Wall clock time and date at job start Tue Mar 31 2020 09:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47316 * 2 1 4 4 C 1.52997 * 109.47083 * 239.99891 * 2 1 3 5 5 N 1.46908 * 109.47086 * 185.00262 * 4 2 1 6 6 C 1.46848 * 110.99802 * 294.21005 * 5 4 2 7 7 C 1.53035 * 109.52252 * 174.15924 * 6 5 4 8 8 C 1.53119 * 109.27796 * 59.17795 * 7 6 5 9 9 C 1.53119 * 109.16294 * 302.34568 * 8 7 6 10 10 C 1.46849 * 110.99935 * 169.99822 * 5 4 2 11 11 N 1.46497 * 109.47053 * 120.00104 * 2 1 3 12 12 C 1.34777 * 119.99942 * 275.00439 * 11 2 1 13 13 O 1.21585 * 120.00116 * 359.97438 * 12 11 2 14 14 N 1.34785 * 120.00172 * 180.02562 * 12 11 2 15 15 C 1.46495 * 120.00112 * 179.97438 * 14 12 11 16 16 C 1.52994 * 109.47059 * 178.27846 * 15 14 12 17 17 C 1.50701 * 115.54903 * 65.14683 * 16 15 14 18 18 H 1.07999 * 119.99678 * 265.39860 * 17 16 15 19 19 C 1.37872 * 119.99929 * 85.40351 * 17 16 15 20 20 N 1.31513 * 120.00256 * 353.55613 * 19 17 16 21 21 Si 1.86807 * 119.99858 * 173.55185 * 19 17 16 22 22 H 1.48507 * 109.47015 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.46951 * 119.99747 * 21 19 17 24 24 H 1.48488 * 109.47368 * 239.99942 * 21 19 17 25 25 C 1.53002 * 117.50199 * 279.47049 * 16 15 14 26 26 C 1.53006 * 117.49775 * 210.81431 * 16 15 14 27 27 H 1.09005 * 109.47053 * 60.00099 * 1 2 3 28 28 H 1.09000 * 109.47316 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47178 * 300.00309 * 1 2 3 30 30 H 1.09001 * 109.47597 * 65.00548 * 4 2 1 31 31 H 1.09004 * 109.47388 * 305.00063 * 4 2 1 32 32 H 1.08997 * 109.46180 * 294.17480 * 6 5 4 33 33 H 1.08996 * 109.45860 * 54.14330 * 6 5 4 34 34 H 1.09004 * 109.50459 * 299.24394 * 7 6 5 35 35 H 1.08997 * 109.53889 * 179.14141 * 7 6 5 36 36 H 1.09004 * 109.52663 * 182.43921 * 8 7 6 37 37 H 1.09006 * 109.57567 * 62.27985 * 8 7 6 38 38 H 1.08996 * 109.50408 * 297.71256 * 9 8 7 39 39 H 1.08998 * 109.50684 * 177.59049 * 9 8 7 40 40 H 1.08992 * 109.46156 * 305.85726 * 10 5 4 41 41 H 1.08999 * 109.46168 * 65.82689 * 10 5 4 42 42 H 0.97002 * 120.00564 * 94.99239 * 11 2 1 43 43 H 0.96999 * 119.99591 * 359.97438 * 14 12 11 44 44 H 1.09002 * 109.47539 * 298.28541 * 15 14 12 45 45 H 1.09008 * 109.46632 * 58.27885 * 15 14 12 46 46 H 0.97008 * 119.99870 * 185.06254 * 20 19 17 47 47 H 1.09000 * 117.49593 * 0.02562 * 25 16 15 48 48 H 1.09002 * 117.49723 * 145.01774 * 25 16 15 49 49 H 1.09005 * 117.49320 * 214.98288 * 26 16 15 50 50 H 1.08998 * 117.50192 * 359.97396 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5041 -0.8267 -1.1903 6 6 4.1306 0.4992 -1.2658 7 6 5.6405 0.3641 -1.0559 8 6 6.2202 -0.5570 -2.1329 9 6 5.5169 -1.9154 -2.0643 10 6 4.0106 -1.7142 -2.2450 11 7 2.0183 -0.6906 1.1961 12 6 2.1469 -0.0183 2.3571 13 8 1.8581 1.1615 2.4117 14 7 2.5967 -0.6535 3.4575 15 6 2.7370 0.0774 4.7193 16 6 3.2210 -0.8786 5.8114 17 6 4.6027 -1.4464 5.6126 18 1 4.7281 -2.4076 5.1366 19 6 5.7066 -0.7386 6.0385 20 7 5.5653 0.4840 6.5019 21 14 7.4031 -1.5165 5.9575 22 1 7.2923 -2.8889 5.4009 23 1 8.2817 -0.6980 5.0837 24 1 7.9839 -1.5809 7.3226 25 6 2.1769 -1.7774 6.4771 26 6 2.7730 -0.5962 7.2469 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.7517 -0.1583 -2.1370 31 1 1.6054 -1.7199 -1.2951 32 1 3.9379 0.9368 -2.2453 33 1 3.7125 1.1429 -0.4919 34 1 5.8344 -0.0608 -0.0709 35 1 6.1078 1.3463 -1.1269 36 1 7.2883 -0.6908 -1.9616 37 1 6.0617 -0.1141 -3.1162 38 1 5.7089 -2.3760 -1.0953 39 1 5.8952 -2.5615 -2.8564 40 1 3.5053 -2.6779 -2.1823 41 1 3.8184 -1.2662 -3.2199 42 1 2.2489 -1.6318 1.1527 43 1 2.8274 -1.5947 3.4139 44 1 3.4610 0.8826 4.5943 45 1 1.7725 0.4972 5.0052 46 1 6.3479 1.0087 6.7326 47 1 1.1453 -1.6878 6.1367 48 1 2.4895 -2.7792 6.7715 49 1 3.4777 -0.8214 8.0475 50 1 2.1339 0.2709 7.4133 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430185721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:26:22 Heat of formation + Delta-G solvation = -37.735073 kcal Electronic energy + Delta-G solvation = -26882.862145 eV Core-core repulsion = 23330.202044 eV Total energy + Delta-G solvation = -3552.660101 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.03658 -39.88971 -38.54734 -36.79953 -34.85907 -33.98417 -33.83582 -31.77337 -31.42819 -27.95827 -27.31153 -26.86688 -24.34708 -23.81367 -22.97032 -22.10519 -21.39343 -21.13898 -20.56837 -19.19449 -18.02792 -17.26930 -17.07479 -16.65934 -16.21755 -15.92425 -15.78062 -15.45441 -15.30454 -15.12552 -14.95756 -14.44810 -14.39408 -14.28898 -13.80670 -13.64773 -13.41681 -13.33011 -13.12709 -12.91630 -12.82944 -12.76605 -12.60775 -12.32228 -12.12551 -12.02266 -11.93818 -11.62639 -11.46385 -11.25983 -11.15383 -11.12006 -10.82616 -10.44458 -10.14533 -9.99996 -9.46073 -9.20409 -8.07615 -6.20042 1.41155 1.44431 1.53901 1.96329 2.40370 2.43849 2.91932 3.20798 3.41945 3.70877 3.76517 3.89191 3.97538 4.07860 4.25768 4.28502 4.32158 4.38815 4.47566 4.56911 4.59563 4.64822 4.68748 4.70354 4.75835 4.77504 4.81470 4.84012 4.94336 5.00969 5.03179 5.04999 5.07371 5.14797 5.23040 5.29481 5.30838 5.34525 5.48105 5.62583 5.64216 5.74975 5.79587 5.84624 6.16114 6.23563 6.30651 6.40014 6.86878 7.38488 7.49014 7.83841 9.00304 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.011494 B = 0.004411 C = 0.003473 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2435.461712 B = 6346.429947 C = 8059.946427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.163 3.837 3 H 0.054 0.946 4 C 0.056 3.944 5 N -0.547 5.547 6 C 0.061 3.939 7 C -0.119 4.119 8 C -0.116 4.116 9 C -0.116 4.116 10 C 0.059 3.941 11 N -0.712 5.712 12 C 0.697 3.303 13 O -0.652 6.652 14 N -0.717 5.717 15 C 0.203 3.797 16 C 0.006 3.994 17 C -0.498 4.498 18 H 0.063 0.937 19 C 0.024 3.976 20 N -0.909 5.909 21 Si 0.948 3.052 22 H -0.261 1.261 23 H -0.289 1.289 24 H -0.284 1.284 25 C -0.174 4.174 26 C -0.159 4.159 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.042 0.958 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.040 0.960 42 H 0.407 0.593 43 H 0.404 0.596 44 H 0.021 0.979 45 H 0.029 0.971 46 H 0.258 0.742 47 H 0.087 0.913 48 H 0.087 0.913 49 H 0.064 0.936 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 -6.753 -20.321 22.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.057 3.943 3 H 0.072 0.928 4 C -0.072 4.072 5 N -0.272 5.272 6 C -0.067 4.067 7 C -0.157 4.157 8 C -0.153 4.153 9 C -0.154 4.154 10 C -0.068 4.068 11 N -0.368 5.368 12 C 0.397 3.603 13 O -0.536 6.536 14 N -0.370 5.370 15 C 0.078 3.922 16 C 0.005 3.995 17 C -0.536 4.536 18 H 0.081 0.919 19 C -0.176 4.176 20 N -0.547 5.547 21 Si 0.774 3.226 22 H -0.185 1.185 23 H -0.216 1.216 24 H -0.210 1.210 25 C -0.211 4.211 26 C -0.198 4.198 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.052 0.948 30 H 0.080 0.920 31 H 0.121 0.879 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.058 0.942 42 H 0.243 0.757 43 H 0.239 0.761 44 H 0.039 0.961 45 H 0.047 0.953 46 H 0.067 0.933 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.082 0.918 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.332 -5.781 -19.695 21.207 hybrid contribution 1.205 0.012 -0.114 1.211 sum -4.127 -5.769 -19.809 21.040 Atomic orbital electron populations 1.22103 0.94276 1.02987 1.01995 1.20837 0.94019 0.95976 0.83454 0.92817 1.22400 0.87351 1.02131 0.95282 1.61814 1.05263 1.11625 1.48487 1.21973 0.94870 0.90400 0.99432 1.21556 0.94902 0.99952 0.99316 1.21545 0.99694 0.95756 0.98342 1.21587 0.94580 0.96970 1.02285 1.22121 0.95744 0.97085 0.91865 1.44763 1.70857 1.13889 1.07258 1.16201 0.78208 0.84562 0.81315 1.90816 1.60362 1.16692 1.85686 1.44885 1.69321 1.14153 1.08688 1.20316 0.96043 0.93388 0.82475 1.19062 0.93377 0.96921 0.90139 1.20655 0.89653 1.04442 1.38876 0.91913 1.25687 1.02283 0.95223 0.94397 1.70119 1.30230 1.09887 1.44457 0.85667 0.80472 0.79097 0.77352 1.18485 1.21570 1.20997 1.22989 0.97340 0.95059 1.05758 1.22428 1.02283 0.98413 0.96643 0.89912 0.90682 0.94782 0.91973 0.87923 0.94025 0.93194 0.93716 0.91753 0.91828 0.91308 0.92609 0.89810 0.89365 0.94195 0.75700 0.76081 0.96065 0.95304 0.93325 0.89417 0.89477 0.91765 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 9.48 71.98 0.68 -2.52 16 2 C 0.16 3.92 2.35 44.99 0.11 4.02 16 3 H 0.05 1.65 6.10 -2.39 -0.01 1.63 16 4 C 0.06 0.95 4.52 86.30 0.39 1.34 16 5 N -0.55 -10.98 4.38 -896.35 -3.93 -14.91 16 6 C 0.06 1.42 5.29 86.32 0.46 1.88 16 7 C -0.12 -2.84 6.09 30.65 0.19 -2.65 16 8 C -0.12 -2.11 6.00 30.67 0.18 -1.93 16 9 C -0.12 -1.93 6.09 30.65 0.19 -1.75 16 10 C 0.06 0.91 5.46 86.33 0.47 1.38 16 11 N -0.71 -20.34 4.80 -457.82 -2.20 -22.54 16 12 C 0.70 27.66 8.53 179.05 1.53 29.19 16 13 O -0.65 -31.60 16.01 -3.98 -0.06 -31.67 16 14 N -0.72 -29.12 5.48 -478.53 -2.62 -31.75 16 15 C 0.20 9.77 5.50 86.38 0.48 10.25 16 16 C 0.01 0.28 1.38 -52.93 -0.07 0.20 16 17 C -0.50 -25.91 8.63 25.60 0.22 -25.69 16 18 H 0.06 3.16 7.82 -2.91 -0.02 3.13 16 19 C 0.02 1.33 5.39 84.65 0.46 1.78 16 20 N -0.91 -52.63 12.91 21.45 0.28 -52.36 16 21 Si 0.95 43.07 29.55 68.60 2.03 45.10 16 22 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.56 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 C -0.17 -7.05 9.96 30.62 0.30 -6.75 16 26 C -0.16 -7.42 9.42 30.62 0.29 -7.13 16 27 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.06 0.88 8.12 -2.39 -0.02 0.86 16 31 H 0.10 1.30 7.99 -2.38 -0.02 1.28 16 32 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 1.46 6.31 -2.39 -0.02 1.45 16 34 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.09 1.12 8.01 -2.39 -0.02 1.10 16 41 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.41 9.76 8.62 -92.71 -0.80 8.96 16 43 H 0.40 14.71 8.38 -92.71 -0.78 13.93 16 44 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.03 1.38 8.09 -2.38 -0.02 1.36 16 46 H 0.26 14.39 8.32 -92.70 -0.77 13.62 16 47 H 0.09 3.17 8.14 -2.39 -0.02 3.15 16 48 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 49 H 0.06 3.20 8.14 -2.38 -0.02 3.18 16 50 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 Total: -1.00 -67.18 396.59 -1.31 -68.49 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.67 Total: 37.99 kcal Atomic # 6 Polarization: -4.23 SS G_CDS: 5.86 Total: 1.64 kcal Atomic # 7 Polarization: -113.08 SS G_CDS: -8.47 Total: -121.55 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.06 Total: -31.67 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -67.18 -1.31 -68.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430185721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.758 kcal (2) G-P(sol) polarization free energy of solvation -67.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds