Wall clock time and date at job start Tue Mar 31 2020 10:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46562 * 2 1 4 4 C 1.53001 * 109.46710 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.46922 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47371 * 179.97438 * 5 4 3 7 7 C 1.52997 * 109.47371 * 179.97438 * 6 5 4 8 8 C 1.53001 * 109.46922 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.46922 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47382 * 179.97438 * 9 8 7 11 11 O 1.21283 * 119.99658 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00452 * 179.97438 * 10 9 8 13 13 C 1.46926 * 120.63302 * 180.02562 * 12 10 9 14 14 C 1.53191 * 108.89109 * 233.67613 * 13 12 10 15 15 C 1.53035 * 109.31327 * 305.29292 * 14 13 12 16 16 C 1.50709 * 109.45964 * 181.37529 * 15 14 13 17 17 H 1.07997 * 119.99916 * 359.97438 * 16 15 14 18 18 C 1.37872 * 119.99864 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99852 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 120.00061 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47126 * 90.00041 * 20 18 16 22 22 H 1.48500 * 109.47187 * 209.99810 * 20 18 16 23 23 H 1.48499 * 109.47129 * 329.99807 * 20 18 16 24 24 C 1.53038 * 109.54175 * 61.36680 * 15 14 13 25 25 C 1.47207 * 120.81153 * 0.14103 * 12 10 9 26 26 H 1.09000 * 109.47716 * 59.99849 * 1 2 3 27 27 H 1.09006 * 109.46598 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47355 * 299.99482 * 1 2 3 29 29 H 1.08997 * 109.47223 * 240.00870 * 2 1 3 30 30 H 1.08996 * 109.47520 * 119.99682 * 2 1 3 31 31 H 1.08997 * 109.46641 * 60.00514 * 3 2 1 32 32 H 1.08996 * 109.46943 * 300.00035 * 3 2 1 33 33 H 1.08998 * 109.47498 * 59.99871 * 4 3 2 34 34 H 1.09008 * 109.47038 * 299.99975 * 4 3 2 35 35 H 1.09001 * 109.47635 * 59.99966 * 5 4 3 36 36 H 1.08995 * 109.47336 * 299.99856 * 5 4 3 37 37 H 1.09001 * 109.46551 * 59.99569 * 6 5 4 38 38 H 1.09003 * 109.46667 * 300.00284 * 6 5 4 39 39 H 1.08998 * 109.47350 * 59.99789 * 7 6 5 40 40 H 1.08996 * 109.46626 * 299.99895 * 7 6 5 41 41 H 1.08998 * 109.47498 * 59.99612 * 8 7 6 42 42 H 1.09004 * 109.46843 * 299.99247 * 8 7 6 43 43 H 1.08998 * 109.47350 * 59.99522 * 9 8 7 44 44 H 1.09003 * 109.47457 * 299.99533 * 9 8 7 45 45 H 1.09002 * 109.58861 * 113.81616 * 13 12 10 46 46 H 1.08996 * 109.58519 * 353.53507 * 13 12 10 47 47 H 1.09003 * 109.49975 * 65.24379 * 14 13 12 48 48 H 1.09000 * 109.49553 * 185.30642 * 14 13 12 49 49 H 1.09004 * 109.45942 * 301.34050 * 15 14 13 50 50 H 0.97003 * 119.99843 * 180.02562 * 19 18 16 51 51 H 1.09002 * 109.49557 * 58.58503 * 24 15 14 52 52 H 1.08996 * 109.50003 * 178.68400 * 24 15 14 53 53 H 1.08996 * 109.53610 * 6.53712 * 25 12 10 54 54 H 1.09002 * 109.68003 * 246.23180 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4427 -0.0006 5 6 4.0798 2.8852 0.0000 6 6 5.6098 2.8853 0.0000 7 6 6.1197 4.3278 0.0000 8 6 7.6498 4.3279 -0.0006 9 6 8.1597 5.7704 0.0000 10 6 9.6667 5.7705 0.0000 11 8 10.2731 4.7202 -0.0009 12 7 10.3405 6.9377 0.0000 13 6 11.8097 6.9540 -0.0006 14 6 12.2966 7.8177 1.1672 15 6 11.6555 9.2041 1.0730 16 6 12.1584 10.0675 2.2012 17 1 12.8641 9.6674 2.9142 18 6 11.7176 11.3682 2.3232 19 7 12.1561 12.1214 3.3081 20 14 10.4976 12.0605 1.0896 21 1 9.1141 11.8092 1.5672 22 1 10.7140 13.5227 0.9466 23 1 10.6949 11.4000 -0.2257 24 6 10.1340 9.0724 1.1713 25 6 9.6226 8.2228 0.0031 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6765 1.9563 0.8900 32 1 1.6765 1.9564 -0.8900 33 1 3.9329 0.9290 -0.8908 34 1 3.9336 0.9287 0.8892 35 1 3.7168 3.3985 0.8904 36 1 3.7161 3.3995 -0.8895 37 1 5.9731 2.3718 -0.8902 38 1 5.9731 2.3711 0.8898 39 1 5.7564 4.8417 0.8899 40 1 5.7564 4.8415 -0.8900 41 1 8.0128 3.8141 -0.8908 42 1 8.0134 3.8140 0.8892 43 1 7.7966 6.2837 0.8904 44 1 7.7960 6.2847 -0.8896 45 1 12.1701 7.3729 -0.9401 46 1 12.1863 5.9377 0.1147 47 1 12.0128 7.3490 2.1095 48 1 13.3813 7.9140 1.1209 49 1 11.9196 9.6623 0.1198 50 1 11.8457 13.0364 3.3941 51 1 9.8706 8.5918 2.1136 52 1 9.6795 10.0621 1.1276 53 1 8.5541 8.0432 0.1221 54 1 9.8026 8.7462 -0.9359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397171172.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:43 Heat of formation + Delta-G solvation = -109.399739 kcal Electronic energy + Delta-G solvation = -25221.094325 eV Core-core repulsion = 21768.866955 eV Total energy + Delta-G solvation = -3452.227371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17988 -38.69260 -37.82601 -36.17251 -35.30544 -33.91181 -33.31077 -32.13825 -30.64047 -28.44246 -27.32632 -24.98939 -24.16724 -23.80574 -22.26990 -21.87039 -21.54517 -21.23393 -19.71494 -18.86833 -18.04881 -17.18801 -16.81427 -16.70923 -16.52867 -15.94094 -15.29948 -15.08288 -14.97590 -14.91523 -14.76267 -14.42428 -14.22543 -14.11346 -13.94446 -13.72936 -13.57563 -13.44219 -13.11364 -12.82928 -12.73455 -12.43391 -12.33597 -12.27936 -12.08504 -12.05761 -11.90547 -11.78168 -11.68702 -11.59090 -11.49580 -11.35686 -11.27443 -11.20610 -11.06472 -11.02043 -10.70204 -10.61206 -9.57555 -8.27380 -6.32941 1.32761 1.40782 1.51354 1.66245 2.08095 2.35975 3.07648 3.51722 3.75124 3.97354 3.99548 4.08293 4.09637 4.11593 4.17457 4.22963 4.25902 4.30184 4.38089 4.45143 4.47872 4.52241 4.54657 4.67145 4.73989 4.76858 4.77953 4.80721 4.85318 4.89240 4.95396 4.98423 5.00344 5.04901 5.06664 5.10712 5.13837 5.21486 5.23371 5.23830 5.30691 5.38988 5.42195 5.42771 5.51622 5.57104 5.58638 5.60651 5.67795 5.75074 6.31872 6.49611 6.74062 7.20137 7.32728 8.89777 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.022219 B = 0.001914 C = 0.001811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.852896 B =14626.008590 C =15453.143551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.127 4.127 3 C -0.119 4.119 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.098 4.098 9 C -0.135 4.135 10 C 0.507 3.493 11 O -0.591 6.591 12 N -0.609 5.609 13 C 0.115 3.885 14 C -0.106 4.106 15 C 0.014 3.986 16 C -0.523 4.523 17 H 0.023 0.977 18 C 0.005 3.995 19 N -0.955 5.955 20 Si 0.953 3.047 21 H -0.257 1.257 22 H -0.304 1.304 23 H -0.235 1.235 24 C -0.134 4.134 25 C 0.108 3.892 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.056 0.944 42 H 0.048 0.952 43 H 0.108 0.892 44 H 0.119 0.881 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.039 0.961 48 H 0.062 0.938 49 H 0.033 0.967 50 H 0.265 0.735 51 H 0.053 0.947 52 H 0.055 0.945 53 H 0.115 0.885 54 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.483 -18.571 -11.679 31.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.156 4.156 4 C -0.158 4.158 5 C -0.153 4.153 6 C -0.157 4.157 7 C -0.150 4.150 8 C -0.136 4.136 9 C -0.175 4.175 10 C 0.297 3.703 11 O -0.473 6.473 12 N -0.341 5.341 13 C -0.008 4.008 14 C -0.144 4.144 15 C -0.005 4.005 16 C -0.561 4.561 17 H 0.042 0.958 18 C -0.191 4.191 19 N -0.595 5.595 20 Si 0.779 3.221 21 H -0.183 1.183 22 H -0.233 1.233 23 H -0.158 1.158 24 C -0.172 4.172 25 C -0.014 4.014 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.126 0.874 44 H 0.137 0.863 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.058 0.942 48 H 0.081 0.919 49 H 0.051 0.949 50 H 0.073 0.927 51 H 0.072 0.928 52 H 0.073 0.927 53 H 0.133 0.867 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.168 -18.964 -11.606 31.396 hybrid contribution 0.396 0.802 0.440 0.996 sum -21.772 -18.162 -11.165 30.472 Atomic orbital electron populations 1.21788 0.95611 1.01830 1.01882 1.21556 0.96147 0.96900 1.01885 1.21615 0.95193 0.96804 1.02020 1.21608 0.95510 0.96866 1.01803 1.21572 0.94756 0.96785 1.02225 1.21579 0.95735 0.96667 1.01727 1.21569 0.93292 0.97225 1.02945 1.21288 0.96069 0.94307 1.01981 1.21803 0.88899 1.00567 1.06201 1.21453 0.91932 0.82316 0.74577 1.90634 1.71684 1.32307 1.52662 1.48354 1.07033 1.06633 1.72105 1.21575 0.79968 1.00535 0.98689 1.21693 1.00016 0.95633 0.97106 1.19096 0.92495 0.93104 0.95830 1.21387 1.25809 0.97095 1.11838 0.95814 1.26038 0.98551 0.97168 0.97361 1.70085 1.46645 1.08970 1.33816 0.85777 0.79300 0.76018 0.80998 1.18255 1.23254 1.15788 1.22233 0.97956 0.98628 0.98392 1.22038 0.97636 0.82830 0.98929 0.92627 0.92500 0.92759 0.92118 0.92280 0.92154 0.91944 0.92189 0.92466 0.91993 0.91624 0.92291 0.92737 0.91332 0.90688 0.92497 0.93275 0.87389 0.86251 0.90366 0.90399 0.94238 0.91895 0.94939 0.92663 0.92809 0.92715 0.86710 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 9.91 71.98 0.71 -0.70 16 2 C -0.13 -1.31 5.93 30.60 0.18 -1.12 16 3 C -0.12 -1.27 5.21 30.60 0.16 -1.11 16 4 C -0.12 -1.41 5.21 30.59 0.16 -1.25 16 5 C -0.12 -1.39 5.21 30.59 0.16 -1.23 16 6 C -0.12 -1.69 5.21 30.59 0.16 -1.53 16 7 C -0.11 -1.61 5.21 30.59 0.16 -1.45 16 8 C -0.10 -1.94 4.50 30.59 0.14 -1.80 16 9 C -0.14 -2.67 4.05 29.85 0.12 -2.55 16 10 C 0.51 14.97 7.70 87.66 0.68 15.64 16 11 O -0.59 -21.89 15.39 -3.04 -0.05 -21.94 16 12 N -0.61 -18.35 2.98 -818.12 -2.44 -20.80 16 13 C 0.12 3.77 6.42 86.36 0.55 4.32 16 14 C -0.11 -4.16 5.30 30.67 0.16 -4.00 16 15 C 0.01 0.59 1.66 -11.51 -0.02 0.57 16 16 C -0.52 -29.34 9.14 25.60 0.23 -29.10 16 17 H 0.02 1.50 7.99 -2.91 -0.02 1.48 16 18 C 0.01 0.29 5.45 84.65 0.46 0.75 16 19 N -0.95 -59.31 13.96 21.45 0.30 -59.01 16 20 Si 0.95 41.94 24.38 68.60 1.67 43.61 16 21 H -0.26 -10.39 6.86 99.48 0.68 -9.71 16 22 H -0.30 -13.71 7.11 99.48 0.71 -13.00 16 23 H -0.23 -9.11 6.53 99.48 0.65 -8.46 16 24 C -0.13 -4.95 4.85 30.68 0.15 -4.80 16 25 C 0.11 2.89 6.35 86.32 0.55 3.44 16 26 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 27 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 42 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 43 H 0.11 1.87 7.70 -2.39 -0.02 1.85 16 44 H 0.12 1.71 7.95 -2.39 -0.02 1.69 16 45 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.08 2.65 7.00 -2.39 -0.02 2.63 16 47 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 49 H 0.03 1.40 7.20 -2.39 -0.02 1.38 16 50 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 52 H 0.05 2.07 3.24 -2.39 -0.01 2.06 16 53 H 0.11 2.22 5.97 -2.39 -0.01 2.20 16 54 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -69.33 408.96 4.93 -64.40 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: 0.72 Total: 19.65 kcal Atomic # 6 Polarization: -30.64 SS G_CDS: 4.72 Total: -25.92 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -2.14 Total: -79.81 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.05 Total: -21.94 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 1.67 Total: 43.61 kcal Total: -69.33 4.93 -64.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397171172.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.996 kcal (2) G-P(sol) polarization free energy of solvation -69.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds