Wall clock time and date at job start Tue Mar 31 2020 09:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.46869 * 2 1 4 4 C 1.46898 * 111.00143 * 295.35592 * 3 2 1 5 5 C 1.53695 * 109.25752 * 172.60896 * 4 3 2 6 6 H 1.09002 * 109.80123 * 294.41770 * 5 4 3 7 7 C 1.53001 * 109.70199 * 173.68823 * 5 4 3 8 8 N 1.47072 * 108.27895 * 54.08355 * 5 4 3 9 9 C 1.34781 * 120.88442 * 128.75480 * 8 5 4 10 10 O 1.21587 * 119.99559 * 5.93786 * 9 8 5 11 11 N 1.34775 * 120.00187 * 185.94670 * 9 8 5 12 12 C 1.46499 * 120.00180 * 174.51029 * 11 9 8 13 13 C 1.52996 * 109.47250 * 184.16553 * 12 11 9 14 14 C 1.50698 * 115.55089 * 306.31138 * 13 12 11 15 15 H 1.08001 * 119.99956 * 144.24819 * 14 13 12 16 16 C 1.37873 * 120.00170 * 324.24652 * 14 13 12 17 17 N 1.31515 * 119.99854 * 356.43342 * 16 14 13 18 18 Si 1.86798 * 120.00316 * 176.43172 * 16 14 13 19 19 H 1.48498 * 109.47004 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47233 * 119.99667 * 18 16 14 21 21 H 1.48502 * 109.47146 * 240.00135 * 18 16 14 22 22 C 1.53002 * 117.49761 * 160.63843 * 13 12 11 23 23 C 1.52997 * 117.49896 * 91.98105 * 13 12 11 24 24 C 1.47086 * 118.23615 * 308.48362 * 8 5 4 25 25 C 1.46900 * 110.99867 * 171.05683 * 3 2 1 26 26 H 1.08998 * 109.51492 * 67.28172 * 25 3 2 27 27 C 1.52997 * 109.49037 * 307.21048 * 25 3 2 28 28 H 1.09008 * 109.47180 * 299.99772 * 1 2 3 29 29 H 1.08994 * 109.47518 * 60.00065 * 1 2 3 30 30 H 1.08999 * 109.47170 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47065 * 240.00505 * 2 1 3 32 32 H 1.08994 * 109.47051 * 120.00189 * 2 1 3 33 33 H 1.09001 * 109.49300 * 292.70837 * 4 3 2 34 34 H 1.09007 * 109.49322 * 52.76242 * 4 3 2 35 35 H 1.08992 * 109.47352 * 292.43966 * 7 5 4 36 36 H 1.09006 * 109.47297 * 52.43713 * 7 5 4 37 37 H 1.09002 * 109.47164 * 172.43296 * 7 5 4 38 38 H 0.97006 * 120.00166 * 354.23156 * 11 9 8 39 39 H 1.08997 * 109.47069 * 304.16688 * 12 11 9 40 40 H 1.09005 * 109.46733 * 64.16778 * 12 11 9 41 41 H 0.97001 * 119.99818 * 185.01606 * 17 16 14 42 42 H 1.08997 * 117.49935 * 0.02562 * 22 13 12 43 43 H 1.09003 * 117.49458 * 145.02073 * 22 13 12 44 44 H 1.09004 * 117.50348 * 214.97973 * 23 13 12 45 45 H 1.09002 * 117.49751 * 359.97438 * 23 13 12 46 46 H 1.09001 * 109.62474 * 171.16424 * 24 8 5 47 47 H 1.08997 * 109.62687 * 291.55123 * 24 8 5 48 48 H 1.09003 * 109.47440 * 309.17227 * 27 25 3 49 49 H 1.09003 * 109.47437 * 69.17566 * 27 25 3 50 50 H 1.09000 * 109.47273 * 189.17652 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6414 2.0771 -1.2393 5 6 2.0077 3.5650 -1.1210 6 1 1.4029 4.0337 -0.3446 7 6 1.7641 4.2643 -2.4599 8 7 3.4313 3.6627 -0.7646 9 6 4.2692 4.4468 -1.4713 10 8 3.8330 5.1675 -2.3481 11 7 5.5906 4.4320 -1.2064 12 6 6.5157 5.1912 -2.0513 13 6 7.9535 4.9233 -1.6021 14 6 8.2331 5.1624 -0.1407 15 1 8.9255 4.5241 0.3881 16 6 7.6050 6.1959 0.5214 17 7 6.8161 7.0160 -0.1380 18 14 7.8743 6.4313 2.3548 19 1 8.7984 5.3833 2.8579 20 1 8.4646 7.7717 2.6003 21 1 6.5738 6.3256 3.0638 22 6 9.0739 5.2356 -2.5960 23 6 8.7068 3.7819 -2.2879 24 6 3.9150 2.8865 0.3874 25 6 3.4724 1.4298 0.2132 26 1 3.9803 0.9957 -0.6480 27 6 3.8285 0.6342 1.4706 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.1745 1.6341 -2.0805 34 1 0.5672 1.9794 -1.3972 35 1 2.4746 3.8931 -3.1983 36 1 0.7483 4.0585 -2.7977 37 1 1.8954 5.3394 -2.3375 38 1 5.9286 3.9218 -0.4537 39 1 6.3960 4.8825 -3.0897 40 1 6.2994 6.2558 -1.9614 41 1 6.4320 7.7852 0.3110 42 1 8.7868 5.6323 -3.5698 43 1 10.0135 5.6136 -2.1928 44 1 9.4050 3.2040 -1.6822 45 1 8.1779 3.2215 -3.0589 46 1 5.0030 2.9358 0.4311 47 1 3.4928 3.2933 1.3062 48 1 3.2007 0.9631 2.2987 49 1 3.6624 -0.4275 1.2881 50 1 4.8763 0.8002 1.7209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431053286.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:25 Heat of formation + Delta-G solvation = 23.858445 kcal Electronic energy + Delta-G solvation = -27876.532680 eV Core-core repulsion = 24326.543474 eV Total energy + Delta-G solvation = -3549.989206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.23667 -38.29856 -36.76453 -34.68224 -34.02014 -32.61102 -32.15313 -30.77264 -29.05930 -26.45608 -25.78133 -25.13802 -25.01105 -22.10486 -21.72868 -21.20064 -20.21046 -19.23929 -18.82184 -17.26835 -16.33211 -15.92029 -15.72744 -15.23198 -15.01084 -14.74002 -14.43117 -14.23778 -13.89253 -13.77790 -13.44643 -12.89411 -12.71159 -12.56526 -12.41090 -12.22245 -11.96250 -11.85097 -11.73905 -11.63622 -11.43822 -11.35981 -11.18101 -11.09548 -10.93009 -10.77395 -10.71372 -10.60344 -10.50520 -10.24830 -9.57281 -9.04235 -8.83476 -8.63075 -8.49839 -8.24106 -8.09207 -7.60638 -6.00571 -4.18049 3.19938 3.25790 3.30782 3.32468 3.76007 4.07587 4.29578 4.63183 4.76395 4.83251 4.93799 5.01998 5.10097 5.21745 5.29439 5.33206 5.36495 5.45079 5.50286 5.54478 5.60023 5.68667 5.75926 5.80627 5.90888 5.91295 5.99187 6.02074 6.05051 6.07079 6.22311 6.32969 6.52716 6.58311 6.63366 6.73654 6.76170 6.89265 6.97109 6.99628 7.08370 7.18532 7.28394 7.60239 7.70912 7.81228 8.00487 8.33901 8.77931 8.97780 9.44668 9.53981 10.91297 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.004537 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.330847 B = 6170.308349 C = 6661.096533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.046 3.954 3 N -0.533 5.533 4 C 0.043 3.957 5 C 0.170 3.830 6 H 0.069 0.931 7 C -0.132 4.132 8 N -0.637 5.637 9 C 0.702 3.298 10 O -0.598 6.598 11 N -0.705 5.705 12 C 0.182 3.818 13 C 0.039 3.961 14 C -0.499 4.499 15 H 0.061 0.939 16 C 0.076 3.924 17 N -0.863 5.863 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.283 1.283 22 C -0.197 4.197 23 C -0.212 4.212 24 C 0.124 3.876 25 C 0.069 3.931 26 H 0.045 0.955 27 C -0.147 4.147 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.029 0.971 32 H 0.080 0.920 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.035 0.965 37 H 0.083 0.917 38 H 0.393 0.607 39 H 0.018 0.982 40 H 0.109 0.891 41 H 0.262 0.738 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.086 0.914 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.056 0.944 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.278 -12.656 1.512 16.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.082 4.082 3 N -0.259 5.259 4 C -0.085 4.085 5 C 0.065 3.935 6 H 0.087 0.913 7 C -0.190 4.190 8 N -0.377 5.377 9 C 0.404 3.596 10 O -0.479 6.479 11 N -0.358 5.358 12 C 0.058 3.942 13 C 0.038 3.962 14 C -0.537 4.537 15 H 0.079 0.921 16 C -0.129 4.129 17 N -0.499 5.499 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.209 1.209 22 C -0.235 4.235 23 C -0.250 4.250 24 C -0.001 4.001 25 C -0.041 4.041 26 H 0.063 0.937 27 C -0.205 4.205 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.054 0.946 34 H 0.103 0.897 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.229 0.771 39 H 0.036 0.964 40 H 0.127 0.873 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.085 0.915 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.075 0.925 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.937 -11.732 1.271 16.089 hybrid contribution 0.876 -0.556 0.702 1.253 sum -10.060 -12.288 1.973 16.003 Atomic orbital electron populations 1.21813 0.95020 1.01304 1.02514 1.22144 0.95910 0.89253 1.00866 1.62025 1.12750 1.15066 1.36014 1.22749 1.00882 0.94671 0.90237 1.21111 0.80728 0.93606 0.98033 0.91277 1.22101 0.98706 1.02992 0.95175 1.47345 1.08661 1.49057 1.32588 1.15923 0.81513 0.80348 0.81788 1.90853 1.75633 1.44766 1.36602 1.45149 1.04022 1.52640 1.34014 1.20871 0.86212 0.98845 0.88269 1.19221 0.88766 0.95095 0.93121 1.20521 1.25860 1.15220 0.92056 0.92123 1.24986 0.94069 0.95821 0.98050 1.69866 1.30519 1.13567 1.35937 0.86575 0.78022 0.78273 0.85439 1.19709 1.20907 1.20852 1.22917 1.02457 0.97553 1.00610 1.22942 1.06320 0.91371 1.04344 1.21680 0.99572 0.89340 0.89485 1.22001 0.87710 0.96377 0.97981 0.93682 1.21883 1.02171 0.99211 0.97251 0.91818 0.92676 0.92525 0.95286 0.90206 0.94564 0.89730 0.91736 0.94629 0.89790 0.77064 0.96365 0.87339 0.92728 0.91519 0.90249 0.90739 0.91501 0.89547 0.91172 0.91406 0.92496 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.82 37.16 0.36 -0.87 16 2 C 0.05 0.44 5.36 -3.82 -0.02 0.42 16 3 N -0.53 -6.31 4.48 -226.05 -1.01 -7.33 16 4 C 0.04 0.55 4.77 -3.46 -0.02 0.53 16 5 C 0.17 2.58 3.67 -67.26 -0.25 2.34 16 6 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 7 C -0.13 -2.12 7.64 37.16 0.28 -1.83 16 8 N -0.64 -11.14 3.00 -170.34 -0.51 -11.65 16 9 C 0.70 15.08 8.07 -86.92 -0.70 14.38 16 10 O -0.60 -14.34 12.08 5.29 0.06 -14.28 16 11 N -0.71 -15.50 5.21 -65.23 -0.34 -15.84 16 12 C 0.18 4.37 4.66 -4.04 -0.02 4.35 16 13 C 0.04 0.92 2.03 -155.66 -0.32 0.60 16 14 C -0.50 -12.60 8.27 -34.44 -0.28 -12.89 16 15 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 16 C 0.08 1.93 5.24 -17.82 -0.09 1.83 16 17 N -0.86 -23.15 10.51 55.43 0.58 -22.56 16 18 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 19 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.20 -4.34 9.96 -26.69 -0.27 -4.61 16 23 C -0.21 -4.46 9.92 -26.70 -0.26 -4.72 16 24 C 0.12 1.85 5.87 -3.60 -0.02 1.83 16 25 C 0.07 0.85 2.60 -67.59 -0.18 0.68 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 C -0.15 -1.48 8.41 37.16 0.31 -1.16 16 28 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.05 0.46 6.37 -51.93 -0.33 0.13 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.29 8.13 -51.93 -0.42 -0.13 16 32 H 0.08 0.71 5.89 -51.93 -0.31 0.40 16 33 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.92 6.12 -51.92 -0.32 0.60 16 35 H 0.06 1.17 6.94 -51.93 -0.36 0.81 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 1.57 6.63 -51.93 -0.34 1.23 16 38 H 0.39 8.31 5.41 -40.82 -0.22 8.09 16 39 H 0.02 0.44 8.08 -51.93 -0.42 0.02 16 40 H 0.11 2.98 5.97 -51.93 -0.31 2.67 16 41 H 0.26 6.89 8.32 -40.82 -0.34 6.55 16 42 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 43 H 0.08 1.75 8.14 -51.93 -0.42 1.32 16 44 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.09 1.34 5.63 -51.93 -0.29 1.05 16 47 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 49 H 0.06 0.50 6.70 -51.93 -0.35 0.15 16 50 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -27.96 376.27 -10.75 -38.70 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -8.71 Total: 11.48 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.46 Total: 0.87 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -1.28 Total: -57.38 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: 0.06 Total: -14.28 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -27.96 -10.75 -38.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431053286.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.561 kcal (2) G-P(sol) polarization free energy of solvation -27.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds