Wall clock time and date at job start Tue Mar 31 2020 10:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46847 * 2 1 4 4 C 1.53000 * 109.46683 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46919 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.47083 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47050 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47050 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.47372 * 180.02562 * 8 7 6 10 10 C 1.50693 * 109.47552 * 180.02562 * 9 8 7 11 11 O 1.21289 * 119.99967 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00575 * 179.97438 * 10 9 8 13 13 C 1.46931 * 120.62462 * 0.02562 * 12 10 9 14 14 C 1.53187 * 108.77274 * 233.62733 * 13 12 10 15 15 C 1.53049 * 109.31497 * 305.36469 * 14 13 12 16 16 C 1.53039 * 109.53353 * 61.36666 * 15 14 13 17 17 H 1.09002 * 109.49751 * 58.58726 * 16 15 14 18 18 C 1.50704 * 109.49530 * 178.65349 * 16 15 14 19 19 H 1.08000 * 120.00137 * 119.93517 * 18 16 15 20 20 C 1.37880 * 119.99774 * 299.93494 * 18 16 15 21 21 N 1.31516 * 120.00128 * 359.97438 * 20 18 16 22 22 Si 1.86792 * 119.99950 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47130 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.47098 * 119.99710 * 22 20 18 25 25 H 1.48497 * 109.47530 * 239.99621 * 22 20 18 26 26 C 1.46925 * 120.63519 * 180.02562 * 12 10 9 27 27 H 1.09002 * 109.46994 * 299.99908 * 1 2 3 28 28 H 1.08997 * 109.47399 * 59.99927 * 1 2 3 29 29 H 1.08998 * 109.47085 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46858 * 239.99318 * 2 1 3 31 31 H 1.09000 * 109.46898 * 120.00143 * 2 1 3 32 32 H 1.08989 * 109.47566 * 60.00146 * 3 2 1 33 33 H 1.08998 * 109.46922 * 299.99282 * 3 2 1 34 34 H 1.09006 * 109.47589 * 59.99510 * 4 3 2 35 35 H 1.09003 * 109.47232 * 299.99398 * 4 3 2 36 36 H 1.08998 * 109.47430 * 60.00101 * 5 4 3 37 37 H 1.08998 * 109.46945 * 299.99097 * 5 4 3 38 38 H 1.09006 * 109.47227 * 59.99804 * 6 5 4 39 39 H 1.08997 * 109.47399 * 300.00245 * 6 5 4 40 40 H 1.08998 * 109.47167 * 60.00625 * 7 6 5 41 41 H 1.08992 * 109.47627 * 299.99799 * 7 6 5 42 42 H 1.09006 * 109.47227 * 60.00147 * 8 7 6 43 43 H 1.08997 * 109.47399 * 300.00588 * 8 7 6 44 44 H 1.08993 * 109.47505 * 59.99577 * 9 8 7 45 45 H 1.09005 * 109.46900 * 299.99780 * 9 8 7 46 46 H 1.09002 * 109.58421 * 113.84017 * 13 12 10 47 47 H 1.08993 * 109.70684 * 353.48793 * 13 12 10 48 48 H 1.09006 * 109.49516 * 185.41853 * 14 13 12 49 49 H 1.08993 * 109.49868 * 65.31880 * 14 13 12 50 50 H 1.08998 * 109.45961 * 301.34644 * 15 14 13 51 51 H 1.08993 * 109.45850 * 181.38486 * 15 14 13 52 52 H 0.96999 * 119.99883 * 179.97438 * 21 20 18 53 53 H 1.09005 * 109.58300 * 6.58314 * 26 12 10 54 54 H 1.08998 * 109.58651 * 246.16254 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4424 -0.0006 5 6 4.0799 2.8850 -0.0013 6 6 5.6100 2.8850 -0.0013 7 6 6.1199 4.3275 -0.0026 8 6 7.6500 4.3275 -0.0019 9 6 8.1600 5.7699 -0.0026 10 6 9.6670 5.7700 -0.0026 11 8 10.2734 4.7196 -0.0016 12 7 10.3409 6.9371 -0.0036 13 6 9.6203 8.2176 -0.0042 14 6 10.1276 9.0683 -1.1728 15 6 11.6491 9.2033 -1.0775 16 6 12.2928 7.8182 -1.1732 17 1 12.0081 7.3490 -2.1150 18 6 13.7924 7.9552 -1.1125 19 1 14.3471 7.4731 -0.3212 20 6 14.4561 8.6961 -2.0673 21 7 13.7807 9.2828 -3.0313 22 14 16.3149 8.8653 -1.9925 23 1 16.8336 8.1142 -0.8212 24 1 16.9124 8.3161 -3.2362 25 1 16.6765 10.2996 -1.8612 26 6 11.8101 6.9533 -0.0042 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9286 0.8892 36 1 3.7170 3.3991 0.8887 37 1 3.7164 3.3985 -0.8913 38 1 5.9733 2.3707 -0.8911 39 1 5.9733 2.3715 0.8889 40 1 5.7567 4.8420 0.8870 41 1 5.7567 4.8405 -0.8929 42 1 8.0137 3.8127 -0.8913 43 1 8.0130 3.8145 0.8886 44 1 7.7963 6.2843 0.8868 45 1 7.7971 6.2832 -0.8931 46 1 9.8032 8.7402 0.9347 47 1 8.5515 8.0378 -0.1200 48 1 9.6711 10.0571 -1.1280 49 1 9.8633 8.5873 -2.1145 50 1 11.9140 9.6618 -0.1248 51 1 12.0099 9.8287 -1.8940 52 1 14.2476 9.8043 -3.7027 53 1 12.1866 5.9371 -0.1214 54 1 12.1712 7.3730 0.9347 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397588841.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:54 Heat of formation + Delta-G solvation = -115.789191 kcal Electronic energy + Delta-G solvation = -25122.887753 eV Core-core repulsion = 21670.383315 eV Total energy + Delta-G solvation = -3452.504438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.09860 -38.51762 -37.80279 -36.15802 -35.37010 -33.80042 -33.00514 -32.04299 -30.62585 -27.85272 -26.91291 -25.93075 -24.18697 -23.30712 -22.26859 -21.86544 -21.53387 -21.20712 -19.65620 -18.52839 -17.79997 -17.17140 -16.78956 -16.64430 -16.46736 -15.85553 -15.12857 -14.99782 -14.98454 -14.90304 -14.60218 -14.43528 -14.13764 -13.97713 -13.82829 -13.59400 -13.50729 -13.13811 -12.90454 -12.75023 -12.71488 -12.62360 -12.40846 -12.31084 -12.06055 -11.95294 -11.86174 -11.81351 -11.68314 -11.60041 -11.58243 -11.34933 -11.27155 -11.26546 -11.07687 -10.84992 -10.61869 -10.43248 -9.46558 -8.12232 -6.27522 1.38370 1.40629 1.52035 1.71341 2.17298 2.43137 3.14204 3.57824 3.76963 4.00120 4.02924 4.10424 4.13989 4.17786 4.26634 4.30226 4.33024 4.40939 4.48512 4.52703 4.55949 4.58343 4.68062 4.75188 4.78661 4.81824 4.86166 4.88063 4.90042 4.98515 4.99845 5.01386 5.07803 5.10897 5.13205 5.22105 5.24010 5.24421 5.29926 5.31926 5.42533 5.43475 5.48975 5.52481 5.57879 5.58535 5.60388 5.61269 5.92368 6.13161 6.33710 6.61942 6.82258 7.27977 7.40777 8.91622 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.036407 B = 0.001713 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.906726 B =16340.814228 C =16614.887679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.121 4.121 7 C -0.110 4.110 8 C -0.101 4.101 9 C -0.128 4.128 10 C 0.496 3.504 11 O -0.602 6.602 12 N -0.611 5.611 13 C 0.109 3.891 14 C -0.129 4.129 15 C -0.106 4.106 16 C 0.040 3.960 17 H -0.015 1.015 18 C -0.539 4.539 19 H 0.051 0.949 20 C 0.018 3.982 21 N -0.913 5.913 22 Si 0.955 3.045 23 H -0.269 1.269 24 H -0.283 1.283 25 H -0.275 1.275 26 C 0.129 3.871 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.122 0.878 45 H 0.112 0.888 46 H 0.081 0.919 47 H 0.118 0.882 48 H 0.091 0.909 49 H 0.044 0.956 50 H 0.037 0.963 51 H 0.061 0.939 52 H 0.262 0.738 53 H 0.048 0.952 54 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.025 -8.335 7.408 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.165 4.165 3 C -0.155 4.155 4 C -0.159 4.159 5 C -0.152 4.152 6 C -0.159 4.159 7 C -0.147 4.147 8 C -0.139 4.139 9 C -0.167 4.167 10 C 0.287 3.713 11 O -0.484 6.484 12 N -0.342 5.342 13 C -0.012 4.012 14 C -0.167 4.167 15 C -0.144 4.144 16 C 0.021 3.979 17 H 0.003 0.997 18 C -0.577 4.577 19 H 0.069 0.931 20 C -0.182 4.182 21 N -0.552 5.552 22 Si 0.781 3.219 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.200 1.200 26 C 0.006 3.994 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.096 0.904 41 H 0.090 0.910 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.140 0.860 45 H 0.130 0.870 46 H 0.099 0.901 47 H 0.136 0.864 48 H 0.109 0.891 49 H 0.063 0.937 50 H 0.056 0.944 51 H 0.080 0.920 52 H 0.071 0.929 53 H 0.067 0.933 54 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.694 -8.754 7.265 28.100 hybrid contribution 1.756 0.000 -0.447 1.812 sum -23.938 -8.754 6.818 26.385 Atomic orbital electron populations 1.21783 0.95537 1.01820 1.01920 1.21558 0.96204 0.96941 1.01829 1.21604 0.95056 0.96777 1.02096 1.21617 0.95622 0.96926 1.01720 1.21563 0.94505 0.96760 1.02361 1.21591 0.95930 0.96747 1.01590 1.21553 0.92814 0.97206 1.03157 1.21307 0.96400 0.94470 1.01707 1.21764 0.88119 1.00475 1.06338 1.21703 0.92269 0.82476 0.74863 1.90631 1.71980 1.32824 1.52965 1.48445 1.06975 1.07170 1.71646 1.21999 0.97384 0.82658 0.99164 1.21923 0.96430 1.00434 0.97871 1.21421 0.93717 0.98748 1.00531 1.18892 0.94267 0.93034 0.91715 0.99727 1.21481 0.93030 1.31598 1.11633 0.93120 1.25683 1.02615 0.95066 0.94791 1.70015 1.36706 1.33774 1.14722 0.85549 0.80406 0.78030 0.77935 1.19377 1.20854 1.20006 1.21513 0.79128 0.99644 0.99101 0.92594 0.92687 0.92544 0.92345 0.92209 0.91856 0.92040 0.92562 0.92327 0.91476 0.91778 0.92923 0.92500 0.90429 0.90994 0.93658 0.92890 0.85956 0.87016 0.90084 0.86362 0.89097 0.93718 0.94446 0.92013 0.92913 0.93310 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.73 16 2 C -0.13 -1.37 5.93 30.59 0.18 -1.19 16 3 C -0.12 -1.30 5.21 30.59 0.16 -1.14 16 4 C -0.12 -1.52 5.21 30.60 0.16 -1.36 16 5 C -0.11 -1.44 5.21 30.60 0.16 -1.28 16 6 C -0.12 -1.88 5.21 30.59 0.16 -1.73 16 7 C -0.11 -1.70 5.21 30.59 0.16 -1.54 16 8 C -0.10 -2.28 4.50 30.59 0.14 -2.14 16 9 C -0.13 -2.85 4.05 29.84 0.12 -2.72 16 10 C 0.50 17.56 7.70 87.65 0.67 18.23 16 11 O -0.60 -27.04 15.40 -3.06 -0.05 -27.09 16 12 N -0.61 -22.19 2.97 -818.85 -2.43 -24.62 16 13 C 0.11 2.97 6.34 86.36 0.55 3.52 16 14 C -0.13 -4.27 6.08 30.67 0.19 -4.08 16 15 C -0.11 -4.79 4.96 30.62 0.15 -4.63 16 16 C 0.04 2.07 2.25 -11.45 -0.03 2.04 16 17 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 18 C -0.54 -30.46 8.56 25.60 0.22 -30.24 16 19 H 0.05 2.85 7.74 -2.91 -0.02 2.82 16 20 C 0.02 0.98 5.30 84.66 0.45 1.43 16 21 N -0.91 -52.71 11.32 21.45 0.24 -52.47 16 22 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 25 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 26 C 0.13 5.84 5.66 86.37 0.49 6.32 16 27 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.04 1.22 8.10 -2.38 -0.02 1.20 16 43 H 0.05 1.34 8.10 -2.39 -0.02 1.32 16 44 H 0.12 1.95 7.94 -2.39 -0.02 1.93 16 45 H 0.11 2.07 7.70 -2.38 -0.02 2.05 16 46 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.12 2.16 5.94 -2.39 -0.01 2.15 16 48 H 0.09 2.44 8.14 -2.38 -0.02 2.42 16 49 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 51 H 0.06 3.21 6.04 -2.39 -0.01 3.20 16 52 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 53 H 0.05 2.45 7.01 -2.38 -0.02 2.44 16 54 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -69.16 415.73 5.23 -63.93 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.80 Total: 15.35 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: 4.64 Total: -21.25 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -2.19 Total: -77.09 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.05 Total: -27.09 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.16 5.23 -63.93 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397588841.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.859 kcal (2) G-P(sol) polarization free energy of solvation -69.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds