434 -24.92158 -24.71064 -22.67856 -22.34165 -22.27290 -20.76781 -20.49979 -19.11075 -18.46203 -17.39238 -16.95208 -16.57358 -16.49452 -16.29101 -15.93898 -15.82468 -15.46028 -15.12908 -14.96971 -14.86623 -14.28800 -14.12730 -13.97306 -13.73205 -13.65368 -13.42644 -13.29058 -12.90330 -12.75417 -12.73369 -12.52923 -12.37211 -12.35160 -12.22847 -11.91974 -11.67172 -11.65588 -11.59934 -11.40728 -11.24384 -11.08046 -10.95167 -10.54500 -10.24704 -9.51710 -9.21880 -8.18400 -6.29974 1.42351 1.44020 1.54654 1.59233 2.08595 2.42675 2.90171 2.92367 3.15309 3.61213 3.67572 3.81969 4.03010 4.10844 4.15387 4.16950 4.23070 4.26682 4.33420 4.42167 4.53066 4.55780 4.59173 4.63950 4.66882 4.74233 4.77030 4.79178 4.83278 4.94602 4.95959 5.00494 5.03427 5.10976 5.16835 5.17656 5.24367 5.28722 5.45098 5.46841 5.52321 5.55756 5.71689 5.84971 5.90024 6.17534 6.19512 6.23304 6.86901 6.94445 7.39509 7.51882 8.93812 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.026117 B = 0.002307 C = 0.002181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.850003 B =12131.807472 C =12832.530577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.556 5.556 3 C 0.057 3.943 4 C -0.114 4.114 5 C -0.113 4.113 6 C -0.086 4.086 7 H 0.058 0.942 8 C 0.135 3.865 9 N -0.626 5.626 10 C 0.699 3.301 11 O -0.639 6.639 12 N -0.731 5.731 13 C 0.149 3.851 14 C -0.099 4.099 15 C 0.024 3.976 16 C -0.539 4.539 17 H 0.067 0.933 18 C -0.005 4.005 19 N -0.936 5.936 20 Si 0.968 3.032 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.259 1.259 24 C 0.109 3.891 25 C -0.126 4.126 26 C 0.099 3.901 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.409 0.591 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.068 0.932 43 H 0.068 0.932 44 H -0.008 1.008 45 H -0.008 1.008 46 H 0.263 0.737 47 H 0.090 0.910 48 H 0.090 0.910 49 H 0.102 0.898 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.212 30.283 -2.079 32.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.281 5.281 3 C -0.070 4.070 4 C -0.152 4.152 5 C -0.151 4.151 6 C -0.106 4.106 7 H 0.077 0.923 8 C 0.012 3.988 9 N -0.363 5.363 10 C 0.401 3.599 11 O -0.521 6.521 12 N -0.389 5.389 13 C 0.024 3.976 14 C -0.137 4.137 15 C -0.014 4.014 16 C -0.577 4.577 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.576 5.576 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.183 1.183 24 C -0.014 4.014 25 C -0.165 4.165 26 C -0.010 4.010 27 H 0.066 0.934 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.100 0.900 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.248 0.752 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.010 0.990 45 H 0.010 0.990 46 H 0.072 0.928 47 H 0.108 0.892 48 H 0.108 0.892 49 H 0.120 0.880 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.082 29.956 -2.462 32.035 hybrid contribution -0.483 -0.787 0.571 1.086 sum -11.565 29.169 -1.891 31.434 Atomic orbital electron populations 1.22487 0.86319 1.02779 1.01243 1.61758 1.08530 1.13997 1.43817 1.22110 0.95518 0.88491 1.00890 1.21560 0.94533 1.00711 0.98367 1.21565 1.00261 0.93717 0.99560 1.21493 0.95026 0.96535 0.97591 0.92323 1.21564 0.97408 0.81448 0.98393 1.47326 1.07218 1.04391 1.77340 1.16087 0.84826 0.81372 0.77639 1.90869 1.14251 1.86901 1.60056 1.45216 1.10510 1.03978 1.79187 1.21085 0.94065 0.82068 1.00341 1.21580 0.97663 0.92378 1.02090 1.18939 0.95055 0.92338 0.95065 1.21672 0.93875 0.91888 1.50311 0.91439 1.26045 0.96765 1.02606 0.94826 1.70122 1.13447 1.22364 1.51667 0.85398 0.78878 0.77958 0.78503 1.19818 1.21102 1.18341 1.21793 0.77873 1.02018 0.99693 1.21994 1.01723 0.94565 0.98189 1.21490 0.93537 0.93824 0.92104 0.93382 0.90997 0.90308 0.95109 0.94473 0.90050 0.89774 0.92265 0.90884 0.91485 0.90166 0.91072 0.75224 0.93661 0.93562 0.91319 0.91355 0.98994 0.98965 0.92835 0.89171 0.89203 0.88001 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.33 127.69 1.19 1.39 16 2 N -0.56 -7.64 4.73 -896.90 -4.24 -11.89 16 3 C 0.06 0.66 5.47 86.33 0.47 1.13 16 4 C -0.11 -1.35 6.10 30.65 0.19 -1.17 16 5 C -0.11 -1.52 5.28 30.67 0.16 -1.36 16 6 C -0.09 -1.49 2.31 -10.66 -0.02 -1.51 16 7 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 8 C 0.14 2.80 5.69 86.37 0.49 3.29 16 9 N -0.63 -14.51 2.98 -837.71 -2.49 -17.00 16 10 C 0.70 22.66 8.30 179.06 1.49 24.15 16 11 O -0.64 -26.77 15.78 -3.99 -0.06 -26.83 16 12 N -0.73 -21.92 5.47 -478.55 -2.62 -24.54 16 13 C 0.15 5.55 5.68 86.38 0.49 6.04 16 14 C -0.10 -3.89 5.27 30.60 0.16 -3.73 16 15 C 0.02 1.25 4.97 29.85 0.15 1.40 16 16 C -0.54 -30.24 9.11 25.60 0.23 -30.01 16 17 H 0.07 3.53 7.74 -2.91 -0.02 3.51 16 18 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 19 N -0.94 -57.64 13.29 21.45 0.28 -57.35 16 20 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 21 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 23 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 24 C 0.11 1.63 6.40 86.22 0.55 2.18 16 25 C -0.13 -1.70 5.02 30.54 0.15 -1.55 16 26 C 0.10 1.39 1.69 44.97 0.08 1.47 16 27 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.08 0.73 5.71 -2.39 -0.01 0.71 16 30 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.04 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.82 8.12 -2.39 -0.02 0.80 16 33 H 0.08 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.07 1.86 7.03 -2.39 -0.02 1.84 16 39 H 0.41 9.40 5.93 -92.71 -0.55 8.85 16 40 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 43 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 44 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 45 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 46 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 47 H 0.09 1.22 5.57 -2.39 -0.01 1.20 16 48 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.10 0.94 6.08 -2.39 -0.01 0.92 16 50 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 Total: -1.00 -73.09 380.22 -0.52 -73.61 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.35 Total: 16.14 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 6.24 Total: 1.91 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -9.07 Total: -110.78 kcal Atomic # 8 Polarization: -26.77 SS G_CDS: -0.06 Total: -26.83 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -73.09 -0.52 -73.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178080340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.094 kcal (2) G-P(sol) polarization free energy of solvation -73.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds