Wall clock time and date at job start Tue Mar 31 2020 09:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34777 * 120.00169 * 2 1 4 4 O 1.21588 * 119.99963 * 179.97438 * 3 2 1 5 5 N 1.34775 * 120.00034 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00088 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47051 * 180.02562 * 6 5 3 8 8 C 1.53040 * 109.46028 * 295.02587 * 7 6 5 9 9 C 1.53193 * 109.31841 * 178.60252 * 8 7 6 10 10 N 1.46925 * 108.76186 * 54.65168 * 9 8 7 11 11 C 1.36937 * 120.63026 * 126.41073 * 10 9 8 12 12 H 1.08009 * 119.99706 * 331.82625 * 11 10 9 13 13 C 1.38814 * 120.00496 * 151.82623 * 11 10 9 14 14 N 1.31615 * 119.99630 * 343.07208 * 13 11 10 15 15 Si 1.86793 * 119.99954 * 163.06722 * 13 11 10 16 16 H 1.48498 * 109.47629 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47075 * 120.00557 * 15 13 11 18 18 H 1.48507 * 109.47194 * 239.99873 * 15 13 11 19 19 C 1.46928 * 118.74141 * 306.38738 * 10 9 8 20 20 C 1.53042 * 109.46056 * 174.97102 * 7 6 5 21 21 C 1.46500 * 120.00053 * 179.97438 * 2 1 3 22 22 C 1.54964 * 110.92506 * 306.54468 * 21 2 1 23 23 C 1.54265 * 104.16214 * 156.29263 * 22 21 2 24 24 C 1.53871 * 106.64326 * 336.44587 * 23 22 21 25 25 C 1.54271 * 106.59614 * 359.97433 * 24 23 22 26 26 H 1.08997 * 109.47922 * 270.00191 * 1 2 3 27 27 H 1.09004 * 109.46949 * 30.00618 * 1 2 3 28 28 H 1.09002 * 109.47185 * 149.99694 * 1 2 3 29 29 H 0.97001 * 120.00176 * 0.02562 * 5 3 2 30 30 H 1.09002 * 109.46722 * 300.00016 * 6 5 3 31 31 H 1.08993 * 109.47420 * 59.99907 * 6 5 3 32 32 H 1.08995 * 109.46184 * 54.99782 * 7 6 5 33 33 H 1.08999 * 109.49735 * 298.57041 * 8 7 6 34 34 H 1.09004 * 109.49618 * 58.66269 * 8 7 6 35 35 H 1.09001 * 109.59673 * 294.87258 * 9 8 7 36 36 H 1.08991 * 109.70858 * 174.50769 * 9 8 7 37 37 H 0.96997 * 120.00016 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.58673 * 293.81776 * 19 10 9 39 39 H 1.08999 * 109.70415 * 173.46671 * 19 10 9 40 40 H 1.08993 * 109.50075 * 301.33324 * 20 7 6 41 41 H 1.09007 * 109.49359 * 61.43530 * 20 7 6 42 42 H 1.09003 * 110.67241 * 183.23530 * 21 2 1 43 43 H 1.08994 * 110.47793 * 37.63878 * 22 21 2 44 44 H 1.09000 * 110.52808 * 274.97342 * 22 21 2 45 45 H 1.08997 * 110.02994 * 217.13390 * 23 22 21 46 46 H 1.09003 * 110.03043 * 95.75621 * 23 22 21 47 47 H 1.09003 * 110.03639 * 119.25426 * 24 23 22 48 48 H 1.08991 * 110.03356 * 240.64579 * 24 23 22 49 49 H 1.09004 * 110.48490 * 142.28631 * 25 24 23 50 50 H 1.09003 * 110.48853 * 264.93486 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1671 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6031 -0.0011 7 6 1.2033 4.7660 -0.0010 8 6 0.4075 4.7566 -1.3082 9 6 -0.6108 5.9009 -1.2898 10 7 0.0981 7.1601 -1.0242 11 6 -0.0460 8.2324 -1.8637 12 1 -0.2742 8.0741 -2.9075 13 6 0.1013 9.5226 -1.3734 14 7 0.0460 9.7442 -0.0772 15 14 0.3781 10.9442 -2.5531 16 1 0.3991 10.4336 -3.9474 17 1 -0.7210 11.9318 -2.4046 18 1 1.6756 11.5976 -2.2451 19 6 0.9641 7.2473 0.1595 20 6 1.9646 6.0877 0.1249 21 6 2.1974 -1.2687 0.0006 22 6 1.7277 -2.1784 1.1638 23 6 2.0868 -3.6041 0.6966 24 6 2.1616 -3.5587 -0.8396 25 6 1.8447 -2.1068 -1.2534 26 1 -0.3635 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 0.4950 2.3345 -0.0005 30 1 2.8242 3.6612 0.8889 31 1 2.8242 3.6605 -0.8910 32 1 0.5196 4.6592 0.8411 33 1 1.0880 4.8884 -2.1493 34 1 -0.1159 3.8057 -1.4086 35 1 -1.3463 5.7233 -0.5052 36 1 -1.1135 5.9611 -2.2550 37 1 0.1492 10.6457 0.2655 38 1 0.3571 7.1794 1.0622 39 1 1.5027 8.1949 0.1518 40 1 2.5496 6.0844 1.0446 41 1 2.6303 6.2068 -0.7300 42 1 3.2716 -1.0928 0.0580 43 1 0.6518 -2.0848 1.3106 44 1 2.2618 -1.9319 2.0815 45 1 1.3148 -4.3059 1.0123 46 1 3.0514 -3.9003 1.1089 47 1 3.1628 -3.8319 -1.1730 48 1 1.4266 -4.2391 -1.2694 49 1 2.4641 -1.8073 -2.0990 50 1 0.7876 -2.0016 -1.4975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337764753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:57 Heat of formation + Delta-G solvation = -22.439862 kcal Electronic energy + Delta-G solvation = -26264.330333 eV Core-core repulsion = 22712.333482 eV Total energy + Delta-G solvation = -3551.996851 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.45413 -38.45310 -37.61897 -34.95395 -34.76053 -32.71704 -30.76133 -29.72653 -29.04063 -28.43960 -27.18623 -26.18391 -23.92595 -22.26070 -21.40306 -20.85165 -20.62070 -19.58400 -19.08361 -18.29667 -16.84885 -16.65247 -15.87456 -15.66281 -15.12127 -14.84784 -14.27186 -14.22605 -13.85875 -13.75480 -13.51253 -13.49562 -13.26520 -13.02364 -12.62434 -12.57112 -12.26581 -12.21187 -11.89480 -11.64934 -11.58547 -11.45260 -11.31843 -10.98365 -10.89225 -10.75470 -10.72922 -10.47952 -10.23198 -10.18824 -10.11485 -9.89348 -9.53952 -9.43361 -9.05625 -8.59494 -8.46446 -6.66050 -5.78312 -3.20688 2.57077 3.19418 3.37560 3.45629 3.47782 3.89503 4.31390 4.33179 4.50375 4.53205 4.79580 5.02630 5.07968 5.08856 5.15208 5.17103 5.24380 5.26655 5.34555 5.38248 5.40838 5.43912 5.53581 5.59347 5.62247 5.72086 5.86450 5.88695 5.90844 5.99382 6.00926 6.07477 6.16157 6.33439 6.36849 6.45718 6.55257 6.62170 6.72129 6.78233 6.82448 6.89738 6.99465 7.38650 7.67224 7.80623 7.92867 8.46159 8.60023 9.22383 9.85925 10.42663 11.30200 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.039660 B = 0.002333 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.835682 B =11996.649631 C =12133.441541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.628 5.628 3 C 0.704 3.296 4 O -0.594 6.594 5 N -0.739 5.739 6 C 0.141 3.859 7 C -0.089 4.089 8 C -0.126 4.126 9 C 0.145 3.855 10 N -0.593 5.593 11 C -0.251 4.251 12 H 0.065 0.935 13 C 0.001 3.999 14 N -0.903 5.903 15 Si 0.901 3.099 16 H -0.278 1.278 17 H -0.291 1.291 18 H -0.289 1.289 19 C 0.172 3.828 20 C -0.132 4.132 21 C 0.153 3.847 22 C -0.135 4.135 23 C -0.122 4.122 24 C -0.122 4.122 25 C -0.137 4.137 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.396 0.604 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.015 0.985 36 H 0.052 0.948 37 H 0.253 0.747 38 H 0.017 0.983 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.058 0.942 42 H 0.108 0.892 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.069 0.931 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.633 -25.110 1.736 25.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.365 5.365 3 C 0.406 3.594 4 O -0.472 6.472 5 N -0.395 5.395 6 C 0.017 3.983 7 C -0.109 4.109 8 C -0.165 4.165 9 C 0.019 3.981 10 N -0.315 5.315 11 C -0.380 4.380 12 H 0.083 0.917 13 C -0.197 4.197 14 N -0.548 5.548 15 Si 0.731 3.269 16 H -0.203 1.203 17 H -0.218 1.218 18 H -0.215 1.215 19 C 0.046 3.954 20 C -0.172 4.172 21 C 0.049 3.951 22 C -0.174 4.174 23 C -0.160 4.160 24 C -0.160 4.160 25 C -0.176 4.176 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.232 0.768 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.033 0.967 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.035 0.965 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.126 0.874 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.088 0.912 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.530 -24.895 1.806 25.007 hybrid contribution -0.486 0.758 -0.505 1.032 sum 1.044 -24.137 1.301 24.194 Atomic orbital electron populations 1.21694 0.80217 1.03057 1.01729 1.46944 1.06120 1.04770 1.78632 1.15909 0.85328 0.80420 0.77788 1.90897 1.11643 1.86258 1.58400 1.45401 1.09943 1.04871 1.79320 1.21441 0.94424 0.80621 1.01790 1.21309 0.96742 0.94111 0.98693 1.22060 0.99174 0.98374 0.96883 1.20887 0.92275 0.86554 0.98386 1.44058 1.49843 1.09262 1.28375 1.19222 1.44064 0.84505 0.90243 0.91734 1.25047 1.01423 0.97538 0.95742 1.70036 1.53312 1.20159 1.11258 0.86239 0.77541 0.82526 0.80567 1.20277 1.21773 1.21541 1.20760 0.90421 0.95911 0.88315 1.22174 0.99262 0.95313 1.00468 1.21961 0.97891 0.81159 0.94121 1.22717 1.01632 0.94586 0.98431 1.22063 1.01772 0.96550 0.95654 1.22062 1.01883 0.96368 0.95723 1.22738 1.01926 0.94741 0.98158 0.92644 0.91320 0.90695 0.76838 0.92018 0.91837 0.91411 0.92159 0.93693 0.96674 0.92926 0.93702 0.96473 0.89413 0.93028 0.92360 0.87417 0.91170 0.91257 0.91650 0.91586 0.91573 0.91653 0.91212 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.56 8.87 59.84 0.53 1.10 16 2 N -0.63 -6.76 2.89 -177.34 -0.51 -7.27 16 3 C 0.70 10.13 8.28 -86.92 -0.72 9.41 16 4 O -0.59 -10.86 15.71 5.29 0.08 -10.78 16 5 N -0.74 -9.67 5.14 -65.23 -0.34 -10.00 16 6 C 0.14 2.09 5.06 -4.04 -0.02 2.07 16 7 C -0.09 -1.43 2.19 -90.58 -0.20 -1.62 16 8 C -0.13 -2.07 5.25 -26.61 -0.14 -2.21 16 9 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 10 N -0.59 -14.66 2.99 -172.32 -0.52 -15.18 16 11 C -0.25 -6.85 9.58 -15.06 -0.14 -7.00 16 12 H 0.06 1.74 7.89 -52.48 -0.41 1.33 16 13 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 14 N -0.90 -26.15 11.19 55.49 0.62 -25.53 16 15 Si 0.90 21.70 29.59 -169.99 -5.03 16.68 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 C 0.17 4.03 5.30 -3.71 -0.02 4.01 16 20 C -0.13 -2.47 5.36 -26.61 -0.14 -2.61 16 21 C 0.15 1.49 3.30 -65.89 -0.22 1.27 16 22 C -0.13 -1.03 6.38 -25.03 -0.16 -1.19 16 23 C -0.12 -0.76 6.80 -25.62 -0.17 -0.94 16 24 C -0.12 -0.78 6.80 -25.61 -0.17 -0.95 16 25 C -0.14 -1.08 6.39 -25.07 -0.16 -1.24 16 26 H 0.05 0.36 8.10 -51.93 -0.42 -0.06 16 27 H 0.07 0.48 6.36 -51.93 -0.33 0.15 16 28 H 0.07 0.44 6.37 -51.93 -0.33 0.11 16 29 H 0.40 4.32 5.38 -40.82 -0.22 4.10 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.04 0.61 7.15 -51.93 -0.37 0.24 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.09 2.33 6.07 -51.93 -0.31 2.01 16 40 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.11 1.31 7.00 -51.93 -0.36 0.95 16 43 H 0.07 0.49 7.08 -51.93 -0.37 0.12 16 44 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 49 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 50 H 0.07 0.50 6.36 -51.93 -0.33 0.17 16 LS Contribution 377.81 15.07 5.69 5.69 Total: -1.00 -31.90 377.81 -10.77 -42.68 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -8.93 Total: 0.75 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.85 Total: 2.97 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: -0.74 Total: -57.98 kcal Atomic # 8 Polarization: -10.86 SS G_CDS: 0.08 Total: -10.78 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -31.90 -10.77 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337764753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.235 kcal (2) G-P(sol) polarization free energy of solvation -31.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds