Wall clock time and date at job start Tue Mar 31 2020 10:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46907 * 111.00432 * 2 1 4 4 C 1.46895 * 111.00141 * 123.95521 * 2 1 3 5 5 H 1.09003 * 109.47430 * 299.99906 * 4 2 1 6 6 C 1.53002 * 109.47191 * 59.99959 * 4 2 1 7 7 C 1.52994 * 109.47409 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47413 * 300.00155 * 7 6 4 9 9 C 1.53002 * 109.46960 * 59.99570 * 8 7 6 10 10 H 1.08995 * 109.47236 * 60.00789 * 9 8 7 11 11 N 1.46496 * 109.46807 * 180.02562 * 9 8 7 12 12 C 1.34775 * 120.00250 * 275.00006 * 11 9 8 13 13 O 1.21596 * 119.99700 * 0.02562 * 12 11 9 14 14 N 1.34779 * 120.00618 * 180.02562 * 12 11 9 15 15 C 1.46502 * 120.00396 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47026 * 182.49525 * 15 14 12 17 17 C 1.50701 * 115.54984 * 65.17138 * 16 15 14 18 18 H 1.08000 * 119.99607 * 265.14663 * 17 16 15 19 19 C 1.37875 * 120.00107 * 85.14949 * 17 16 15 20 20 N 1.31518 * 120.00124 * 353.23707 * 19 17 16 21 21 Si 1.86798 * 119.99855 * 173.24216 * 19 17 16 22 22 H 1.48495 * 109.47292 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46952 * 119.99805 * 21 19 17 24 24 H 1.48498 * 109.47112 * 239.99362 * 21 19 17 25 25 C 1.52996 * 117.50070 * 279.49915 * 16 15 14 26 26 C 1.53004 * 117.50081 * 210.83796 * 16 15 14 27 27 C 1.52999 * 109.47403 * 300.00106 * 9 8 7 28 28 H 1.09001 * 109.47425 * 296.04616 * 1 2 3 29 29 H 1.09005 * 109.47393 * 56.04206 * 1 2 3 30 30 H 1.08998 * 109.47476 * 176.04165 * 1 2 3 31 31 H 1.08999 * 109.47514 * 183.95408 * 3 2 1 32 32 H 1.09004 * 109.46965 * 303.95885 * 3 2 1 33 33 H 1.09007 * 109.46601 * 63.94952 * 3 2 1 34 34 H 1.09003 * 109.46977 * 59.99669 * 6 4 2 35 35 H 1.08997 * 109.46725 * 300.00063 * 6 4 2 36 36 H 1.08998 * 109.47514 * 180.02562 * 7 6 4 37 37 H 1.09003 * 109.47368 * 59.99851 * 7 6 4 38 38 H 1.09003 * 109.46605 * 300.00163 * 8 7 6 39 39 H 1.08998 * 109.47545 * 180.02562 * 8 7 6 40 40 H 0.97005 * 120.00570 * 95.00193 * 11 9 8 41 41 H 0.97005 * 119.99619 * 359.97438 * 14 12 11 42 42 H 1.09000 * 109.46689 * 62.49432 * 15 14 12 43 43 H 1.09002 * 109.47096 * 302.49916 * 15 14 12 44 44 H 0.96996 * 120.00327 * 185.03997 * 20 19 17 45 45 H 1.09001 * 117.50109 * 0.02562 * 25 16 15 46 46 H 1.09005 * 117.50150 * 145.02196 * 25 16 15 47 47 H 1.08994 * 117.50210 * 214.98061 * 26 16 15 48 48 H 1.09003 * 117.49423 * 359.97438 * 26 16 15 49 49 H 1.08998 * 109.47509 * 179.97438 * 27 9 8 50 50 H 1.08995 * 109.47482 * 300.00532 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 1.6459 -0.3201 2.0688 6 6 1.5048 -2.2125 1.0491 7 6 2.0526 -3.0102 2.2342 8 6 3.5821 -2.9875 2.2010 9 6 4.0727 -1.5409 2.2894 10 1 3.7229 -1.0949 3.2204 11 7 5.5371 -1.5191 2.2571 12 6 6.2389 -1.6906 3.3948 13 8 5.6566 -1.8638 4.4481 14 7 7.5863 -1.6700 3.3652 15 6 8.3491 -1.8569 4.6019 16 6 9.8441 -1.7285 4.3032 17 6 10.3010 -0.3671 3.8461 18 1 10.3830 -0.1511 2.7911 19 6 10.6142 0.6027 4.7747 20 7 10.3888 0.3871 6.0524 21 14 11.3587 2.2230 4.2181 22 1 11.5114 2.2162 2.7411 23 1 10.4671 3.3410 4.6189 24 1 12.6898 2.3999 4.8521 25 6 10.5534 -2.9475 3.7102 26 6 10.8095 -2.5451 5.1647 27 6 3.5249 -0.7432 1.1043 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5741 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.8543 -2.6584 0.1179 35 1 0.4152 -2.2287 1.0733 36 1 1.7035 -4.0408 2.1710 37 1 1.7028 -2.5642 3.1652 38 1 3.9319 -3.4335 1.2700 39 1 3.9724 -3.5561 3.0451 40 1 6.0018 -1.3813 1.4168 41 1 8.0508 -1.5322 2.5249 42 1 8.1437 -2.8468 5.0093 43 1 8.0569 -1.0977 5.3273 44 1 10.5404 1.0950 6.6979 45 1 9.9549 -3.8410 3.5325 46 1 11.3507 -2.7649 2.9898 47 1 11.7750 -2.0979 5.4006 48 1 10.3794 -3.1735 5.9446 49 1 3.8740 0.2874 1.1675 50 1 3.8747 -1.1893 0.1733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430843905.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:39 Heat of formation + Delta-G solvation = -14.802953 kcal Electronic energy + Delta-G solvation = -26302.499009 eV Core-core repulsion = 22750.833319 eV Total energy + Delta-G solvation = -3551.665690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.03968 -38.86288 -36.85053 -36.02279 -33.57827 -33.10978 -31.95419 -30.35019 -29.30011 -27.63321 -26.03784 -25.00597 -24.35102 -22.24150 -21.36326 -21.08440 -20.24171 -19.78052 -19.32417 -17.65463 -16.77678 -16.03503 -15.36404 -15.25748 -15.01274 -14.88629 -14.60979 -14.51651 -14.03090 -13.96728 -13.82155 -13.53673 -13.16800 -12.85594 -12.71893 -12.60988 -12.19703 -11.94553 -11.74986 -11.64023 -11.55438 -11.49388 -11.27092 -11.01785 -10.89015 -10.73079 -10.53307 -10.50735 -10.39530 -10.25773 -9.68220 -9.46795 -8.94865 -8.77052 -8.61476 -8.48549 -8.24044 -7.93117 -6.06421 -4.14644 3.19647 3.25317 3.34308 3.36290 3.65599 3.85276 4.36048 4.52190 4.60887 4.76203 4.87814 4.97936 5.00704 5.11398 5.13889 5.21884 5.23445 5.27240 5.34048 5.37134 5.37702 5.42734 5.46491 5.59388 5.70708 5.77224 5.87467 5.94296 6.01446 6.05923 6.06302 6.26121 6.31377 6.36228 6.49593 6.61519 6.70878 6.75301 6.79530 6.88018 6.90298 7.10157 7.37410 7.44288 7.51043 7.64807 7.83079 8.35925 8.71924 8.86141 9.26895 9.51850 11.01487 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.003019 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.827391 B = 9272.379620 C =10383.339472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.543 5.543 3 C 0.018 3.982 4 C 0.089 3.911 5 H 0.044 0.956 6 C -0.113 4.113 7 C -0.115 4.115 8 C -0.130 4.130 9 C 0.170 3.830 10 H 0.084 0.916 11 N -0.750 5.750 12 C 0.699 3.301 13 O -0.603 6.603 14 N -0.721 5.721 15 C 0.183 3.817 16 C 0.028 3.972 17 C -0.499 4.499 18 H 0.060 0.940 19 C 0.073 3.927 20 N -0.874 5.874 21 Si 0.890 3.110 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 C -0.211 4.211 26 C -0.148 4.148 27 C -0.121 4.121 28 H 0.024 0.976 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.026 0.974 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.392 0.608 41 H 0.395 0.605 42 H 0.032 0.968 43 H 0.071 0.929 44 H 0.261 0.739 45 H 0.065 0.935 46 H 0.077 0.923 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.071 0.929 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.127 -3.019 -12.290 21.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.267 5.267 3 C -0.130 4.130 4 C -0.020 4.020 5 H 0.062 0.938 6 C -0.150 4.150 7 C -0.154 4.154 8 C -0.169 4.169 9 C 0.063 3.937 10 H 0.102 0.898 11 N -0.405 5.405 12 C 0.399 3.601 13 O -0.483 6.483 14 N -0.373 5.373 15 C 0.059 3.941 16 C 0.028 3.972 17 C -0.536 4.536 18 H 0.078 0.922 19 C -0.131 4.131 20 N -0.510 5.510 21 Si 0.717 3.283 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.248 4.248 26 C -0.187 4.187 27 C -0.159 4.159 28 H 0.043 0.957 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.226 0.774 41 H 0.228 0.772 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.101 0.899 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.390 -3.327 -11.508 21.116 hybrid contribution 0.606 1.551 -0.186 1.676 sum -16.784 -1.776 -11.694 20.533 Atomic orbital electron populations 1.22431 0.87519 1.02378 1.00373 1.62018 1.07730 1.13783 1.43161 1.22469 1.01448 0.88637 1.00414 1.21590 0.94462 0.94377 0.91557 0.93841 1.21652 1.00086 0.93950 0.99349 1.21474 0.95515 1.00132 0.98254 1.21973 0.95136 0.97284 1.02539 1.20599 0.79045 0.95154 0.98865 0.89793 1.45149 1.06155 1.79900 1.09333 1.16048 0.82222 0.78172 0.83703 1.90865 1.69720 1.58055 1.29644 1.45138 1.03418 1.76049 1.12667 1.20831 0.90565 0.98527 0.84179 1.19048 0.88286 0.90792 0.99114 1.20368 1.45525 0.95191 0.92559 0.92209 1.24986 0.94918 0.98330 0.94836 1.69985 1.47305 1.32686 1.01015 0.86584 0.79097 0.83727 0.78858 1.19746 1.21082 1.20966 1.23019 1.04656 0.99751 0.97390 1.22493 1.01932 1.03077 0.91159 1.21902 0.94336 1.00890 0.98802 0.95713 0.91515 0.90987 0.90700 0.91497 0.95587 0.90961 0.91924 0.91532 0.91825 0.91890 0.91109 0.77436 0.77221 0.94999 0.91075 0.92916 0.91641 0.90415 0.89853 0.91652 0.91081 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.21 60.06 0.55 0.71 16 2 N -0.54 -4.89 4.89 -243.17 -1.19 -6.08 16 3 C 0.02 0.15 9.11 60.07 0.55 0.70 16 4 C 0.09 0.84 1.94 -67.71 -0.13 0.71 16 5 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 6 C -0.11 -0.96 4.97 -26.73 -0.13 -1.10 16 7 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 8 C -0.13 -1.52 5.49 -26.73 -0.15 -1.66 16 9 C 0.17 2.15 2.45 -67.93 -0.17 1.98 16 10 H 0.08 1.28 7.58 -51.93 -0.39 0.88 16 11 N -0.75 -10.74 5.08 -58.68 -0.30 -11.04 16 12 C 0.70 13.49 8.53 -86.92 -0.74 12.75 16 13 O -0.60 -14.01 16.01 5.28 0.08 -13.92 16 14 N -0.72 -14.22 5.47 -65.23 -0.36 -14.57 16 15 C 0.18 4.22 5.50 -4.04 -0.02 4.20 16 16 C 0.03 0.67 1.36 -155.66 -0.21 0.46 16 17 C -0.50 -12.88 8.68 -34.44 -0.30 -13.18 16 18 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 19 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 20 N -0.87 -24.45 12.94 55.43 0.72 -23.73 16 21 Si 0.89 20.66 29.55 -169.99 -5.02 15.63 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C -0.21 -4.38 9.96 -26.70 -0.27 -4.64 16 26 C -0.15 -3.40 9.44 -26.69 -0.25 -3.65 16 27 C -0.12 -1.22 4.31 -26.73 -0.12 -1.34 16 28 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.07 0.44 8.12 -51.93 -0.42 0.01 16 30 H 0.07 0.49 6.30 -51.93 -0.33 0.16 16 31 H 0.07 0.64 6.24 -51.93 -0.32 0.31 16 32 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 33 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.48 6.40 -51.93 -0.33 0.15 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.39 4.61 8.62 -40.82 -0.35 4.26 16 41 H 0.39 7.02 8.44 -40.82 -0.34 6.68 16 42 H 0.03 0.73 8.09 -51.93 -0.42 0.31 16 43 H 0.07 1.91 8.14 -51.93 -0.42 1.49 16 44 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 47 H 0.08 2.03 8.14 -51.93 -0.42 1.60 16 48 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 49 H 0.07 0.74 6.35 -51.93 -0.33 0.41 16 50 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 391.90 15.07 5.91 5.91 Total: -1.00 -30.17 391.90 -10.93 -41.10 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: -9.13 Total: 10.15 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: -1.64 Total: -3.44 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -1.13 Total: -55.42 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.08 Total: -13.92 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.17 -10.93 -41.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430843905.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.298 kcal (2) G-P(sol) polarization free energy of solvation -30.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds