Wall clock time and date at job start Tue Mar 31 2020 09:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.64841 * 2 1 4 4 C 1.54943 * 110.87896 * 236.73890 * 2 1 3 5 5 N 1.48529 * 103.23110 * 204.15497 * 4 2 1 6 6 C 1.46896 * 111.00073 * 159.72217 * 5 4 2 7 7 C 1.53002 * 117.49888 * 11.09938 * 6 5 4 8 8 C 1.52997 * 60.00174 * 252.51108 * 7 6 5 9 9 C 1.47906 * 105.81645 * 39.20833 * 5 4 2 10 10 C 1.53997 * 107.05871 * 334.66750 * 9 5 4 11 11 H 1.09005 * 110.30580 * 120.14185 * 10 9 5 12 12 N 1.46494 * 110.30728 * 242.30780 * 10 9 5 13 13 C 1.34776 * 120.00248 * 273.54417 * 12 10 9 14 14 O 1.21593 * 119.99952 * 0.02562 * 13 12 10 15 15 N 1.34774 * 120.00507 * 180.02562 * 13 12 10 16 16 C 1.46498 * 120.00494 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47361 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.46893 * 300.00126 * 17 16 15 19 19 C 1.52999 * 109.46879 * 59.99912 * 17 16 15 20 20 C 1.50697 * 109.46973 * 180.02562 * 17 16 15 21 21 H 1.07998 * 120.00073 * 0.02562 * 20 17 16 22 22 C 1.37880 * 119.99458 * 179.97438 * 20 17 16 23 23 N 1.31506 * 120.00568 * 0.02562 * 22 20 17 24 24 Si 1.86804 * 119.99520 * 180.02562 * 22 20 17 25 25 H 1.48496 * 109.47247 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47015 * 120.00217 * 24 22 20 27 27 H 1.48503 * 109.47115 * 239.99997 * 24 22 20 28 28 H 1.08998 * 109.47159 * 296.85192 * 1 2 3 29 29 H 1.09006 * 109.46867 * 56.84621 * 1 2 3 30 30 H 1.09003 * 109.46992 * 176.84533 * 1 2 3 31 31 H 1.08995 * 110.66363 * 322.59604 * 4 2 1 32 32 H 1.09004 * 110.66427 * 85.72318 * 4 2 1 33 33 H 1.09003 * 115.54978 * 156.81192 * 6 5 4 34 34 H 1.09000 * 117.49642 * 0.02562 * 7 6 5 35 35 H 1.09002 * 117.49752 * 145.01949 * 7 6 5 36 36 H 1.08997 * 117.50062 * 252.50983 * 8 7 6 37 37 H 1.09002 * 117.49773 * 107.48593 * 8 7 6 38 38 H 1.08998 * 109.91583 * 215.31824 * 9 5 4 39 39 H 1.09004 * 109.91554 * 94.02407 * 9 5 4 40 40 H 0.97000 * 120.00490 * 93.55217 * 12 10 9 41 41 H 0.97003 * 119.99578 * 0.02562 * 15 13 12 42 42 H 1.09001 * 109.46927 * 300.00064 * 16 15 13 43 43 H 1.09002 * 109.47138 * 60.00279 * 16 15 13 44 44 H 1.09007 * 109.47452 * 60.00486 * 18 17 16 45 45 H 1.09004 * 109.47267 * 179.97438 * 18 17 16 46 46 H 1.08997 * 109.47611 * 299.99979 * 18 17 16 47 47 H 1.09003 * 109.46885 * 60.00468 * 19 17 16 48 48 H 1.09002 * 109.47051 * 179.97438 * 19 17 16 49 49 H 1.08997 * 109.47480 * 300.00171 * 19 17 16 50 50 H 0.96997 * 120.00269 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0822 -0.7940 -1.2105 5 7 3.4360 -1.2051 -0.7585 6 6 3.9294 -2.3449 -1.5428 7 6 3.1456 -2.7301 -2.7991 8 6 3.0782 -3.6163 -1.5537 9 6 3.2921 -1.5662 0.6686 10 6 2.0770 -0.7907 1.2106 11 1 1.3218 -1.4829 1.5829 12 7 2.4932 0.1287 2.2724 13 6 2.5738 -0.3048 3.5460 14 8 2.3016 -1.4593 3.8135 15 7 2.9562 0.5411 4.5230 16 6 3.0444 0.0697 5.9072 17 6 3.4981 1.2190 6.8096 18 6 4.8708 1.7156 6.3515 19 6 2.4869 2.3641 6.7242 20 6 3.5894 0.7338 8.2334 21 1 3.3484 -0.2918 8.4709 22 6 3.9817 1.5991 9.2327 23 7 4.2757 2.8478 8.9434 24 14 4.0956 0.9974 10.9975 25 1 3.7145 -0.4366 11.0572 26 1 5.4879 1.1610 11.4873 27 1 3.1743 1.7899 11.8510 28 1 -0.3633 0.4642 0.9168 29 1 -0.3633 0.5621 -0.8604 30 1 -0.3633 -1.0261 -0.0566 31 1 1.4623 -1.6674 -1.4127 32 1 2.1482 -0.1555 -2.0915 33 1 5.0125 -2.4641 -1.5686 34 1 2.2641 -2.1375 -3.0438 35 1 3.7131 -3.1027 -3.6519 36 1 3.6014 -4.5719 -1.5871 37 1 2.1522 -3.6069 -0.9788 38 1 4.1898 -1.2798 1.2164 39 1 3.1213 -2.6385 0.7648 40 1 2.7106 1.0497 2.0590 41 1 3.1730 1.4622 4.3096 42 1 2.0665 -0.2845 6.2334 43 1 3.7651 -0.7458 5.9681 44 1 4.8052 2.0665 5.3215 45 1 5.1939 2.5347 6.9940 46 1 5.5912 0.8999 6.4122 47 1 1.5090 2.0102 7.0506 48 1 2.8099 3.1827 7.3674 49 1 2.4213 2.7149 5.6944 50 1 4.5520 3.4564 9.6464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458571735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:37 Heat of formation + Delta-G solvation = -0.719616 kcal Electronic energy + Delta-G solvation = -26424.019143 eV Core-core repulsion = 22872.964153 eV Total energy + Delta-G solvation = -3551.054990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.50712 -39.23707 -36.88548 -36.08878 -33.46088 -33.03731 -32.02555 -30.76066 -28.15834 -26.36629 -25.69443 -25.49590 -24.68990 -22.88569 -22.62438 -20.63681 -20.60860 -19.93106 -18.74714 -17.91638 -16.89572 -16.65284 -15.79652 -15.54552 -15.03597 -14.87177 -14.70534 -14.12815 -13.78938 -13.54934 -13.38744 -13.24046 -12.99530 -12.85254 -12.66920 -12.44505 -12.15662 -11.99851 -11.82828 -11.49163 -11.31513 -11.18238 -11.13993 -11.03628 -10.85654 -10.81106 -10.63826 -10.48322 -10.35636 -10.18795 -9.73858 -9.60234 -9.27895 -8.96085 -8.75546 -8.61414 -8.39677 -8.16148 -6.00183 -4.09881 3.09284 3.28570 3.37002 3.37485 3.42471 3.65093 3.71436 4.23270 4.33730 4.40557 4.54127 4.58136 4.65599 4.76242 4.85085 5.06299 5.16942 5.22754 5.26711 5.28439 5.30602 5.46477 5.52874 5.62735 5.68154 5.72666 5.73916 5.87502 5.94126 5.98108 6.24217 6.39756 6.53335 6.57605 6.72606 6.77031 6.83176 6.86069 6.94511 7.06204 7.13453 7.34515 7.45481 7.58852 7.72305 8.04003 8.15364 8.40964 8.52365 8.90409 9.08241 9.55845 11.01297 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.002555 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.986633 B =10954.833119 C =11266.579523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 H 0.090 0.910 4 C 0.034 3.966 5 N -0.484 5.484 6 C 0.015 3.985 7 C -0.184 4.184 8 C -0.215 4.215 9 C 0.024 3.976 10 C 0.163 3.837 11 H 0.094 0.906 12 N -0.743 5.743 13 C 0.697 3.303 14 O -0.601 6.601 15 N -0.733 5.733 16 C 0.151 3.849 17 C 0.056 3.944 18 C -0.130 4.130 19 C -0.130 4.130 20 C -0.504 4.504 21 H 0.058 0.942 22 C 0.065 3.935 23 N -0.886 5.886 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.285 1.285 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.395 0.605 41 H 0.393 0.607 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.006 0.994 45 H 0.085 0.915 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.085 0.915 49 H 0.006 0.994 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.057 -4.508 -22.562 23.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 H 0.108 0.892 4 C -0.094 4.094 5 N -0.206 5.206 6 C -0.095 4.095 7 C -0.221 4.221 8 C -0.254 4.254 9 C -0.104 4.104 10 C 0.056 3.944 11 H 0.112 0.888 12 N -0.399 5.399 13 C 0.397 3.603 14 O -0.480 6.480 15 N -0.387 5.387 16 C 0.028 3.972 17 C 0.055 3.945 18 C -0.188 4.188 19 C -0.188 4.188 20 C -0.542 4.542 21 H 0.076 0.924 22 C -0.136 4.136 23 N -0.525 5.525 24 Si 0.721 3.279 25 H -0.198 1.198 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.075 0.925 40 H 0.229 0.771 41 H 0.228 0.772 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.025 0.975 45 H 0.103 0.897 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.103 0.897 49 H 0.025 0.975 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.852 -4.989 -22.217 23.093 hybrid contribution -0.199 -0.174 0.835 0.875 sum -4.051 -5.162 -21.382 22.366 Atomic orbital electron populations 1.21769 0.93779 1.02140 1.02381 1.22374 0.96108 1.00167 0.93568 0.89182 1.23400 0.89418 0.98588 0.97952 1.64822 1.22882 1.30587 1.02357 1.23017 0.98081 0.90071 0.98327 1.23307 1.03037 1.03477 0.92306 1.23415 1.03428 0.96507 1.02060 1.23442 0.99736 0.99161 0.88088 1.21599 0.95292 0.91294 0.86254 0.88834 1.45185 1.74773 1.14129 1.05847 1.16101 0.78506 0.85211 0.80450 1.90879 1.57334 1.17347 1.82410 1.45507 1.71545 1.13386 1.08237 1.21570 1.00120 0.98318 0.77200 1.18363 0.92308 0.90505 0.93310 1.21820 0.98388 1.01751 0.96806 1.21818 0.98045 1.01580 0.97308 1.21031 1.45314 0.96902 0.90987 0.92377 1.24880 0.94985 0.94860 0.98844 1.69811 1.46143 1.04144 1.32410 0.86523 0.77576 0.79022 0.84810 1.19755 1.21083 1.21096 0.91846 0.92188 0.92506 0.92856 0.89615 0.85677 0.88162 0.88353 0.88393 0.88757 0.89486 0.92510 0.77142 0.77196 0.93034 0.93020 0.97522 0.89672 0.95464 0.95487 0.89672 0.97530 0.93099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.17 37.16 0.34 -0.77 16 2 C -0.10 -0.89 3.36 -88.76 -0.30 -1.19 16 3 H 0.09 0.76 7.74 -51.93 -0.40 0.36 16 4 C 0.03 0.29 4.52 -1.90 -0.01 0.28 16 5 N -0.48 -4.88 5.54 -222.49 -1.23 -6.11 16 6 C 0.01 0.13 6.32 -67.71 -0.43 -0.30 16 7 C -0.18 -1.32 9.57 -26.73 -0.26 -1.57 16 8 C -0.22 -1.75 8.86 -26.73 -0.24 -1.98 16 9 C 0.02 0.29 6.38 -2.75 -0.02 0.27 16 10 C 0.16 1.91 2.87 -66.58 -0.19 1.72 16 11 H 0.09 1.27 7.36 -51.93 -0.38 0.89 16 12 N -0.74 -9.74 5.03 -57.35 -0.29 -10.03 16 13 C 0.70 12.38 8.56 -86.92 -0.74 11.63 16 14 O -0.60 -12.98 16.04 5.28 0.08 -12.89 16 15 N -0.73 -13.23 4.96 -65.22 -0.32 -13.55 16 16 C 0.15 3.27 4.50 -4.04 -0.02 3.25 16 17 C 0.06 1.30 0.50 -155.66 -0.08 1.22 16 18 C -0.13 -2.95 8.07 37.16 0.30 -2.65 16 19 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 20 C -0.50 -13.28 8.01 -34.44 -0.28 -13.56 16 21 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 22 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 23 N -0.89 -23.71 9.35 55.43 0.52 -23.19 16 24 Si 0.89 20.84 29.54 -169.99 -5.02 15.81 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 8.11 -51.93 -0.42 0.02 16 31 H 0.05 0.42 5.65 -51.93 -0.29 0.13 16 32 H 0.09 0.64 8.06 -51.93 -0.42 0.22 16 33 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.10 0.68 6.09 -51.93 -0.32 0.36 16 35 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.83 7.19 -51.93 -0.37 0.45 16 38 H 0.09 1.20 7.92 -51.93 -0.41 0.78 16 39 H 0.06 0.71 6.72 -51.93 -0.35 0.36 16 40 H 0.39 4.26 8.36 -40.82 -0.34 3.92 16 41 H 0.39 6.39 6.18 -40.82 -0.25 6.14 16 42 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 43 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 45 H 0.08 2.13 6.07 -51.93 -0.32 1.82 16 46 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.08 2.13 6.07 -51.93 -0.32 1.81 16 49 H 0.01 0.11 6.86 -51.93 -0.36 -0.24 16 50 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 LS Contribution 380.27 15.07 5.73 5.73 Total: -1.00 -29.08 380.27 -10.88 -39.96 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.65 Total: 8.92 kcal Atomic # 6 Polarization: -2.95 SS G_CDS: -1.70 Total: -4.65 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: -1.33 Total: -52.88 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.89 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.08 -10.88 -39.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458571735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.244 kcal (2) G-P(sol) polarization free energy of solvation -29.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds