Wall clock time and date at job start Tue Mar 31 2020 09:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34777 * 120.00169 * 2 1 4 4 O 1.21588 * 119.99963 * 179.97438 * 3 2 1 5 5 N 1.34775 * 120.00034 * 359.97438 * 3 2 1 6 6 C 1.46499 * 120.00088 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47051 * 180.02562 * 6 5 3 8 8 C 1.53040 * 109.46028 * 295.02587 * 7 6 5 9 9 C 1.53193 * 109.31841 * 178.60252 * 8 7 6 10 10 N 1.46925 * 108.76186 * 54.65168 * 9 8 7 11 11 C 1.36937 * 120.63026 * 126.41073 * 10 9 8 12 12 H 1.08009 * 119.99706 * 331.82625 * 11 10 9 13 13 C 1.38814 * 120.00496 * 151.82623 * 11 10 9 14 14 N 1.31615 * 119.99630 * 343.07208 * 13 11 10 15 15 Si 1.86793 * 119.99954 * 163.06722 * 13 11 10 16 16 H 1.48498 * 109.47629 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47075 * 120.00557 * 15 13 11 18 18 H 1.48507 * 109.47194 * 239.99873 * 15 13 11 19 19 C 1.46928 * 118.74141 * 306.38738 * 10 9 8 20 20 C 1.53042 * 109.46056 * 174.97102 * 7 6 5 21 21 C 1.46500 * 120.00053 * 179.97438 * 2 1 3 22 22 C 1.54964 * 110.92506 * 306.54468 * 21 2 1 23 23 C 1.54265 * 104.16214 * 156.29263 * 22 21 2 24 24 C 1.53871 * 106.64326 * 336.44587 * 23 22 21 25 25 C 1.54271 * 106.59614 * 359.97433 * 24 23 22 26 26 H 1.08997 * 109.47922 * 270.00191 * 1 2 3 27 27 H 1.09004 * 109.46949 * 30.00618 * 1 2 3 28 28 H 1.09002 * 109.47185 * 149.99694 * 1 2 3 29 29 H 0.97001 * 120.00176 * 0.02562 * 5 3 2 30 30 H 1.09002 * 109.46722 * 300.00016 * 6 5 3 31 31 H 1.08993 * 109.47420 * 59.99907 * 6 5 3 32 32 H 1.08995 * 109.46184 * 54.99782 * 7 6 5 33 33 H 1.08999 * 109.49735 * 298.57041 * 8 7 6 34 34 H 1.09004 * 109.49618 * 58.66269 * 8 7 6 35 35 H 1.09001 * 109.59673 * 294.87258 * 9 8 7 36 36 H 1.08991 * 109.70858 * 174.50769 * 9 8 7 37 37 H 0.96997 * 120.00016 * 179.97438 * 14 13 11 38 38 H 1.08996 * 109.58673 * 293.81776 * 19 10 9 39 39 H 1.08999 * 109.70415 * 173.46671 * 19 10 9 40 40 H 1.08993 * 109.50075 * 301.33324 * 20 7 6 41 41 H 1.09007 * 109.49359 * 61.43530 * 20 7 6 42 42 H 1.09003 * 110.67241 * 183.23530 * 21 2 1 43 43 H 1.08994 * 110.47793 * 37.63878 * 22 21 2 44 44 H 1.09000 * 110.52808 * 274.97342 * 22 21 2 45 45 H 1.08997 * 110.02994 * 217.13390 * 23 22 21 46 46 H 1.09003 * 110.03043 * 95.75621 * 23 22 21 47 47 H 1.09003 * 110.03639 * 119.25426 * 24 23 22 48 48 H 1.08991 * 110.03356 * 240.64579 * 24 23 22 49 49 H 1.09004 * 110.48490 * 142.28631 * 25 24 23 50 50 H 1.09003 * 110.48853 * 264.93486 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3547 1.1671 0.0005 5 7 1.4650 2.3344 -0.0005 6 6 2.1975 3.6031 -0.0011 7 6 1.2033 4.7660 -0.0010 8 6 0.4075 4.7566 -1.3082 9 6 -0.6108 5.9009 -1.2898 10 7 0.0981 7.1601 -1.0242 11 6 -0.0460 8.2324 -1.8637 12 1 -0.2742 8.0741 -2.9075 13 6 0.1013 9.5226 -1.3734 14 7 0.0460 9.7442 -0.0772 15 14 0.3781 10.9442 -2.5531 16 1 0.3991 10.4336 -3.9474 17 1 -0.7210 11.9318 -2.4046 18 1 1.6756 11.5976 -2.2451 19 6 0.9641 7.2473 0.1595 20 6 1.9646 6.0877 0.1249 21 6 2.1974 -1.2687 0.0006 22 6 1.7277 -2.1784 1.1638 23 6 2.0868 -3.6041 0.6966 24 6 2.1616 -3.5587 -0.8396 25 6 1.8447 -2.1068 -1.2534 26 1 -0.3635 0.0000 1.0276 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5139 29 1 0.4950 2.3345 -0.0005 30 1 2.8242 3.6612 0.8889 31 1 2.8242 3.6605 -0.8910 32 1 0.5196 4.6592 0.8411 33 1 1.0880 4.8884 -2.1493 34 1 -0.1159 3.8057 -1.4086 35 1 -1.3463 5.7233 -0.5052 36 1 -1.1135 5.9611 -2.2550 37 1 0.1492 10.6457 0.2655 38 1 0.3571 7.1794 1.0622 39 1 1.5027 8.1949 0.1518 40 1 2.5496 6.0844 1.0446 41 1 2.6303 6.2068 -0.7300 42 1 3.2716 -1.0928 0.0580 43 1 0.6518 -2.0848 1.3106 44 1 2.2618 -1.9319 2.0815 45 1 1.3148 -4.3059 1.0123 46 1 3.0514 -3.9003 1.1089 47 1 3.1628 -3.8319 -1.1730 48 1 1.4266 -4.2391 -1.2694 49 1 2.4641 -1.8073 -2.0990 50 1 0.7876 -2.0016 -1.4975 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337764753.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:57 Heat of formation + Delta-G solvation = -40.872256 kcal Electronic energy + Delta-G solvation = -26265.129622 eV Core-core repulsion = 22712.333482 eV Total energy + Delta-G solvation = -3552.796140 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.44583 -39.62574 -38.78018 -36.39024 -35.70032 -34.32203 -32.46573 -31.39549 -29.61405 -29.25264 -28.32729 -27.31927 -25.60211 -23.83727 -22.81702 -21.97263 -21.14523 -20.83288 -20.27996 -19.30386 -18.62213 -17.68101 -16.87479 -16.73874 -16.46068 -16.01659 -15.75468 -15.38542 -15.29981 -15.08907 -14.81204 -14.40115 -14.24221 -14.10033 -14.00415 -13.87066 -13.39058 -13.15870 -13.11918 -13.00505 -12.80071 -12.58809 -12.35231 -12.23073 -12.11779 -11.99801 -11.98699 -11.83939 -11.63274 -11.55054 -11.34078 -11.24408 -11.13395 -11.08069 -10.53666 -10.19478 -9.44962 -8.66164 -7.86812 -5.31634 1.45347 1.47823 1.57814 1.63976 2.11141 2.51536 2.98076 3.27746 3.70271 3.71790 3.72270 3.84833 3.95260 3.96006 4.08195 4.22723 4.43111 4.49598 4.52791 4.53904 4.54749 4.56300 4.67430 4.70679 4.73966 4.80472 4.81451 4.84255 4.94338 4.95625 5.02266 5.10208 5.13155 5.19856 5.26351 5.29409 5.30367 5.30724 5.40382 5.49459 5.49854 5.55347 5.59776 5.66977 5.80062 5.98250 6.40820 6.95851 7.16491 7.54319 7.88858 8.39537 9.19462 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.039660 B = 0.002333 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.835682 B =11996.649631 C =12133.441541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.622 5.622 3 C 0.697 3.303 4 O -0.640 6.640 5 N -0.729 5.729 6 C 0.155 3.845 7 C -0.076 4.076 8 C -0.112 4.112 9 C 0.140 3.860 10 N -0.612 5.612 11 C -0.259 4.259 12 H 0.065 0.935 13 C -0.052 4.052 14 N -0.935 5.935 15 Si 0.964 3.036 16 H -0.268 1.268 17 H -0.292 1.292 18 H -0.291 1.291 19 C 0.178 3.822 20 C -0.122 4.122 21 C 0.144 3.856 22 C -0.128 4.128 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.131 4.131 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.409 0.591 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.077 0.923 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.019 0.981 36 H 0.052 0.948 37 H 0.249 0.751 38 H -0.001 1.001 39 H 0.051 0.949 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.058 0.942 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.081 0.919 49 H 0.055 0.945 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.620 -27.542 1.233 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.358 5.358 3 C 0.398 3.602 4 O -0.523 6.523 5 N -0.387 5.387 6 C 0.031 3.969 7 C -0.095 4.095 8 C -0.151 4.151 9 C 0.015 3.985 10 N -0.336 5.336 11 C -0.390 4.390 12 H 0.082 0.918 13 C -0.248 4.248 14 N -0.581 5.581 15 Si 0.793 3.207 16 H -0.192 1.192 17 H -0.219 1.219 18 H -0.218 1.218 19 C 0.052 3.948 20 C -0.162 4.162 21 C 0.040 3.960 22 C -0.167 4.167 23 C -0.157 4.157 24 C -0.157 4.157 25 C -0.170 4.170 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.114 0.886 29 H 0.247 0.753 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.101 0.899 35 H 0.037 0.963 36 H 0.070 0.930 37 H 0.058 0.942 38 H 0.017 0.983 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.100 0.900 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.100 0.900 49 H 0.074 0.926 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 0.223 -27.385 1.290 27.417 hybrid contribution -0.140 1.460 -0.339 1.505 sum 0.083 -25.925 0.951 25.943 Atomic orbital electron populations 1.21972 0.77749 1.04520 1.03093 1.47027 1.07617 1.03842 1.77279 1.16123 0.84896 0.81433 0.77706 1.90866 1.13864 1.87026 1.60500 1.45165 1.10430 1.03958 1.79119 1.21104 0.93844 0.80917 1.01057 1.21133 0.96626 0.92906 0.98843 1.21908 0.98164 0.98444 0.96601 1.21071 0.93140 0.85893 0.98370 1.44343 1.50886 1.10177 1.28215 1.19529 1.43127 0.85593 0.90737 0.91770 1.25778 1.01963 0.99881 0.97152 1.70178 1.54782 1.20278 1.12855 0.85254 0.76913 0.79452 0.79115 1.19192 1.21879 1.21788 1.20558 0.90651 0.96188 0.87393 1.21978 0.98176 0.94978 1.01040 1.22050 0.96305 0.81310 0.96344 1.22675 1.02205 0.94811 0.97003 1.22062 1.02329 0.95855 0.95462 1.22059 1.02329 0.95484 0.95841 1.22699 1.02379 0.95290 0.96639 0.91289 0.90574 0.88595 0.75289 0.92461 0.93073 0.90462 0.93251 0.89905 0.96265 0.92972 0.94157 0.98250 0.93086 0.91320 0.93184 0.90675 0.89776 0.92310 0.89988 0.91710 0.91788 0.90034 0.92632 0.89817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.78 8.87 127.77 1.13 1.91 16 2 N -0.62 -12.30 2.89 -833.23 -2.41 -14.71 16 3 C 0.70 19.32 8.28 179.05 1.48 20.81 16 4 O -0.64 -23.68 15.71 -3.99 -0.06 -23.74 16 5 N -0.73 -17.55 5.14 -478.55 -2.46 -20.01 16 6 C 0.16 4.38 5.06 86.38 0.44 4.81 16 7 C -0.08 -2.29 2.19 -10.77 -0.02 -2.31 16 8 C -0.11 -3.44 5.25 30.67 0.16 -3.28 16 9 C 0.14 5.53 6.52 86.36 0.56 6.09 16 10 N -0.61 -30.46 2.99 -699.10 -2.09 -32.56 16 11 C -0.26 -14.31 9.58 84.03 0.81 -13.51 16 12 H 0.06 3.47 7.89 -2.91 -0.02 3.45 16 13 C -0.05 -2.95 4.92 84.86 0.42 -2.53 16 14 N -0.93 -55.53 11.19 21.65 0.24 -55.29 16 15 Si 0.96 45.24 29.59 68.60 2.03 47.27 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 18 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 19 C 0.18 8.51 5.30 86.36 0.46 8.97 16 20 C -0.12 -4.51 5.36 30.67 0.16 -4.34 16 21 C 0.14 2.67 3.30 46.31 0.15 2.82 16 22 C -0.13 -1.72 6.38 31.69 0.20 -1.51 16 23 C -0.12 -1.21 6.80 31.32 0.21 -1.00 16 24 C -0.12 -1.24 6.80 31.32 0.21 -1.03 16 25 C -0.13 -1.84 6.39 31.67 0.20 -1.64 16 26 H 0.07 0.64 8.10 -2.39 -0.02 0.63 16 27 H 0.08 0.77 6.36 -2.39 -0.02 0.75 16 28 H 0.10 0.72 6.37 -2.39 -0.02 0.70 16 29 H 0.41 7.57 5.38 -92.71 -0.50 7.07 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.58 16 32 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.94 7.15 -2.38 -0.02 1.93 16 35 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 37 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.05 2.80 6.07 -2.39 -0.01 2.79 16 40 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.05 1.92 8.14 -2.38 -0.02 1.91 16 42 H 0.08 1.89 7.00 -2.39 -0.02 1.88 16 43 H 0.08 0.90 7.08 -2.39 -0.02 0.88 16 44 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 50 H 0.08 0.94 6.36 -2.39 -0.02 0.93 16 Total: -1.00 -71.31 377.81 2.24 -69.07 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: 0.41 Total: 15.71 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.58 Total: 14.25 kcal Atomic # 7 Polarization: -115.85 SS G_CDS: -6.72 Total: -122.57 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.06 Total: -23.74 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -71.31 2.24 -69.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337764753.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.200 kcal (2) G-P(sol) polarization free energy of solvation -71.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds