Wall clock time and date at job start Tue Mar 31 2020 09:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 110.64841 * 2 1 4 4 C 1.54943 * 110.87896 * 236.73890 * 2 1 3 5 5 N 1.48529 * 103.23110 * 204.15497 * 4 2 1 6 6 C 1.46896 * 111.00073 * 159.72217 * 5 4 2 7 7 C 1.53002 * 117.49888 * 11.09938 * 6 5 4 8 8 C 1.52997 * 60.00174 * 252.51108 * 7 6 5 9 9 C 1.47906 * 105.81645 * 39.20833 * 5 4 2 10 10 C 1.53997 * 107.05871 * 334.66750 * 9 5 4 11 11 H 1.09005 * 110.30580 * 120.14185 * 10 9 5 12 12 N 1.46494 * 110.30728 * 242.30780 * 10 9 5 13 13 C 1.34776 * 120.00248 * 273.54417 * 12 10 9 14 14 O 1.21593 * 119.99952 * 0.02562 * 13 12 10 15 15 N 1.34774 * 120.00507 * 180.02562 * 13 12 10 16 16 C 1.46498 * 120.00494 * 180.02562 * 15 13 12 17 17 C 1.53006 * 109.47361 * 179.97438 * 16 15 13 18 18 C 1.52996 * 109.46893 * 300.00126 * 17 16 15 19 19 C 1.52999 * 109.46879 * 59.99912 * 17 16 15 20 20 C 1.50697 * 109.46973 * 180.02562 * 17 16 15 21 21 H 1.07998 * 120.00073 * 0.02562 * 20 17 16 22 22 C 1.37880 * 119.99458 * 179.97438 * 20 17 16 23 23 N 1.31506 * 120.00568 * 0.02562 * 22 20 17 24 24 Si 1.86804 * 119.99520 * 180.02562 * 22 20 17 25 25 H 1.48496 * 109.47247 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47015 * 120.00217 * 24 22 20 27 27 H 1.48503 * 109.47115 * 239.99997 * 24 22 20 28 28 H 1.08998 * 109.47159 * 296.85192 * 1 2 3 29 29 H 1.09006 * 109.46867 * 56.84621 * 1 2 3 30 30 H 1.09003 * 109.46992 * 176.84533 * 1 2 3 31 31 H 1.08995 * 110.66363 * 322.59604 * 4 2 1 32 32 H 1.09004 * 110.66427 * 85.72318 * 4 2 1 33 33 H 1.09003 * 115.54978 * 156.81192 * 6 5 4 34 34 H 1.09000 * 117.49642 * 0.02562 * 7 6 5 35 35 H 1.09002 * 117.49752 * 145.01949 * 7 6 5 36 36 H 1.08997 * 117.50062 * 252.50983 * 8 7 6 37 37 H 1.09002 * 117.49773 * 107.48593 * 8 7 6 38 38 H 1.08998 * 109.91583 * 215.31824 * 9 5 4 39 39 H 1.09004 * 109.91554 * 94.02407 * 9 5 4 40 40 H 0.97000 * 120.00490 * 93.55217 * 12 10 9 41 41 H 0.97003 * 119.99578 * 0.02562 * 15 13 12 42 42 H 1.09001 * 109.46927 * 300.00064 * 16 15 13 43 43 H 1.09002 * 109.47138 * 60.00279 * 16 15 13 44 44 H 1.09007 * 109.47452 * 60.00486 * 18 17 16 45 45 H 1.09004 * 109.47267 * 179.97438 * 18 17 16 46 46 H 1.08997 * 109.47611 * 299.99979 * 18 17 16 47 47 H 1.09003 * 109.46885 * 60.00468 * 19 17 16 48 48 H 1.09002 * 109.47051 * 179.97438 * 19 17 16 49 49 H 1.08997 * 109.47480 * 300.00171 * 19 17 16 50 50 H 0.96997 * 120.00269 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0822 -0.7940 -1.2105 5 7 3.4360 -1.2051 -0.7585 6 6 3.9294 -2.3449 -1.5428 7 6 3.1456 -2.7301 -2.7991 8 6 3.0782 -3.6163 -1.5537 9 6 3.2921 -1.5662 0.6686 10 6 2.0770 -0.7907 1.2106 11 1 1.3218 -1.4829 1.5829 12 7 2.4932 0.1287 2.2724 13 6 2.5738 -0.3048 3.5460 14 8 2.3016 -1.4593 3.8135 15 7 2.9562 0.5411 4.5230 16 6 3.0444 0.0697 5.9072 17 6 3.4981 1.2190 6.8096 18 6 4.8708 1.7156 6.3515 19 6 2.4869 2.3641 6.7242 20 6 3.5894 0.7338 8.2334 21 1 3.3484 -0.2918 8.4709 22 6 3.9817 1.5991 9.2327 23 7 4.2757 2.8478 8.9434 24 14 4.0956 0.9974 10.9975 25 1 3.7145 -0.4366 11.0572 26 1 5.4879 1.1610 11.4873 27 1 3.1743 1.7899 11.8510 28 1 -0.3633 0.4642 0.9168 29 1 -0.3633 0.5621 -0.8604 30 1 -0.3633 -1.0261 -0.0566 31 1 1.4623 -1.6674 -1.4127 32 1 2.1482 -0.1555 -2.0915 33 1 5.0125 -2.4641 -1.5686 34 1 2.2641 -2.1375 -3.0438 35 1 3.7131 -3.1027 -3.6519 36 1 3.6014 -4.5719 -1.5871 37 1 2.1522 -3.6069 -0.9788 38 1 4.1898 -1.2798 1.2164 39 1 3.1213 -2.6385 0.7648 40 1 2.7106 1.0497 2.0590 41 1 3.1730 1.4622 4.3096 42 1 2.0665 -0.2845 6.2334 43 1 3.7651 -0.7458 5.9681 44 1 4.8052 2.0665 5.3215 45 1 5.1939 2.5347 6.9940 46 1 5.5912 0.8999 6.4122 47 1 1.5090 2.0102 7.0506 48 1 2.8099 3.1827 7.3674 49 1 2.4213 2.7149 5.6944 50 1 4.5520 3.4564 9.6464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458571735.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:19:37 Heat of formation + Delta-G solvation = -19.548673 kcal Electronic energy + Delta-G solvation = -26424.835633 eV Core-core repulsion = 22872.964153 eV Total energy + Delta-G solvation = -3551.871480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51190 -40.45822 -38.30594 -37.28778 -35.01596 -34.41005 -32.76734 -32.55624 -29.18312 -27.54689 -27.42831 -27.07832 -26.36689 -23.80487 -23.25717 -21.91036 -21.49150 -20.79330 -20.56224 -19.30788 -17.83088 -17.74654 -17.50689 -16.64395 -16.46646 -16.20938 -16.04707 -15.29973 -15.26007 -14.77319 -14.68782 -14.26921 -14.17057 -14.04604 -13.95353 -13.61169 -13.25154 -13.16696 -13.09559 -12.75871 -12.68320 -12.56150 -12.43254 -12.30204 -12.21933 -12.13172 -11.84058 -11.73828 -11.56534 -11.47079 -11.33618 -11.16356 -11.08486 -10.68526 -10.40127 -10.26984 -9.66933 -9.37821 -8.01608 -6.17005 1.41678 1.45738 1.55165 1.80245 2.20774 2.46836 2.68734 3.01576 3.22025 3.38919 3.50926 3.57491 3.85444 3.94807 4.02604 4.11650 4.20063 4.33421 4.43475 4.52597 4.55047 4.62478 4.70378 4.72119 4.74440 4.81261 4.86500 4.96010 5.01266 5.02833 5.07436 5.07767 5.12503 5.15867 5.21788 5.22016 5.31976 5.40118 5.60444 5.65460 5.68480 5.68805 5.78000 6.01879 6.10737 6.16680 6.23491 6.45044 6.87525 7.18280 7.50689 7.65974 8.97577 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.029069 B = 0.002555 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.986633 B =10954.833119 C =11266.579523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 H 0.101 0.899 4 C 0.037 3.963 5 N -0.489 5.489 6 C -0.005 4.005 7 C -0.165 4.165 8 C -0.219 4.219 9 C 0.031 3.969 10 C 0.159 3.841 11 H 0.073 0.927 12 N -0.723 5.723 13 C 0.697 3.303 14 O -0.641 6.641 15 N -0.726 5.726 16 C 0.169 3.831 17 C 0.053 3.947 18 C -0.120 4.120 19 C -0.120 4.120 20 C -0.527 4.527 21 H 0.044 0.956 22 C 0.028 3.972 23 N -0.899 5.899 24 Si 0.945 3.055 25 H -0.276 1.276 26 H -0.281 1.281 27 H -0.281 1.281 28 H 0.052 0.948 29 H 0.080 0.920 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.104 0.896 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.065 0.935 39 H 0.044 0.956 40 H 0.410 0.590 41 H 0.405 0.595 42 H 0.034 0.966 43 H 0.033 0.967 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.016 0.984 47 H 0.017 0.983 48 H 0.062 0.938 49 H 0.037 0.963 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.461 -3.732 -24.822 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.111 4.111 3 H 0.119 0.881 4 C -0.090 4.090 5 N -0.211 5.211 6 C -0.114 4.114 7 C -0.202 4.202 8 C -0.258 4.258 9 C -0.098 4.098 10 C 0.052 3.948 11 H 0.091 0.909 12 N -0.379 5.379 13 C 0.397 3.603 14 O -0.523 6.523 15 N -0.381 5.381 16 C 0.044 3.956 17 C 0.052 3.948 18 C -0.178 4.178 19 C -0.177 4.177 20 C -0.566 4.566 21 H 0.062 0.938 22 C -0.172 4.172 23 N -0.538 5.538 24 Si 0.772 3.228 25 H -0.201 1.201 26 H -0.207 1.207 27 H -0.207 1.207 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.142 0.858 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.063 0.937 40 H 0.247 0.753 41 H 0.242 0.758 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.055 0.945 45 H 0.081 0.919 46 H 0.036 0.964 47 H 0.037 0.963 48 H 0.081 0.919 49 H 0.056 0.944 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.254 -4.172 -24.530 25.243 hybrid contribution -0.067 -0.448 1.476 1.544 sum -4.321 -4.619 -23.054 23.906 Atomic orbital electron populations 1.21752 0.92844 1.02365 1.02800 1.22358 0.96744 1.00169 0.91845 0.88120 1.23473 0.88449 0.98947 0.98158 1.64798 1.23990 1.31126 1.01199 1.23091 0.98312 0.90233 0.99798 1.23392 1.02759 1.02141 0.91872 1.23405 1.02880 0.96579 1.02969 1.23238 0.98593 0.98388 0.89560 1.21723 0.94921 0.91400 0.86709 0.90855 1.45015 1.73382 1.15086 1.04394 1.16213 0.78093 0.84461 0.81530 1.90855 1.59018 1.19185 1.83281 1.45198 1.71867 1.13968 1.07050 1.21098 0.98467 0.97142 0.78850 1.18351 0.92999 0.91152 0.92316 1.21665 0.97529 1.00485 0.98100 1.21659 0.97073 1.00310 0.98696 1.21298 1.45791 0.96463 0.93014 0.93812 1.25446 0.94859 0.95105 1.01767 1.69908 1.46158 1.04564 1.33175 0.85710 0.77558 0.78319 0.81234 1.20069 1.20718 1.20678 0.92881 0.90066 0.92657 0.92364 0.87790 0.85829 0.87293 0.86867 0.87927 0.89648 0.91651 0.93729 0.75333 0.75824 0.94725 0.94871 0.94470 0.91872 0.96436 0.96337 0.91904 0.94404 0.93032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.17 71.98 0.66 -1.20 16 2 C -0.09 -1.39 3.36 -9.59 -0.03 -1.42 16 3 H 0.10 1.37 7.74 -2.39 -0.02 1.35 16 4 C 0.04 0.52 4.52 86.65 0.39 0.92 16 5 N -0.49 -9.15 5.54 -857.83 -4.75 -13.90 16 6 C 0.00 -0.08 6.32 44.92 0.28 0.20 16 7 C -0.16 -1.95 9.57 30.59 0.29 -1.66 16 8 C -0.22 -3.32 8.86 30.59 0.27 -3.05 16 9 C 0.03 0.74 6.38 86.45 0.55 1.29 16 10 C 0.16 3.62 2.87 45.87 0.13 3.75 16 11 H 0.07 2.01 7.36 -2.38 -0.02 1.99 16 12 N -0.72 -18.17 5.03 -453.62 -2.28 -20.46 16 13 C 0.70 24.55 8.56 179.06 1.53 26.08 16 14 O -0.64 -28.24 16.04 -4.01 -0.06 -28.31 16 15 N -0.73 -25.65 4.96 -478.52 -2.37 -28.03 16 16 C 0.17 7.39 4.50 86.38 0.39 7.78 16 17 C 0.05 2.45 0.50 -52.93 -0.03 2.43 16 18 C -0.12 -5.39 8.07 71.98 0.58 -4.81 16 19 C -0.12 -5.33 8.08 71.98 0.58 -4.75 16 20 C -0.53 -28.19 8.01 25.60 0.21 -27.99 16 21 H 0.04 2.40 7.74 -2.91 -0.02 2.38 16 22 C 0.03 1.48 5.15 84.66 0.44 1.92 16 23 N -0.90 -48.14 9.35 21.45 0.20 -47.94 16 24 Si 0.94 42.96 29.54 68.60 2.03 44.99 16 25 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.05 0.76 8.11 -2.39 -0.02 0.74 16 31 H 0.06 0.78 5.65 -2.39 -0.01 0.77 16 32 H 0.10 1.16 8.06 -2.39 -0.02 1.14 16 33 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.11 1.12 6.09 -2.39 -0.01 1.10 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.09 1.45 7.19 -2.39 -0.02 1.43 16 38 H 0.07 1.82 7.92 -2.39 -0.02 1.80 16 39 H 0.04 1.14 6.72 -2.38 -0.02 1.13 16 40 H 0.41 7.94 8.36 -92.71 -0.78 7.16 16 41 H 0.41 12.32 6.18 -92.71 -0.57 11.74 16 42 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.03 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.04 1.39 6.86 -2.38 -0.02 1.38 16 45 H 0.06 3.14 6.07 -2.38 -0.01 3.13 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.06 3.11 6.07 -2.39 -0.01 3.09 16 49 H 0.04 1.40 6.86 -2.39 -0.02 1.38 16 50 H 0.26 13.36 8.31 -92.71 -0.77 12.59 16 Total: -1.00 -63.33 380.27 -1.41 -64.73 By element: Atomic # 1 Polarization: 29.82 SS G_CDS: -0.41 Total: 29.41 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 6.25 Total: -0.50 kcal Atomic # 7 Polarization: -101.12 SS G_CDS: -9.21 Total: -110.32 kcal Atomic # 8 Polarization: -28.24 SS G_CDS: -0.06 Total: -28.31 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.99 kcal Total: -63.33 -1.41 -64.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458571735.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.185 kcal (2) G-P(sol) polarization free energy of solvation -63.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds