Wall clock time and date at job start Tue Mar 31 2020 09:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 C 1.52997 * 109.47083 * 239.99891 * 2 1 3 5 5 N 1.46908 * 109.47086 * 185.00262 * 4 2 1 6 6 C 1.46848 * 110.99802 * 294.21005 * 5 4 2 7 7 C 1.53035 * 109.52252 * 174.15924 * 6 5 4 8 8 C 1.53119 * 109.27796 * 59.17795 * 7 6 5 9 9 C 1.53119 * 109.16294 * 302.34568 * 8 7 6 10 10 C 1.46849 * 110.99935 * 169.99822 * 5 4 2 11 11 N 1.46497 * 109.47053 * 120.00104 * 2 1 3 12 12 C 1.34777 * 119.99942 * 275.00439 * 11 2 1 13 13 O 1.21585 * 120.00116 * 359.97438 * 12 11 2 14 14 N 1.34785 * 120.00172 * 180.02562 * 12 11 2 15 15 C 1.46495 * 120.00112 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47059 * 178.27846 * 15 14 12 17 17 C 1.50701 * 115.54903 * 65.14683 * 16 15 14 18 18 H 1.07999 * 119.99678 * 265.39860 * 17 16 15 19 19 C 1.37872 * 119.99929 * 85.40351 * 17 16 15 20 20 N 1.31513 * 120.00256 * 353.55613 * 19 17 16 21 21 Si 1.86807 * 119.99858 * 173.55185 * 19 17 16 22 22 H 1.48507 * 109.47015 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46951 * 119.99747 * 21 19 17 24 24 H 1.48488 * 109.47368 * 239.99942 * 21 19 17 25 25 C 1.53002 * 117.50199 * 279.47049 * 16 15 14 26 26 C 1.53006 * 117.49775 * 210.81431 * 16 15 14 27 27 H 1.09005 * 109.47053 * 60.00099 * 1 2 3 28 28 H 1.09000 * 109.47316 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47178 * 300.00309 * 1 2 3 30 30 H 1.09001 * 109.47597 * 65.00548 * 4 2 1 31 31 H 1.09004 * 109.47388 * 305.00063 * 4 2 1 32 32 H 1.08997 * 109.46180 * 294.17480 * 6 5 4 33 33 H 1.08996 * 109.45860 * 54.14330 * 6 5 4 34 34 H 1.09004 * 109.50459 * 299.24394 * 7 6 5 35 35 H 1.08997 * 109.53889 * 179.14141 * 7 6 5 36 36 H 1.09004 * 109.52663 * 182.43921 * 8 7 6 37 37 H 1.09006 * 109.57567 * 62.27985 * 8 7 6 38 38 H 1.08996 * 109.50408 * 297.71256 * 9 8 7 39 39 H 1.08998 * 109.50684 * 177.59049 * 9 8 7 40 40 H 1.08992 * 109.46156 * 305.85726 * 10 5 4 41 41 H 1.08999 * 109.46168 * 65.82689 * 10 5 4 42 42 H 0.97002 * 120.00564 * 94.99239 * 11 2 1 43 43 H 0.96999 * 119.99591 * 359.97438 * 14 12 11 44 44 H 1.09002 * 109.47539 * 298.28541 * 15 14 12 45 45 H 1.09008 * 109.46632 * 58.27885 * 15 14 12 46 46 H 0.97008 * 119.99870 * 185.06254 * 20 19 17 47 47 H 1.09000 * 117.49593 * 0.02562 * 25 16 15 48 48 H 1.09002 * 117.49723 * 145.01774 * 25 16 15 49 49 H 1.09005 * 117.49320 * 214.98288 * 26 16 15 50 50 H 1.08998 * 117.50192 * 359.97396 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5041 -0.8267 -1.1903 6 6 4.1306 0.4992 -1.2658 7 6 5.6405 0.3641 -1.0559 8 6 6.2202 -0.5570 -2.1329 9 6 5.5169 -1.9154 -2.0643 10 6 4.0106 -1.7142 -2.2450 11 7 2.0183 -0.6906 1.1961 12 6 2.1469 -0.0183 2.3571 13 8 1.8581 1.1615 2.4117 14 7 2.5967 -0.6535 3.4575 15 6 2.7370 0.0774 4.7193 16 6 3.2210 -0.8786 5.8114 17 6 4.6027 -1.4464 5.6126 18 1 4.7281 -2.4076 5.1366 19 6 5.7066 -0.7386 6.0385 20 7 5.5653 0.4840 6.5019 21 14 7.4031 -1.5165 5.9575 22 1 7.2923 -2.8889 5.4009 23 1 8.2817 -0.6980 5.0837 24 1 7.9839 -1.5809 7.3226 25 6 2.1769 -1.7774 6.4771 26 6 2.7730 -0.5962 7.2469 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7517 -0.1583 -2.1370 31 1 1.6054 -1.7199 -1.2951 32 1 3.9379 0.9368 -2.2453 33 1 3.7125 1.1429 -0.4919 34 1 5.8344 -0.0608 -0.0709 35 1 6.1078 1.3463 -1.1269 36 1 7.2883 -0.6908 -1.9616 37 1 6.0617 -0.1141 -3.1162 38 1 5.7089 -2.3760 -1.0953 39 1 5.8952 -2.5615 -2.8564 40 1 3.5053 -2.6779 -2.1823 41 1 3.8184 -1.2662 -3.2199 42 1 2.2489 -1.6318 1.1527 43 1 2.8274 -1.5947 3.4139 44 1 3.4610 0.8826 4.5943 45 1 1.7725 0.4972 5.0052 46 1 6.3479 1.0087 6.7326 47 1 1.1453 -1.6878 6.1367 48 1 2.4895 -2.7792 6.7715 49 1 3.4777 -0.8214 8.0475 50 1 2.1339 0.2709 7.4133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430185721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:23 Heat of formation + Delta-G solvation = -18.445365 kcal Electronic energy + Delta-G solvation = -26882.025681 eV Core-core repulsion = 23330.202044 eV Total energy + Delta-G solvation = -3551.823637 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.71182 -38.78418 -36.79989 -35.60006 -33.13510 -32.85952 -31.91550 -30.91471 -30.27824 -26.47647 -26.05353 -24.98785 -23.43402 -22.97466 -21.23165 -20.82279 -20.06027 -19.68701 -19.28434 -17.61543 -16.41671 -16.10711 -15.79722 -14.95613 -14.75962 -14.64200 -14.46411 -14.43671 -13.93341 -13.82187 -13.60298 -13.48255 -13.14457 -12.84410 -12.52425 -12.48407 -12.26557 -11.97152 -11.78026 -11.58186 -11.46879 -11.26491 -11.01764 -10.98380 -10.85034 -10.77822 -10.48209 -10.46421 -10.24013 -10.21451 -9.61582 -9.40172 -8.89627 -8.63672 -8.44577 -8.39236 -8.17872 -7.83130 -6.02533 -4.10369 3.28125 3.36504 3.37189 3.39384 3.75947 3.98903 4.39686 4.62619 4.71510 4.82130 4.88195 4.95606 5.15897 5.17183 5.26040 5.29951 5.34757 5.37066 5.43794 5.48042 5.48934 5.55970 5.63528 5.73163 5.77460 5.86204 5.89113 6.06716 6.09419 6.11298 6.17286 6.27188 6.35487 6.40856 6.54288 6.67990 6.75395 6.92224 6.95442 7.02161 7.09826 7.14594 7.44505 7.53262 7.55825 7.77787 7.87097 8.40483 8.84710 8.91057 9.39454 9.55999 11.05442 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.004411 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.461712 B = 6346.429947 C = 8059.946427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.167 3.833 3 H 0.084 0.916 4 C 0.047 3.953 5 N -0.530 5.530 6 C 0.056 3.944 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.117 4.117 10 C 0.058 3.942 11 N -0.733 5.733 12 C 0.700 3.300 13 O -0.611 6.611 14 N -0.721 5.721 15 C 0.184 3.816 16 C 0.029 3.971 17 C -0.496 4.496 18 H 0.060 0.940 19 C 0.074 3.926 20 N -0.875 5.875 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.211 4.211 26 C -0.148 4.148 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.028 0.972 42 H 0.395 0.605 43 H 0.395 0.605 44 H 0.068 0.932 45 H 0.032 0.968 46 H 0.260 0.740 47 H 0.065 0.935 48 H 0.077 0.923 49 H 0.083 0.917 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.633 -4.234 -17.947 19.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.060 3.940 3 H 0.102 0.898 4 C -0.081 4.081 5 N -0.255 5.255 6 C -0.072 4.072 7 C -0.156 4.156 8 C -0.158 4.158 9 C -0.155 4.155 10 C -0.070 4.070 11 N -0.389 5.389 12 C 0.400 3.600 13 O -0.491 6.491 14 N -0.373 5.373 15 C 0.060 3.940 16 C 0.028 3.972 17 C -0.534 4.534 18 H 0.078 0.922 19 C -0.130 4.130 20 N -0.511 5.511 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.248 4.248 26 C -0.187 4.187 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.046 0.954 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.091 0.909 41 H 0.046 0.954 42 H 0.229 0.771 43 H 0.228 0.772 44 H 0.086 0.914 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.083 0.917 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.653 -3.196 -17.276 18.175 hybrid contribution 1.024 -0.793 -0.813 1.529 sum -3.629 -3.990 -18.089 18.876 Atomic orbital electron populations 1.22188 0.95723 1.01860 1.02402 1.20639 0.92936 0.97177 0.83221 0.89832 1.22441 0.88019 1.01023 0.96625 1.61844 1.04557 1.12040 1.47061 1.22118 0.95183 0.89984 0.99872 1.21574 0.94371 0.99547 1.00112 1.21569 0.99702 0.95808 0.98684 1.21580 0.94141 0.97248 1.02531 1.22067 0.96031 0.96844 0.92080 1.44879 1.72250 1.13525 1.08237 1.16031 0.78539 0.84999 0.80428 1.90845 1.58653 1.14663 1.84937 1.45104 1.68971 1.13970 1.09292 1.20786 0.97785 0.94363 0.81025 1.19055 0.92957 0.95361 0.89826 1.20359 0.88592 1.04598 1.39825 0.92230 1.24969 0.98828 0.94877 0.94308 1.69991 1.29592 1.08581 1.42929 0.86603 0.84575 0.79567 0.77632 1.19754 1.21088 1.21030 1.23008 0.97111 0.95671 1.08998 1.22486 1.01959 0.96763 0.97463 0.92314 0.92670 0.91546 0.93782 0.90323 0.95418 0.90110 0.90585 0.91711 0.91932 0.92700 0.90777 0.91883 0.90922 0.95370 0.77146 0.77193 0.91399 0.94978 0.92974 0.91694 0.90472 0.89892 0.91707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 9.48 37.16 0.35 -1.48 16 2 C 0.17 2.09 2.35 -67.93 -0.16 1.93 16 3 H 0.08 1.25 6.10 -51.93 -0.32 0.93 16 4 C 0.05 0.47 4.52 -3.82 -0.02 0.45 16 5 N -0.53 -5.83 4.38 -234.67 -1.03 -6.85 16 6 C 0.06 0.66 5.29 -3.83 -0.02 0.64 16 7 C -0.12 -1.39 6.09 -26.65 -0.16 -1.55 16 8 C -0.12 -1.18 6.00 -26.61 -0.16 -1.34 16 9 C -0.12 -1.11 6.09 -26.65 -0.16 -1.27 16 10 C 0.06 0.54 5.46 -3.83 -0.02 0.52 16 11 N -0.73 -10.70 4.80 -58.68 -0.28 -10.98 16 12 C 0.70 13.64 8.53 -86.91 -0.74 12.90 16 13 O -0.61 -14.21 16.01 5.29 0.08 -14.12 16 14 N -0.72 -14.50 5.48 -65.23 -0.36 -14.86 16 15 C 0.18 4.31 5.50 -4.05 -0.02 4.29 16 16 C 0.03 0.69 1.38 -155.66 -0.21 0.47 16 17 C -0.50 -12.89 8.63 -34.44 -0.30 -13.19 16 18 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 19 C 0.07 1.99 5.39 -17.82 -0.10 1.89 16 20 N -0.87 -24.60 12.91 55.43 0.72 -23.88 16 21 Si 0.89 20.81 29.55 -169.99 -5.02 15.78 16 22 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C -0.21 -4.44 9.96 -26.69 -0.27 -4.71 16 26 C -0.15 -3.44 9.42 -26.69 -0.25 -3.70 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 31 H 0.08 0.68 7.99 -51.93 -0.41 0.26 16 32 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.08 1.13 6.31 -51.93 -0.33 0.80 16 34 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.61 8.01 -51.93 -0.42 0.19 16 41 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.40 5.08 8.62 -40.82 -0.35 4.73 16 43 H 0.39 7.31 8.38 -40.82 -0.34 6.97 16 44 H 0.07 1.84 8.14 -51.93 -0.42 1.41 16 45 H 0.03 0.75 8.09 -51.92 -0.42 0.33 16 46 H 0.26 7.04 8.32 -40.82 -0.34 6.70 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 49 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 50 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 396.59 15.07 5.98 5.98 Total: -1.00 -29.89 396.59 -11.47 -41.36 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -9.32 Total: 11.71 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.24 Total: -4.14 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.95 Total: -56.57 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.08 Total: -14.12 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.89 -11.47 -41.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430185721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.916 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds