Wall clock time and date at job start Tue Mar 31 2020 10:02:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46907 * 111.00432 * 2 1 4 4 C 1.46895 * 111.00141 * 123.95521 * 2 1 3 5 5 H 1.09003 * 109.47430 * 299.99906 * 4 2 1 6 6 C 1.53002 * 109.47191 * 59.99959 * 4 2 1 7 7 C 1.52994 * 109.47409 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47413 * 300.00155 * 7 6 4 9 9 C 1.53002 * 109.46960 * 59.99570 * 8 7 6 10 10 H 1.08995 * 109.47236 * 60.00789 * 9 8 7 11 11 N 1.46496 * 109.46807 * 180.02562 * 9 8 7 12 12 C 1.34775 * 120.00250 * 275.00006 * 11 9 8 13 13 O 1.21596 * 119.99700 * 0.02562 * 12 11 9 14 14 N 1.34779 * 120.00618 * 180.02562 * 12 11 9 15 15 C 1.46502 * 120.00396 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47026 * 182.49525 * 15 14 12 17 17 C 1.50701 * 115.54984 * 65.17138 * 16 15 14 18 18 H 1.08000 * 119.99607 * 265.14663 * 17 16 15 19 19 C 1.37875 * 120.00107 * 85.14949 * 17 16 15 20 20 N 1.31518 * 120.00124 * 353.23707 * 19 17 16 21 21 Si 1.86798 * 119.99855 * 173.24216 * 19 17 16 22 22 H 1.48495 * 109.47292 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.46952 * 119.99805 * 21 19 17 24 24 H 1.48498 * 109.47112 * 239.99362 * 21 19 17 25 25 C 1.52996 * 117.50070 * 279.49915 * 16 15 14 26 26 C 1.53004 * 117.50081 * 210.83796 * 16 15 14 27 27 C 1.52999 * 109.47403 * 300.00106 * 9 8 7 28 28 H 1.09001 * 109.47425 * 296.04616 * 1 2 3 29 29 H 1.09005 * 109.47393 * 56.04206 * 1 2 3 30 30 H 1.08998 * 109.47476 * 176.04165 * 1 2 3 31 31 H 1.08999 * 109.47514 * 183.95408 * 3 2 1 32 32 H 1.09004 * 109.46965 * 303.95885 * 3 2 1 33 33 H 1.09007 * 109.46601 * 63.94952 * 3 2 1 34 34 H 1.09003 * 109.46977 * 59.99669 * 6 4 2 35 35 H 1.08997 * 109.46725 * 300.00063 * 6 4 2 36 36 H 1.08998 * 109.47514 * 180.02562 * 7 6 4 37 37 H 1.09003 * 109.47368 * 59.99851 * 7 6 4 38 38 H 1.09003 * 109.46605 * 300.00163 * 8 7 6 39 39 H 1.08998 * 109.47545 * 180.02562 * 8 7 6 40 40 H 0.97005 * 120.00570 * 95.00193 * 11 9 8 41 41 H 0.97005 * 119.99619 * 359.97438 * 14 12 11 42 42 H 1.09000 * 109.46689 * 62.49432 * 15 14 12 43 43 H 1.09002 * 109.47096 * 302.49916 * 15 14 12 44 44 H 0.96996 * 120.00327 * 185.03997 * 20 19 17 45 45 H 1.09001 * 117.50109 * 0.02562 * 25 16 15 46 46 H 1.09005 * 117.50150 * 145.02196 * 25 16 15 47 47 H 1.08994 * 117.50210 * 214.98061 * 26 16 15 48 48 H 1.09003 * 117.49423 * 359.97438 * 26 16 15 49 49 H 1.08998 * 109.47509 * 179.97438 * 27 9 8 50 50 H 1.08995 * 109.47482 * 300.00532 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 1.6459 -0.3201 2.0688 6 6 1.5048 -2.2125 1.0491 7 6 2.0526 -3.0102 2.2342 8 6 3.5821 -2.9875 2.2010 9 6 4.0727 -1.5409 2.2894 10 1 3.7229 -1.0949 3.2204 11 7 5.5371 -1.5191 2.2571 12 6 6.2389 -1.6906 3.3948 13 8 5.6566 -1.8638 4.4481 14 7 7.5863 -1.6700 3.3652 15 6 8.3491 -1.8569 4.6019 16 6 9.8441 -1.7285 4.3032 17 6 10.3010 -0.3671 3.8461 18 1 10.3830 -0.1511 2.7911 19 6 10.6142 0.6027 4.7747 20 7 10.3888 0.3871 6.0524 21 14 11.3587 2.2230 4.2181 22 1 11.5114 2.2162 2.7411 23 1 10.4671 3.3410 4.6189 24 1 12.6898 2.3999 4.8521 25 6 10.5534 -2.9475 3.7102 26 6 10.8095 -2.5451 5.1647 27 6 3.5249 -0.7432 1.1043 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5741 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 3.0828 1.3432 -0.0709 32 1 1.5898 1.9164 -0.8524 33 1 1.7043 1.8724 0.9233 34 1 1.8543 -2.6584 0.1179 35 1 0.4152 -2.2287 1.0733 36 1 1.7035 -4.0408 2.1710 37 1 1.7028 -2.5642 3.1652 38 1 3.9319 -3.4335 1.2700 39 1 3.9724 -3.5561 3.0451 40 1 6.0018 -1.3813 1.4168 41 1 8.0508 -1.5322 2.5249 42 1 8.1437 -2.8468 5.0093 43 1 8.0569 -1.0977 5.3273 44 1 10.5404 1.0950 6.6979 45 1 9.9549 -3.8410 3.5325 46 1 11.3507 -2.7649 2.9898 47 1 11.7750 -2.0979 5.4006 48 1 10.3794 -3.1735 5.9446 49 1 3.8740 0.2874 1.1675 50 1 3.8747 -1.1893 0.1733 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430843905.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:38 Heat of formation + Delta-G solvation = -34.849744 kcal Electronic energy + Delta-G solvation = -26303.368303 eV Core-core repulsion = 22750.833319 eV Total energy + Delta-G solvation = -3552.534984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.25981 -40.02793 -38.54016 -37.04380 -35.00916 -34.54029 -33.94565 -31.23280 -30.24201 -28.44790 -27.80656 -26.81611 -25.09351 -23.21410 -22.92666 -22.27036 -21.49727 -21.20084 -20.73526 -19.16702 -18.14294 -17.51609 -16.68543 -16.61280 -16.29500 -16.03629 -15.78438 -15.64583 -15.33719 -15.15223 -15.11968 -14.73648 -14.44341 -14.26357 -13.78406 -13.65789 -13.44744 -13.29613 -12.94902 -12.91795 -12.82105 -12.59927 -12.38720 -12.33652 -12.31031 -12.15129 -12.02733 -11.57941 -11.50228 -11.45497 -11.27755 -11.09345 -10.84477 -10.45709 -10.21832 -10.02623 -9.56190 -9.30914 -8.09059 -6.21905 1.40819 1.44379 1.53753 1.82947 2.28152 2.42787 2.92939 3.19147 3.33203 3.61633 3.74149 3.86528 3.96731 4.15025 4.26691 4.27627 4.30401 4.42726 4.45534 4.47451 4.52631 4.57917 4.62986 4.67592 4.71727 4.74668 4.75016 4.92520 4.99153 5.01210 5.02392 5.05283 5.12132 5.14240 5.17738 5.26207 5.28614 5.32957 5.45841 5.60816 5.62452 5.66300 5.74530 5.80396 6.08717 6.11794 6.20018 6.38083 6.85304 7.28075 7.47331 7.73031 8.98672 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.003019 C = 0.002696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.827391 B = 9272.379620 C =10383.339472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.017 3.983 4 C 0.090 3.910 5 H 0.030 0.970 6 C -0.105 4.105 7 C -0.110 4.110 8 C -0.125 4.125 9 C 0.168 3.832 10 H 0.053 0.947 11 N -0.730 5.730 12 C 0.696 3.304 13 O -0.646 6.646 14 N -0.715 5.715 15 C 0.201 3.799 16 C 0.006 3.994 17 C -0.502 4.502 18 H 0.064 0.936 19 C 0.023 3.977 20 N -0.909 5.909 21 Si 0.950 3.050 22 H -0.260 1.260 23 H -0.289 1.289 24 H -0.285 1.285 25 C -0.174 4.174 26 C -0.160 4.160 27 C -0.109 4.109 28 H 0.021 0.979 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.019 0.981 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.040 0.960 40 H 0.409 0.591 41 H 0.406 0.594 42 H 0.030 0.970 43 H 0.024 0.976 44 H 0.258 0.742 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.856 -3.375 -15.262 23.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.271 5.271 3 C -0.131 4.131 4 C -0.019 4.019 5 H 0.048 0.952 6 C -0.142 4.142 7 C -0.149 4.149 8 C -0.163 4.163 9 C 0.063 3.937 10 H 0.072 0.928 11 N -0.385 5.385 12 C 0.396 3.604 13 O -0.529 6.529 14 N -0.368 5.368 15 C 0.075 3.925 16 C 0.005 3.995 17 C -0.540 4.540 18 H 0.082 0.918 19 C -0.178 4.178 20 N -0.546 5.546 21 Si 0.776 3.224 22 H -0.184 1.184 23 H -0.215 1.215 24 H -0.211 1.211 25 C -0.211 4.211 26 C -0.199 4.199 27 C -0.147 4.147 28 H 0.040 0.960 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.038 0.962 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.100 0.900 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.245 0.755 41 H 0.241 0.759 42 H 0.049 0.951 43 H 0.043 0.957 44 H 0.067 0.933 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.082 0.918 48 H 0.088 0.912 49 H 0.086 0.914 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.127 -3.679 -14.562 23.540 hybrid contribution 0.784 1.648 0.727 1.964 sum -17.343 -2.030 -13.835 22.278 Atomic orbital electron populations 1.22501 0.86468 1.03166 1.00707 1.62053 1.08731 1.13908 1.42446 1.22504 1.01400 0.88573 1.00651 1.21550 0.93770 0.95199 0.91381 0.95212 1.21594 1.00889 0.92871 0.98873 1.21446 0.93752 1.01269 0.98441 1.21901 0.96739 0.95780 1.01924 1.20721 0.77771 0.96411 0.98822 0.92824 1.45004 1.06816 1.78209 1.08516 1.16214 0.82030 0.77871 0.84292 1.90838 1.70448 1.59882 1.31725 1.44904 1.03592 1.76280 1.12064 1.20372 0.90808 0.96732 0.84547 1.19052 0.88343 0.91250 1.00870 1.20694 1.44470 0.96156 0.92671 0.91774 1.25719 0.95544 1.01571 0.94925 1.70116 1.48920 1.33535 1.02051 0.85634 0.77893 0.79872 0.78983 1.18398 1.21547 1.21089 1.23005 1.03716 0.98788 0.95629 1.22439 1.00914 1.03581 0.92938 1.21792 0.94955 1.00196 0.97791 0.96010 0.90454 0.90110 0.90938 0.90257 0.96233 0.90297 0.90521 0.90004 0.92822 0.90338 0.94122 0.75484 0.75858 0.95143 0.95719 0.93301 0.89250 0.89448 0.91780 0.91166 0.91398 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.21 127.69 1.18 1.42 16 2 N -0.55 -8.69 4.89 -923.24 -4.51 -13.20 16 3 C 0.02 0.25 9.11 127.69 1.16 1.42 16 4 C 0.09 1.56 1.94 44.92 0.09 1.65 16 5 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 6 C -0.10 -1.54 4.97 30.59 0.15 -1.39 16 7 C -0.11 -1.94 5.92 30.59 0.18 -1.76 16 8 C -0.12 -2.79 5.49 30.60 0.17 -2.63 16 9 C 0.17 4.21 2.45 44.99 0.11 4.32 16 10 H 0.05 1.69 7.58 -2.39 -0.02 1.68 16 11 N -0.73 -20.39 5.08 -457.81 -2.33 -22.72 16 12 C 0.70 27.12 8.53 179.05 1.53 28.64 16 13 O -0.65 -31.06 16.01 -4.02 -0.06 -31.13 16 14 N -0.72 -28.10 5.47 -478.53 -2.62 -30.72 16 15 C 0.20 9.43 5.50 86.38 0.48 9.91 16 16 C 0.01 0.26 1.36 -52.93 -0.07 0.19 16 17 C -0.50 -25.73 8.68 25.60 0.22 -25.51 16 18 H 0.06 3.16 7.82 -2.91 -0.02 3.14 16 19 C 0.02 1.23 5.39 84.65 0.46 1.68 16 20 N -0.91 -52.07 12.94 21.45 0.28 -51.80 16 21 Si 0.95 42.49 29.55 68.60 2.03 44.52 16 22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 25 C -0.17 -6.87 9.96 30.62 0.30 -6.57 16 26 C -0.16 -7.34 9.44 30.62 0.29 -7.05 16 27 C -0.11 -2.04 4.31 30.60 0.13 -1.91 16 28 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.08 0.82 8.12 -2.38 -0.02 0.80 16 30 H 0.08 0.87 6.30 -2.39 -0.02 0.86 16 31 H 0.07 1.12 6.24 -2.39 -0.01 1.10 16 32 H 0.08 1.00 8.12 -2.39 -0.02 0.98 16 33 H 0.02 0.31 8.14 -2.38 -0.02 0.30 16 34 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.08 0.95 6.40 -2.39 -0.02 0.94 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.41 8.83 8.62 -92.70 -0.80 8.04 16 41 H 0.41 13.92 8.44 -92.70 -0.78 13.14 16 42 H 0.03 1.42 8.09 -2.39 -0.02 1.40 16 43 H 0.02 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 45 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 46 H 0.09 3.30 8.14 -2.38 -0.02 3.28 16 47 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 48 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 49 H 0.07 1.33 6.35 -2.39 -0.02 1.32 16 50 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -66.33 391.90 -1.51 -67.83 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: -0.66 Total: 34.79 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.37 Total: 2.42 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -9.18 Total: -118.44 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.06 Total: -31.13 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -66.33 -1.51 -67.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430843905.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.982 kcal (2) G-P(sol) polarization free energy of solvation -66.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds