Wall clock time and date at job start Tue Mar 31 2020 10:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47489 * 2 1 4 4 C 1.52998 * 109.47303 * 59.99425 * 3 2 1 5 5 C 1.53000 * 109.46533 * 299.99712 * 3 2 1 6 6 C 1.52991 * 109.47159 * 180.02562 * 3 2 1 7 7 C 1.53003 * 109.47308 * 179.97438 * 6 3 2 8 8 C 1.52995 * 109.47639 * 179.97438 * 7 6 3 9 9 C 1.53001 * 109.46829 * 300.00136 * 8 7 6 10 10 C 1.53003 * 109.47036 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47272 * 174.99813 * 10 9 8 12 12 O 1.21281 * 119.99871 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00287 * 179.97438 * 11 10 9 14 14 C 1.46495 * 120.00388 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47378 * 35.00208 * 14 13 11 16 16 C 1.53009 * 109.47194 * 275.00617 * 14 13 11 17 17 C 1.50702 * 109.47571 * 155.00548 * 14 13 11 18 18 H 1.08002 * 119.99446 * 359.97438 * 17 14 13 19 19 C 1.37871 * 120.00072 * 180.02562 * 17 14 13 20 20 N 1.31516 * 119.99826 * 179.72119 * 19 17 14 21 21 Si 1.86800 * 120.00406 * 359.97438 * 19 17 14 22 22 H 1.48501 * 109.46758 * 269.72576 * 21 19 17 23 23 H 1.48499 * 109.47026 * 29.72423 * 21 19 17 24 24 H 1.48496 * 109.47474 * 149.72459 * 21 19 17 25 25 C 1.53002 * 109.47196 * 60.00103 * 9 8 7 26 26 C 1.52994 * 109.47338 * 299.99436 * 6 3 2 27 27 H 1.08999 * 109.47400 * 60.00156 * 1 2 3 28 28 H 1.08993 * 109.47704 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46971 * 300.00398 * 1 2 3 30 30 H 1.08999 * 109.46884 * 239.99327 * 2 1 3 31 31 H 1.09005 * 109.47041 * 119.99620 * 2 1 3 32 32 H 1.08995 * 109.47166 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.47379 * 300.00805 * 4 3 2 34 34 H 1.09005 * 109.46913 * 60.00572 * 4 3 2 35 35 H 1.09002 * 109.47538 * 299.99611 * 5 3 2 36 36 H 1.09004 * 109.47155 * 60.00103 * 5 3 2 37 37 H 1.09005 * 109.46801 * 179.97438 * 5 3 2 38 38 H 1.09002 * 109.47529 * 60.00011 * 6 3 2 39 39 H 1.08999 * 109.47242 * 59.99803 * 7 6 3 40 40 H 1.09005 * 109.46885 * 299.99972 * 7 6 3 41 41 H 1.08995 * 109.47224 * 180.02562 * 8 7 6 42 42 H 1.08999 * 109.46884 * 59.99682 * 8 7 6 43 43 H 1.08999 * 109.47017 * 299.99464 * 9 8 7 44 44 H 1.09000 * 109.47327 * 54.99470 * 10 9 8 45 45 H 1.09007 * 109.47157 * 294.99889 * 10 9 8 46 46 H 0.97008 * 119.99537 * 0.02562 * 13 11 10 47 47 H 1.09001 * 109.46592 * 299.99497 * 16 14 13 48 48 H 1.08990 * 109.47127 * 59.99623 * 16 14 13 49 49 H 1.08994 * 109.46846 * 179.97438 * 16 14 13 50 50 H 0.96999 * 120.00128 * 180.27192 * 20 19 17 51 51 H 1.08994 * 109.47211 * 59.99862 * 25 9 8 52 52 H 1.09005 * 109.46960 * 179.97438 * 25 9 8 53 53 H 1.09002 * 109.47280 * 300.00728 * 26 6 3 54 54 H 1.09007 * 109.47106 * 59.99850 * 26 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5300 2.1638 1.2491 5 6 1.5301 2.1636 -1.2493 6 6 3.5700 1.4424 -0.0006 7 6 4.0801 2.8849 -0.0013 8 6 5.6100 2.8849 -0.0013 9 6 6.1200 2.1641 1.2483 10 6 7.6500 2.1635 1.2480 11 6 8.1524 1.5637 2.5359 12 8 7.3642 1.1745 3.3716 13 7 9.4774 1.4587 2.7588 14 6 9.9658 0.8751 4.0106 15 1 9.2929 0.0780 4.3267 16 6 10.0182 1.9569 5.0914 17 6 11.3469 0.3112 3.7968 18 1 11.8139 0.3803 2.8255 19 6 12.0137 -0.2938 4.8410 20 7 13.2168 -0.7907 4.6530 21 14 11.2056 -0.4139 6.5208 22 1 11.5561 0.7840 7.3255 23 1 9.7315 -0.4861 6.3569 24 1 11.6868 -1.6350 7.2155 25 6 5.6100 0.7216 1.2489 26 6 4.0805 0.7211 1.2483 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8932 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.8930 3.1915 1.2489 33 1 0.4400 2.1638 1.2492 34 1 1.8933 1.6500 2.1392 35 1 1.8934 1.6498 -2.1393 36 1 0.4400 2.1636 -1.2493 37 1 1.8931 3.1914 -1.2491 38 1 3.9330 0.9287 -0.8909 39 1 3.7172 3.3990 0.8887 40 1 3.7164 3.3984 -0.8913 41 1 5.9734 3.9125 -0.0013 42 1 5.9733 2.3706 -0.8910 43 1 5.7567 2.6784 2.1380 44 1 8.0137 3.1871 1.1577 45 1 8.0130 1.5734 0.4064 46 1 10.1078 1.7697 2.0902 47 1 10.6913 2.7539 4.7752 48 1 9.0194 2.3647 5.2460 49 1 10.3812 1.5225 6.0228 50 1 13.6843 -1.2199 5.3865 51 1 5.9733 0.2074 0.3592 52 1 5.9736 0.2080 2.1389 53 1 3.7175 1.2348 2.1385 54 1 3.7171 -0.3066 1.2484 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338117890.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:01 Heat of formation + Delta-G solvation = -102.293297 kcal Electronic energy + Delta-G solvation = -26920.618735 eV Core-core repulsion = 23468.699523 eV Total energy + Delta-G solvation = -3451.919212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18739 -40.28105 -37.60543 -36.60554 -34.38807 -33.24917 -31.94391 -31.62923 -30.32641 -28.15973 -27.71080 -27.20046 -25.27168 -23.40238 -23.10091 -22.07676 -21.10044 -20.60344 -19.07409 -18.91944 -17.62734 -17.32083 -16.56437 -16.32595 -16.00877 -15.66012 -15.53971 -15.04503 -15.01355 -14.94433 -14.73148 -14.34945 -14.18575 -14.08670 -13.64225 -13.48709 -13.35119 -13.22399 -13.05220 -12.88423 -12.78382 -12.68261 -12.60324 -12.29869 -12.17246 -12.13075 -11.85835 -11.75656 -11.62329 -11.59447 -11.37799 -11.28236 -11.27673 -11.01411 -10.88546 -10.86072 -10.55827 -10.33425 -9.78889 -8.39529 -6.44949 1.25205 1.33523 1.43164 1.86695 2.24606 2.56042 2.96710 3.69081 3.78553 3.84751 3.96707 3.99974 4.10404 4.23830 4.39619 4.44032 4.46153 4.54616 4.56846 4.58141 4.62579 4.64738 4.69519 4.71903 4.73869 4.76063 4.83295 4.88374 4.92365 4.95185 4.99766 5.06399 5.14484 5.15904 5.17844 5.22841 5.23979 5.27414 5.32780 5.35049 5.37346 5.39757 5.41997 5.44937 5.56086 5.58387 5.63067 5.70634 5.75912 5.79122 6.14779 6.57121 6.95066 7.19230 7.54812 8.75804 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.026518 B = 0.002604 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.619910 B =10750.628929 C =11173.568914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.056 4.056 4 C -0.146 4.146 5 C -0.142 4.142 6 C -0.069 4.069 7 C -0.112 4.112 8 C -0.108 4.108 9 C -0.063 4.063 10 C -0.129 4.129 11 C 0.498 3.502 12 O -0.590 6.590 13 N -0.707 5.707 14 C 0.241 3.759 15 H 0.018 0.982 16 C -0.154 4.154 17 C -0.532 4.532 18 H 0.057 0.943 19 C 0.028 3.972 20 N -0.934 5.934 21 Si 0.939 3.061 22 H -0.260 1.260 23 H -0.265 1.265 24 H -0.292 1.292 25 C -0.119 4.119 26 C -0.108 4.108 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.045 0.955 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.067 0.933 39 H 0.059 0.941 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.115 0.885 45 H 0.107 0.893 46 H 0.406 0.594 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.039 0.961 50 H 0.270 0.730 51 H 0.057 0.943 52 H 0.044 0.956 53 H 0.052 0.948 54 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.880 8.892 -13.500 28.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.056 4.056 4 C -0.203 4.203 5 C -0.199 4.199 6 C -0.088 4.088 7 C -0.150 4.150 8 C -0.145 4.145 9 C -0.082 4.082 10 C -0.169 4.169 11 C 0.286 3.714 12 O -0.471 6.471 13 N -0.356 5.356 14 C 0.136 3.864 15 H 0.036 0.964 16 C -0.212 4.212 17 C -0.570 4.570 18 H 0.075 0.925 19 C -0.172 4.172 20 N -0.573 5.573 21 Si 0.767 3.233 22 H -0.185 1.185 23 H -0.190 1.190 24 H -0.219 1.219 25 C -0.157 4.157 26 C -0.145 4.145 27 H 0.081 0.919 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.133 0.867 45 H 0.125 0.875 46 H 0.241 0.759 47 H 0.084 0.916 48 H 0.063 0.937 49 H 0.057 0.943 50 H 0.079 0.921 51 H 0.076 0.924 52 H 0.063 0.937 53 H 0.071 0.929 54 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.265 8.526 -12.833 28.743 hybrid contribution 0.710 -0.516 0.968 1.307 sum -23.555 8.010 -11.864 27.564 Atomic orbital electron populations 1.21876 0.95467 1.01508 1.02195 1.21628 0.96282 0.96076 1.01478 1.20509 0.94040 0.95117 0.95937 1.22018 1.00973 1.00296 0.97025 1.21949 1.01129 1.00371 0.96405 1.21130 0.94132 0.96210 0.97304 1.21664 0.94802 0.96167 1.02324 1.21570 0.95985 1.00473 0.96508 1.20832 0.92047 0.96410 0.98940 1.21816 0.97645 1.03469 0.93939 1.21515 0.81859 0.78240 0.89782 1.90599 1.55998 1.51391 1.49148 1.46118 1.07025 1.61831 1.20622 1.18704 0.93217 0.91570 0.82889 0.96370 1.22327 1.00143 1.00123 0.98571 1.21285 0.99755 1.37895 0.98080 0.92517 1.25564 0.94977 0.94296 1.02347 1.69976 1.13845 1.39412 1.34051 0.85996 0.79438 0.77353 0.80518 1.18521 1.18971 1.21939 1.21639 0.96317 0.96698 1.01030 1.21579 0.94472 1.00065 0.98391 0.91869 0.93044 0.92577 0.92238 0.92845 0.92321 0.92112 0.93637 0.92682 0.92122 0.92016 0.91414 0.92261 0.90328 0.90784 0.91134 0.92658 0.86682 0.87484 0.75851 0.91645 0.93694 0.94291 0.92059 0.92428 0.93714 0.92927 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.21 71.98 0.66 -1.31 16 2 C -0.12 -1.77 4.64 30.59 0.14 -1.63 16 3 C -0.06 -0.81 0.35 -52.19 -0.02 -0.83 16 4 C -0.15 -2.23 7.42 71.98 0.53 -1.70 16 5 C -0.14 -1.68 7.77 71.98 0.56 -1.12 16 6 C -0.07 -1.16 1.55 -10.80 -0.02 -1.18 16 7 C -0.11 -1.73 4.50 30.59 0.14 -1.59 16 8 C -0.11 -1.78 5.20 30.59 0.16 -1.62 16 9 C -0.06 -1.49 1.84 -10.79 -0.02 -1.51 16 10 C -0.13 -3.13 5.17 29.85 0.15 -2.97 16 11 C 0.50 18.04 7.51 87.66 0.66 18.70 16 12 O -0.59 -26.02 13.63 -3.03 -0.04 -26.06 16 13 N -0.71 -27.66 5.07 -446.09 -2.26 -29.92 16 14 C 0.24 11.63 2.15 44.25 0.10 11.73 16 15 H 0.02 0.99 6.63 -2.39 -0.02 0.98 16 16 C -0.15 -6.79 8.96 71.99 0.65 -6.15 16 17 C -0.53 -29.34 9.31 25.60 0.24 -29.10 16 18 H 0.06 3.31 7.98 -2.91 -0.02 3.29 16 19 C 0.03 1.59 5.45 84.65 0.46 2.05 16 20 N -0.93 -56.46 13.96 21.45 0.30 -56.16 16 21 Si 0.94 45.51 24.37 68.60 1.67 47.18 16 22 H -0.26 -11.79 6.88 99.48 0.68 -11.11 16 23 H -0.26 -12.86 6.52 99.48 0.65 -12.21 16 24 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 25 C -0.12 -3.14 4.94 30.58 0.15 -2.99 16 26 C -0.11 -2.39 4.50 30.58 0.14 -2.25 16 27 H 0.06 0.71 6.43 -2.39 -0.02 0.70 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.72 6.43 -2.38 -0.02 0.71 16 30 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 0.94 6.43 -2.38 -0.02 0.92 16 32 H 0.06 0.87 6.43 -2.39 -0.02 0.85 16 33 H 0.06 0.82 6.43 -2.39 -0.02 0.81 16 34 H 0.04 0.81 6.43 -2.38 -0.02 0.80 16 35 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 0.66 6.43 -2.38 -0.02 0.64 16 37 H 0.06 0.68 6.43 -2.38 -0.02 0.67 16 38 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 0.99 6.43 -2.39 -0.02 0.98 16 40 H 0.08 0.98 6.43 -2.38 -0.02 0.96 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 1.53 7.96 -2.39 -0.02 1.51 16 44 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.11 2.24 8.14 -2.38 -0.02 2.22 16 46 H 0.41 13.80 8.54 -92.70 -0.79 13.01 16 47 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 48 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.04 1.76 3.28 -2.39 -0.01 1.75 16 50 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 51 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.04 1.55 5.95 -2.38 -0.01 1.54 16 53 H 0.05 1.27 6.43 -2.39 -0.02 1.26 16 54 H 0.06 1.26 6.43 -2.38 -0.02 1.24 16 Total: -1.00 -66.56 383.35 4.35 -62.21 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 0.00 Total: 26.24 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.68 Total: -23.49 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -1.96 Total: -86.08 kcal Atomic # 8 Polarization: -26.02 SS G_CDS: -0.04 Total: -26.06 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.67 Total: 47.18 kcal Total: -66.56 4.35 -62.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338117890.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.087 kcal (2) G-P(sol) polarization free energy of solvation -66.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds