Wall clock time and date at job start Tue Mar 31 2020 09:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.46869 * 2 1 4 4 C 1.46898 * 111.00143 * 295.35592 * 3 2 1 5 5 C 1.53695 * 109.25752 * 172.60896 * 4 3 2 6 6 H 1.09002 * 109.80123 * 294.41770 * 5 4 3 7 7 C 1.53001 * 109.70199 * 173.68823 * 5 4 3 8 8 N 1.47072 * 108.27895 * 54.08355 * 5 4 3 9 9 C 1.34781 * 120.88442 * 128.75480 * 8 5 4 10 10 O 1.21587 * 119.99559 * 5.93786 * 9 8 5 11 11 N 1.34775 * 120.00187 * 185.94670 * 9 8 5 12 12 C 1.46499 * 120.00180 * 174.51029 * 11 9 8 13 13 C 1.52996 * 109.47250 * 184.16553 * 12 11 9 14 14 C 1.50698 * 115.55089 * 306.31138 * 13 12 11 15 15 H 1.08001 * 119.99956 * 144.24819 * 14 13 12 16 16 C 1.37873 * 120.00170 * 324.24652 * 14 13 12 17 17 N 1.31515 * 119.99854 * 356.43342 * 16 14 13 18 18 Si 1.86798 * 120.00316 * 176.43172 * 16 14 13 19 19 H 1.48498 * 109.47004 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47233 * 119.99667 * 18 16 14 21 21 H 1.48502 * 109.47146 * 240.00135 * 18 16 14 22 22 C 1.53002 * 117.49761 * 160.63843 * 13 12 11 23 23 C 1.52997 * 117.49896 * 91.98105 * 13 12 11 24 24 C 1.47086 * 118.23615 * 308.48362 * 8 5 4 25 25 C 1.46900 * 110.99867 * 171.05683 * 3 2 1 26 26 H 1.08998 * 109.51492 * 67.28172 * 25 3 2 27 27 C 1.52997 * 109.49037 * 307.21048 * 25 3 2 28 28 H 1.09008 * 109.47180 * 299.99772 * 1 2 3 29 29 H 1.08994 * 109.47518 * 60.00065 * 1 2 3 30 30 H 1.08999 * 109.47170 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47065 * 240.00505 * 2 1 3 32 32 H 1.08994 * 109.47051 * 120.00189 * 2 1 3 33 33 H 1.09001 * 109.49300 * 292.70837 * 4 3 2 34 34 H 1.09007 * 109.49322 * 52.76242 * 4 3 2 35 35 H 1.08992 * 109.47352 * 292.43966 * 7 5 4 36 36 H 1.09006 * 109.47297 * 52.43713 * 7 5 4 37 37 H 1.09002 * 109.47164 * 172.43296 * 7 5 4 38 38 H 0.97006 * 120.00166 * 354.23156 * 11 9 8 39 39 H 1.08997 * 109.47069 * 304.16688 * 12 11 9 40 40 H 1.09005 * 109.46733 * 64.16778 * 12 11 9 41 41 H 0.97001 * 119.99818 * 185.01606 * 17 16 14 42 42 H 1.08997 * 117.49935 * 0.02562 * 22 13 12 43 43 H 1.09003 * 117.49458 * 145.02073 * 22 13 12 44 44 H 1.09004 * 117.50348 * 214.97973 * 23 13 12 45 45 H 1.09002 * 117.49751 * 359.97438 * 23 13 12 46 46 H 1.09001 * 109.62474 * 171.16424 * 24 8 5 47 47 H 1.08997 * 109.62687 * 291.55123 * 24 8 5 48 48 H 1.09003 * 109.47440 * 309.17227 * 27 25 3 49 49 H 1.09003 * 109.47437 * 69.17566 * 27 25 3 50 50 H 1.09000 * 109.47273 * 189.17652 * 27 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6414 2.0771 -1.2393 5 6 2.0077 3.5650 -1.1210 6 1 1.4029 4.0337 -0.3446 7 6 1.7641 4.2643 -2.4599 8 7 3.4313 3.6627 -0.7646 9 6 4.2692 4.4468 -1.4713 10 8 3.8330 5.1675 -2.3481 11 7 5.5906 4.4320 -1.2064 12 6 6.5157 5.1912 -2.0513 13 6 7.9535 4.9233 -1.6021 14 6 8.2331 5.1624 -0.1407 15 1 8.9255 4.5241 0.3881 16 6 7.6050 6.1959 0.5214 17 7 6.8161 7.0160 -0.1380 18 14 7.8743 6.4313 2.3548 19 1 8.7984 5.3833 2.8579 20 1 8.4646 7.7717 2.6003 21 1 6.5738 6.3256 3.0638 22 6 9.0739 5.2356 -2.5960 23 6 8.7068 3.7819 -2.2879 24 6 3.9150 2.8865 0.3874 25 6 3.4724 1.4298 0.2132 26 1 3.9803 0.9957 -0.6480 27 6 3.8285 0.6342 1.4706 28 1 -0.3634 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 2.1745 1.6341 -2.0805 34 1 0.5672 1.9794 -1.3972 35 1 2.4746 3.8931 -3.1983 36 1 0.7483 4.0585 -2.7977 37 1 1.8954 5.3394 -2.3375 38 1 5.9286 3.9218 -0.4537 39 1 6.3960 4.8825 -3.0897 40 1 6.2994 6.2558 -1.9614 41 1 6.4320 7.7852 0.3110 42 1 8.7868 5.6323 -3.5698 43 1 10.0135 5.6136 -2.1928 44 1 9.4050 3.2040 -1.6822 45 1 8.1779 3.2215 -3.0589 46 1 5.0030 2.9358 0.4311 47 1 3.4928 3.2933 1.3062 48 1 3.2007 0.9631 2.2987 49 1 3.6624 -0.4275 1.2881 50 1 4.8763 0.8002 1.7209 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431053286.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:25 Heat of formation + Delta-G solvation = 7.611935 kcal Electronic energy + Delta-G solvation = -27877.237181 eV Core-core repulsion = 24326.543474 eV Total energy + Delta-G solvation = -3550.693707 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.62779 -39.63527 -38.50193 -35.99177 -35.46410 -34.20381 -33.83588 -31.89601 -30.06275 -27.94247 -27.45685 -26.74011 -26.18447 -23.12963 -22.98436 -22.88209 -21.30849 -21.07161 -20.35150 -18.82995 -18.01057 -17.25703 -16.89457 -16.78031 -16.41426 -16.15683 -15.64030 -15.54230 -15.40418 -15.20242 -14.82760 -14.39723 -14.17721 -13.81971 -13.68832 -13.41943 -13.25254 -13.13929 -12.93213 -12.91095 -12.75656 -12.72151 -12.58123 -12.49753 -12.27457 -12.19340 -12.04534 -11.98672 -11.89610 -11.47357 -11.39977 -10.94978 -10.66908 -10.31498 -10.07856 -9.81501 -9.45183 -9.15087 -7.95187 -6.18566 1.40856 1.46533 1.55381 1.81600 2.36623 2.42662 2.83220 2.98709 3.25843 3.66238 3.74980 3.85244 3.94279 4.14478 4.15708 4.24620 4.28131 4.32888 4.47693 4.52118 4.54020 4.64146 4.65271 4.68719 4.73701 4.80486 4.80728 4.83971 4.87571 4.95519 4.98870 5.06478 5.11416 5.18111 5.21011 5.28371 5.33849 5.40564 5.42099 5.53198 5.61730 5.75601 5.97477 5.99621 6.05321 6.06903 6.22505 6.39810 6.83150 7.28491 7.46423 7.84946 8.94277 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.004537 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.330847 B = 6170.308349 C = 6661.096533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.045 3.955 3 N -0.536 5.536 4 C 0.055 3.945 5 C 0.163 3.837 6 H 0.074 0.926 7 C -0.120 4.120 8 N -0.634 5.634 9 C 0.695 3.305 10 O -0.630 6.630 11 N -0.704 5.704 12 C 0.197 3.803 13 C 0.011 3.989 14 C -0.504 4.504 15 H 0.060 0.940 16 C 0.037 3.963 17 N -0.891 5.891 18 Si 0.946 3.054 19 H -0.262 1.262 20 H -0.288 1.288 21 H -0.284 1.284 22 C -0.198 4.198 23 C -0.186 4.186 24 C 0.120 3.880 25 C 0.075 3.925 26 H 0.033 0.967 27 C -0.140 4.140 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.028 0.972 32 H 0.092 0.908 33 H 0.025 0.975 34 H 0.109 0.891 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.396 0.604 39 H 0.012 0.988 40 H 0.071 0.929 41 H 0.256 0.744 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.077 0.923 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.074 0.926 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 -15.127 2.745 18.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 N -0.262 5.262 4 C -0.074 4.074 5 C 0.060 3.940 6 H 0.092 0.908 7 C -0.178 4.178 8 N -0.372 5.372 9 C 0.397 3.603 10 O -0.513 6.513 11 N -0.358 5.358 12 C 0.072 3.928 13 C 0.010 3.990 14 C -0.541 4.541 15 H 0.078 0.922 16 C -0.165 4.165 17 N -0.527 5.527 18 Si 0.773 3.227 19 H -0.186 1.186 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.237 4.237 23 C -0.223 4.223 24 C -0.004 4.004 25 C -0.034 4.034 26 H 0.051 0.949 27 C -0.198 4.198 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.043 0.957 34 H 0.127 0.873 35 H 0.057 0.943 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.233 0.767 39 H 0.030 0.970 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.093 0.907 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.658 -14.254 2.533 18.587 hybrid contribution 1.074 0.204 0.286 1.130 sum -10.584 -14.050 2.818 17.814 Atomic orbital electron populations 1.21789 0.93782 1.02387 1.02289 1.22248 0.96881 0.87659 1.01391 1.62051 1.12146 1.16664 1.35292 1.22615 1.02094 0.92399 0.90312 1.21327 0.79387 0.95783 0.97522 0.90763 1.21881 1.00011 1.00738 0.95178 1.47437 1.09154 1.48143 1.32515 1.16161 0.81662 0.80590 0.81923 1.90843 1.76155 1.46212 1.38124 1.45026 1.04188 1.52573 1.33992 1.20491 0.87152 0.96867 0.88303 1.19259 0.88785 0.97927 0.93017 1.20703 1.25541 1.14957 0.92913 0.92219 1.25579 0.93921 0.95633 1.01357 1.70055 1.31648 1.13936 1.37098 0.85682 0.77804 0.77940 0.81298 1.18636 1.21461 1.20960 1.22936 1.01602 0.98724 1.00388 1.22923 1.05032 0.90711 1.03632 1.21851 0.99143 0.90878 0.88481 1.21912 0.88173 0.94497 0.98850 0.94908 1.21846 1.02355 0.99763 0.95863 0.92077 0.92799 0.90866 0.95395 0.88996 0.95698 0.87328 0.94285 0.91090 0.93101 0.76657 0.97028 0.91064 0.93433 0.90853 0.90354 0.89640 0.90177 0.90454 0.90830 0.91000 0.90737 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.82 71.98 0.71 -1.22 16 2 C 0.05 0.73 5.36 86.30 0.46 1.19 16 3 N -0.54 -11.46 4.48 -869.10 -3.90 -15.36 16 4 C 0.05 1.28 4.77 86.54 0.41 1.69 16 5 C 0.16 4.89 3.67 45.12 0.17 5.05 16 6 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 7 C -0.12 -3.90 7.64 71.98 0.55 -3.35 16 8 N -0.63 -22.37 3.00 -811.09 -2.44 -24.80 16 9 C 0.69 30.83 8.07 179.05 1.45 32.27 16 10 O -0.63 -31.69 12.08 -3.99 -0.05 -31.74 16 11 N -0.70 -31.80 5.21 -478.54 -2.49 -34.29 16 12 C 0.20 9.74 4.66 86.38 0.40 10.14 16 13 C 0.01 0.51 2.03 -52.93 -0.11 0.41 16 14 C -0.50 -25.36 8.27 25.60 0.21 -25.15 16 15 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 16 C 0.04 1.89 5.24 84.65 0.44 2.34 16 17 N -0.89 -49.03 10.51 21.45 0.23 -48.80 16 18 Si 0.95 41.03 29.54 68.60 2.03 43.05 16 19 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 20 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 C -0.20 -8.63 9.96 30.62 0.30 -8.32 16 23 C -0.19 -7.53 9.92 30.62 0.30 -7.22 16 24 C 0.12 3.52 5.87 86.35 0.51 4.02 16 25 C 0.08 1.74 2.60 45.00 0.12 1.86 16 26 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 27 C -0.14 -2.45 8.41 71.98 0.61 -1.85 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.05 0.73 6.37 -2.39 -0.02 0.71 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.03 0.47 8.13 -2.39 -0.02 0.46 16 32 H 0.09 1.29 5.89 -2.39 -0.01 1.28 16 33 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.11 2.04 6.12 -2.38 -0.01 2.03 16 35 H 0.04 1.45 6.94 -2.39 -0.02 1.43 16 36 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.05 1.98 6.63 -2.39 -0.02 1.96 16 38 H 0.40 17.05 5.41 -92.70 -0.50 16.55 16 39 H 0.01 0.57 8.08 -2.39 -0.02 0.55 16 40 H 0.07 4.11 5.97 -2.38 -0.01 4.09 16 41 H 0.26 13.88 8.32 -92.71 -0.77 13.11 16 42 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 43 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 44 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 45 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 46 H 0.08 2.39 5.63 -2.39 -0.01 2.38 16 47 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 48 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 49 H 0.07 1.06 6.70 -2.39 -0.02 1.04 16 50 H 0.07 1.20 8.12 -2.39 -0.02 1.18 16 Total: -1.00 -61.45 376.27 0.32 -61.12 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: 0.41 Total: 38.96 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: 6.53 Total: 11.87 kcal Atomic # 7 Polarization: -114.66 SS G_CDS: -8.60 Total: -123.26 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.05 Total: -31.74 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Total: -61.45 0.32 -61.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431053286.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.735 kcal (2) G-P(sol) polarization free energy of solvation -61.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds