Wall clock time and date at job start Tue Mar 31 2020 10:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47131 * 2 1 4 4 C 1.53002 * 109.46969 * 60.00062 * 3 2 1 5 5 C 1.53005 * 109.47056 * 300.00368 * 3 2 1 6 6 C 1.52997 * 109.47131 * 179.97438 * 3 2 1 7 7 C 1.52999 * 109.46991 * 60.00689 * 6 3 2 8 8 C 1.52997 * 109.46991 * 180.02562 * 7 6 3 9 9 C 1.52996 * 109.47131 * 299.99311 * 8 7 6 10 10 C 1.52997 * 109.47165 * 300.00167 * 9 8 7 11 11 C 1.50702 * 109.47345 * 294.99779 * 10 9 8 12 12 O 1.21278 * 119.99529 * 0.02562 * 11 10 9 13 13 N 1.34770 * 119.99891 * 179.97438 * 11 10 9 14 14 C 1.46501 * 119.99931 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47384 * 180.02562 * 14 13 11 16 16 C 1.50702 * 109.47345 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99507 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99986 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99756 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 119.99986 * 0.02562 * 18 16 15 21 21 H 1.48505 * 109.47163 * 90.00306 * 20 18 16 22 22 H 1.48506 * 109.47194 * 209.99685 * 20 18 16 23 23 H 1.48490 * 109.47399 * 330.00134 * 20 18 16 24 24 C 1.53002 * 109.46972 * 60.00459 * 9 8 7 25 25 C 1.52997 * 109.46817 * 299.99733 * 24 9 8 26 26 H 1.09001 * 109.47502 * 60.00153 * 1 2 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47533 * 299.99495 * 1 2 3 29 29 H 1.09001 * 109.46832 * 240.00325 * 2 1 3 30 30 H 1.08992 * 109.47303 * 120.00621 * 2 1 3 31 31 H 1.09002 * 109.47067 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.47312 * 299.99939 * 4 3 2 33 33 H 1.09004 * 109.46930 * 59.99996 * 4 3 2 34 34 H 1.08998 * 109.47061 * 299.99160 * 5 3 2 35 35 H 1.09000 * 109.47360 * 59.99978 * 5 3 2 36 36 H 1.09002 * 109.46935 * 179.97438 * 5 3 2 37 37 H 1.08993 * 109.47194 * 299.99846 * 6 3 2 38 38 H 1.09002 * 109.46719 * 299.99711 * 7 6 3 39 39 H 1.08993 * 109.47839 * 59.99553 * 7 6 3 40 40 H 1.09001 * 109.47289 * 179.97438 * 8 7 6 41 41 H 1.09000 * 109.47611 * 59.99933 * 8 7 6 42 42 H 1.09000 * 109.47054 * 180.02562 * 9 8 7 43 43 H 1.08998 * 109.47097 * 55.00255 * 10 9 8 44 44 H 1.09000 * 109.46827 * 175.00210 * 10 9 8 45 45 H 0.96997 * 120.00301 * 0.02562 * 13 11 10 46 46 H 1.09006 * 109.47359 * 300.00828 * 14 13 11 47 47 H 1.09001 * 109.47238 * 60.00115 * 14 13 11 48 48 H 1.08998 * 109.47097 * 300.00590 * 15 14 13 49 49 H 1.09000 * 109.46827 * 60.00545 * 15 14 13 50 50 H 0.97001 * 119.99810 * 179.97438 * 19 18 16 51 51 H 1.09002 * 109.47070 * 179.97438 * 24 9 8 52 52 H 1.08996 * 109.47407 * 59.99513 * 24 9 8 53 53 H 1.09001 * 109.47502 * 300.00518 * 25 24 9 54 54 H 1.09001 * 109.47289 * 180.02562 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1637 1.2493 5 6 1.5299 2.1637 -1.2492 6 6 3.5699 1.4425 0.0006 7 6 4.0804 0.7212 -1.2484 8 6 5.6104 0.7206 -1.2474 9 6 6.1209 2.1629 -1.2471 10 6 5.6120 2.8843 -2.4966 11 6 6.2134 2.2489 -3.7236 12 8 6.9738 1.3110 -3.6098 13 7 5.9054 2.7222 -4.9473 14 6 6.4904 2.1048 -6.1401 15 6 5.9814 2.8262 -7.3896 16 6 6.5828 2.1907 -8.6166 17 1 7.2606 1.3561 -8.5153 18 6 6.2684 2.6756 -9.8685 19 7 6.7936 2.1213 -10.9392 20 14 5.0977 4.1205 -10.0435 21 1 5.8696 5.3889 -10.0188 22 1 4.3659 4.0115 -11.3312 23 1 4.1268 4.1100 -8.9200 24 6 5.6105 2.8843 0.0019 25 6 4.0805 2.8848 0.0010 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8898 31 1 1.8937 3.1912 1.2495 32 1 0.4399 2.1637 1.2493 33 1 1.8933 1.6498 2.1393 34 1 1.8933 1.6500 -2.1392 35 1 0.4399 2.1638 -1.2492 36 1 1.8928 3.1916 -1.2490 37 1 3.9329 0.9288 0.8908 38 1 3.7171 -0.3065 -1.2484 39 1 3.7175 1.2348 -2.1385 40 1 5.9741 0.2064 -2.1370 41 1 5.9731 0.2066 -0.3573 42 1 7.2109 2.1625 -1.2468 43 1 4.5257 2.8079 -2.5431 44 1 5.9007 3.9345 -2.4527 45 1 5.2969 3.4721 -5.0383 46 1 7.5768 2.1821 -6.0935 47 1 6.2026 1.0545 -6.1839 48 1 4.8951 2.7493 -7.4363 49 1 6.2698 3.8765 -7.3456 50 1 6.5722 2.4621 -11.8200 51 1 5.9745 3.9117 0.0024 52 1 5.9730 2.3703 0.8921 53 1 3.7178 3.3988 -0.8892 54 1 3.7167 3.3991 0.8905 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337852933.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:53 Heat of formation + Delta-G solvation = -109.101995 kcal Electronic energy + Delta-G solvation = -26974.038605 eV Core-core repulsion = 23521.824145 eV Total energy + Delta-G solvation = -3452.214460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.48805 -40.19436 -37.59053 -36.50140 -34.78309 -32.84434 -32.10304 -31.73315 -30.29744 -28.46343 -28.08440 -26.40386 -25.37804 -23.24980 -22.80828 -22.49003 -21.65185 -19.62798 -19.00558 -18.88478 -17.94903 -17.01068 -16.63654 -16.47872 -16.24025 -15.85276 -15.48565 -15.42155 -15.02692 -14.89869 -14.67276 -14.53615 -14.20749 -13.97850 -13.64559 -13.39315 -13.34904 -13.19489 -13.01352 -12.84464 -12.72302 -12.59174 -12.40316 -12.22626 -12.17692 -12.10187 -11.92191 -11.77022 -11.71597 -11.56502 -11.52870 -11.36621 -11.27331 -10.85142 -10.82444 -10.79751 -10.55572 -10.42300 -9.96955 -8.31143 -6.38664 1.38317 1.41233 1.52594 1.75563 2.36183 2.37159 3.03904 3.67962 3.75264 3.83761 3.95318 4.01386 4.12138 4.21834 4.32360 4.40853 4.43913 4.45872 4.53262 4.55845 4.59395 4.66944 4.68482 4.73813 4.74384 4.76012 4.79822 4.89592 4.91376 4.97797 5.05138 5.14013 5.17632 5.18303 5.20800 5.24915 5.26209 5.29589 5.34295 5.36412 5.39021 5.39980 5.44682 5.47167 5.56508 5.58908 5.63590 5.67690 5.76487 5.79270 6.21349 6.66013 6.73304 7.25961 7.39521 8.85868 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.016386 B = 0.002825 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.352781 B = 9907.920483 C =10711.051764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.117 4.117 3 C -0.055 4.055 4 C -0.142 4.142 5 C -0.149 4.149 6 C -0.068 4.068 7 C -0.114 4.114 8 C -0.119 4.119 9 C -0.067 4.067 10 C -0.130 4.130 11 C 0.501 3.499 12 O -0.586 6.586 13 N -0.721 5.721 14 C 0.145 3.855 15 C -0.012 4.012 16 C -0.541 4.541 17 H 0.026 0.974 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.961 3.039 21 H -0.264 1.264 22 H -0.286 1.286 23 H -0.236 1.236 24 C -0.107 4.107 25 C -0.116 4.116 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.060 0.940 40 H 0.045 0.955 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.413 0.587 46 H 0.039 0.961 47 H 0.038 0.962 48 H 0.036 0.964 49 H 0.035 0.965 50 H 0.268 0.732 51 H 0.075 0.925 52 H 0.064 0.936 53 H 0.072 0.928 54 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.215 5.294 29.122 32.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.055 4.055 4 C -0.199 4.199 5 C -0.206 4.206 6 C -0.086 4.086 7 C -0.151 4.151 8 C -0.157 4.157 9 C -0.086 4.086 10 C -0.169 4.169 11 C 0.289 3.711 12 O -0.467 6.467 13 N -0.373 5.373 14 C 0.021 3.979 15 C -0.049 4.049 16 C -0.579 4.579 17 H 0.045 0.955 18 C -0.194 4.194 19 N -0.591 5.591 20 Si 0.783 3.217 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.159 1.159 24 C -0.144 4.144 25 C -0.153 4.153 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.133 0.867 44 H 0.134 0.866 45 H 0.249 0.751 46 H 0.058 0.942 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.054 0.946 50 H 0.077 0.923 51 H 0.093 0.907 52 H 0.083 0.917 53 H 0.091 0.909 54 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.669 4.629 29.017 32.407 hybrid contribution 0.031 0.017 -1.103 1.103 sum -13.638 4.646 27.914 31.413 Atomic orbital electron populations 1.21882 0.95666 1.01417 1.02180 1.21628 0.96131 0.96312 1.01406 1.20506 0.94125 0.94917 0.95981 1.21953 1.01060 1.00487 0.96406 1.22057 1.01045 1.00607 0.96929 1.21105 0.93929 0.96367 0.97207 1.21691 0.94473 1.00234 0.98685 1.21602 0.96182 0.96681 1.01200 1.20815 0.99317 0.94774 0.93692 1.21913 1.02994 1.01651 0.90337 1.21561 0.80797 0.83109 0.85601 1.90639 1.38287 1.30504 1.87266 1.46151 1.48982 1.36578 1.05595 1.20955 0.96589 0.96214 0.84125 1.19637 0.97238 0.96488 0.91559 1.21275 1.28166 1.16907 0.91575 0.95550 1.26112 0.97899 1.00394 0.94997 1.70082 1.46161 1.43938 0.98963 0.85517 0.79282 0.78433 0.78516 1.18913 1.21208 1.15891 1.21544 0.96279 1.00504 0.96123 1.21747 0.94569 0.96073 1.02950 0.92593 0.93221 0.91909 0.92842 0.92342 0.91777 0.92317 0.92874 0.93425 0.92379 0.91645 0.91724 0.92773 0.92109 0.93585 0.92464 0.92744 0.86724 0.86593 0.75097 0.94242 0.94311 0.94536 0.94633 0.92307 0.90676 0.91721 0.90945 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.21 71.98 0.66 -1.26 16 2 C -0.12 -1.63 4.64 30.59 0.14 -1.49 16 3 C -0.06 -0.69 0.35 -52.18 -0.02 -0.71 16 4 C -0.14 -1.46 7.77 71.98 0.56 -0.90 16 5 C -0.15 -1.93 7.42 71.98 0.53 -1.40 16 6 C -0.07 -0.94 1.55 -10.79 -0.02 -0.96 16 7 C -0.11 -2.13 4.22 30.59 0.13 -2.00 16 8 C -0.12 -2.74 5.19 30.59 0.16 -2.59 16 9 C -0.07 -1.35 2.31 -10.80 -0.02 -1.38 16 10 C -0.13 -2.54 4.47 29.85 0.13 -2.41 16 11 C 0.50 15.36 7.55 87.66 0.66 16.02 16 12 O -0.59 -23.39 13.96 -3.02 -0.04 -23.43 16 13 N -0.72 -22.45 5.56 -463.06 -2.57 -25.02 16 14 C 0.15 6.04 5.61 86.38 0.48 6.53 16 15 C -0.01 -0.52 4.15 29.85 0.12 -0.39 16 16 C -0.54 -31.27 9.66 25.60 0.25 -31.02 16 17 H 0.03 1.71 7.99 -2.91 -0.02 1.69 16 18 C 0.00 0.17 5.47 84.65 0.46 0.63 16 19 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 20 Si 0.96 42.37 27.47 68.60 1.88 44.25 16 21 H -0.26 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 23 H -0.24 -9.20 6.54 99.48 0.65 -8.55 16 24 C -0.11 -1.47 5.45 30.59 0.17 -1.30 16 25 C -0.12 -1.36 4.23 30.60 0.13 -1.23 16 26 H 0.06 0.71 6.43 -2.39 -0.02 0.69 16 27 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.68 6.43 -2.39 -0.02 0.67 16 29 H 0.05 0.87 6.43 -2.39 -0.02 0.86 16 30 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.58 6.43 -2.39 -0.02 0.57 16 32 H 0.06 0.58 6.43 -2.39 -0.02 0.56 16 33 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 34 H 0.05 0.73 6.43 -2.39 -0.02 0.71 16 35 H 0.06 0.72 6.43 -2.39 -0.02 0.70 16 36 H 0.06 0.74 6.43 -2.39 -0.02 0.72 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 1.08 6.43 -2.39 -0.02 1.06 16 39 H 0.06 1.19 4.61 -2.39 -0.01 1.18 16 40 H 0.05 1.42 5.95 -2.39 -0.01 1.41 16 41 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.05 1.33 7.95 -2.39 -0.02 1.31 16 43 H 0.11 1.85 4.83 -2.39 -0.01 1.84 16 44 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.41 9.85 8.47 -92.71 -0.79 9.06 16 46 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 47 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 49 H 0.04 1.48 7.57 -2.39 -0.02 1.46 16 50 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 51 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 52 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 53 H 0.07 0.80 4.84 -2.39 -0.01 0.79 16 54 H 0.08 0.73 6.43 -2.39 -0.02 0.72 16 Total: -1.00 -71.16 384.38 4.14 -67.02 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.04 Total: 22.52 kcal Atomic # 6 Polarization: -30.38 SS G_CDS: 4.54 Total: -25.84 kcal Atomic # 7 Polarization: -82.24 SS G_CDS: -2.27 Total: -84.51 kcal Atomic # 8 Polarization: -23.39 SS G_CDS: -0.04 Total: -23.43 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 1.88 Total: 44.25 kcal Total: -71.16 4.14 -67.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337852933.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.083 kcal (2) G-P(sol) polarization free energy of solvation -71.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds