Wall clock time and date at job start Tue Mar 31 2020 09:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46895 * 109.47429 * 2 1 4 4 C 1.48539 * 110.99912 * 287.39352 * 3 2 1 5 5 C 1.55105 * 103.28232 * 200.33205 * 4 3 2 6 6 C 1.54592 * 102.84584 * 37.30642 * 5 4 3 7 7 H 1.09007 * 110.31060 * 97.11376 * 6 5 4 8 8 N 1.46500 * 110.30804 * 219.18362 * 6 5 4 9 9 C 1.34783 * 120.00101 * 272.21237 * 8 6 5 10 10 O 1.21590 * 119.99858 * 5.07094 * 9 8 6 11 11 N 1.34770 * 120.00051 * 185.07671 * 9 8 6 12 12 C 1.46924 * 120.62984 * 174.96299 * 11 9 8 13 13 C 1.53198 * 108.77814 * 233.58562 * 12 11 9 14 14 C 1.53046 * 109.30857 * 305.36481 * 13 12 11 15 15 C 1.53001 * 109.45703 * 181.38280 * 14 13 12 16 16 C 1.50701 * 109.47158 * 175.00420 * 15 14 13 17 17 H 1.07995 * 119.99515 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00148 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99877 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00038 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47018 * 90.00024 * 20 18 16 22 22 H 1.48496 * 109.47293 * 210.00149 * 20 18 16 23 23 H 1.48504 * 109.46899 * 330.00072 * 20 18 16 24 24 C 1.53039 * 109.53743 * 61.36760 * 14 13 12 25 25 C 1.46922 * 120.63138 * 354.93903 * 11 9 8 26 26 C 1.47900 * 111.00201 * 169.99718 * 3 2 1 27 27 H 1.08999 * 109.46626 * 59.99895 * 1 2 3 28 28 H 1.09001 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47525 * 300.00705 * 1 2 3 30 30 H 1.08999 * 109.47525 * 239.99295 * 2 1 3 31 31 H 1.09012 * 109.46985 * 119.99616 * 2 1 3 32 32 H 1.08998 * 110.66689 * 318.71087 * 4 3 2 33 33 H 1.08997 * 110.66483 * 81.68091 * 4 3 2 34 34 H 1.08993 * 110.71021 * 278.99282 * 5 4 3 35 35 H 1.09002 * 110.80775 * 155.66226 * 5 4 3 36 36 H 0.96996 * 120.00150 * 92.20855 * 8 6 5 37 37 H 1.09000 * 109.59238 * 113.79750 * 12 11 9 38 38 H 1.08998 * 109.70761 * 353.44037 * 12 11 9 39 39 H 1.08997 * 109.49893 * 185.41613 * 13 12 11 40 40 H 1.09002 * 109.49691 * 65.31320 * 13 12 11 41 41 H 1.08992 * 109.45847 * 301.34002 * 14 13 12 42 42 H 1.09009 * 109.47096 * 295.00139 * 15 14 13 43 43 H 1.08998 * 109.46933 * 54.99857 * 15 14 13 44 44 H 0.97000 * 120.00054 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.50247 * 58.57734 * 24 14 13 46 46 H 1.08997 * 109.50042 * 178.68520 * 24 14 13 47 47 H 1.08998 * 109.58687 * 246.20100 * 25 11 9 48 48 H 1.09001 * 109.58909 * 6.63045 * 25 11 9 49 49 H 1.08998 * 109.91857 * 26.49250 * 26 3 2 50 50 H 1.08997 * 109.92158 * 265.19400 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8063 2.0250 -1.3233 5 6 2.8105 3.2070 -1.3135 6 6 4.0330 2.6133 -0.5768 7 1 4.7739 2.2621 -1.2951 8 7 4.6248 3.6140 0.3147 9 6 5.5612 4.4632 -0.1527 10 8 5.8485 4.4610 -1.3342 11 7 6.1792 5.3147 0.6895 12 6 7.2780 6.1685 0.2178 13 6 8.4921 5.9574 1.1279 14 6 8.0837 6.2047 2.5820 15 6 9.3020 6.0284 3.4906 16 6 8.9301 6.3907 4.9054 17 1 7.9255 6.7147 5.1335 18 6 9.8728 6.3096 5.9083 19 7 9.5483 6.6263 7.1428 20 14 11.6107 5.7499 5.5135 21 1 12.4437 6.9293 5.1663 22 1 12.1910 5.0652 6.6966 23 1 11.5790 4.8104 4.3639 24 6 6.9978 5.2047 2.9857 25 6 5.7667 5.4073 2.0965 26 6 3.4784 1.4313 0.2398 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0406 1.3295 -2.1293 33 1 0.7823 2.3871 -1.4148 34 1 2.4027 4.0547 -0.7631 35 1 3.0764 3.4976 -2.3299 36 1 4.3426 3.6654 1.2413 37 1 6.9707 7.2136 0.2552 38 1 7.5381 5.9006 -0.8062 39 1 9.2820 6.6546 0.8484 40 1 8.8539 4.9348 1.0205 41 1 7.6989 7.2194 2.6836 42 1 9.6336 4.9906 3.4566 43 1 10.1073 6.6785 3.1487 44 1 10.2114 6.5689 7.8484 45 1 7.3736 4.1892 2.8607 46 1 6.7239 5.3661 4.0283 47 1 5.3361 6.3903 2.2872 48 1 5.0288 4.6346 2.3126 49 1 3.9392 0.5014 -0.0930 50 1 3.6756 1.5878 1.3003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574872557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:17 Heat of formation + Delta-G solvation = -30.836834 kcal Electronic energy + Delta-G solvation = -26255.252135 eV Core-core repulsion = 22702.891164 eV Total energy + Delta-G solvation = -3552.360971 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.51174 -39.20521 -37.44260 -34.94317 -34.06476 -32.57510 -31.90433 -30.65233 -29.53050 -28.73423 -27.66558 -24.58140 -23.35846 -22.95322 -21.90252 -21.10603 -20.96706 -20.01466 -19.26688 -17.93324 -16.78651 -16.65844 -16.22360 -15.39782 -15.31018 -15.02235 -14.55090 -14.35776 -14.14081 -13.79260 -13.47489 -13.41425 -13.23228 -13.17306 -12.90781 -12.80316 -12.32583 -12.26248 -11.98477 -11.88359 -11.82869 -11.65379 -11.44437 -11.18782 -11.16054 -11.06300 -10.88609 -10.66542 -10.32419 -10.08087 -9.77836 -9.70350 -9.49046 -9.16374 -9.06902 -8.80380 -8.54793 -8.28423 -6.05829 -4.03170 2.70905 3.27821 3.29581 3.37496 3.41207 3.58929 3.91954 4.24812 4.44022 4.44164 4.73431 4.80317 4.93011 4.99159 5.04129 5.12747 5.14080 5.26701 5.28057 5.29337 5.41809 5.44937 5.46125 5.48398 5.57466 5.58478 5.64300 5.70182 5.75698 5.85580 5.90738 5.93801 6.04686 6.28102 6.30412 6.41558 6.47193 6.52363 6.59748 6.65259 6.79729 6.86178 6.96494 7.07315 7.24620 7.43820 7.78611 8.01738 8.52077 8.67669 8.98697 9.57515 11.07362 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.020131 B = 0.002691 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.563762 B =10402.120072 C =11238.522015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.040 3.960 3 N -0.516 5.516 4 C 0.035 3.965 5 C -0.133 4.133 6 C 0.157 3.843 7 H 0.092 0.908 8 N -0.740 5.740 9 C 0.708 3.292 10 O -0.600 6.600 11 N -0.623 5.623 12 C 0.131 3.869 13 C -0.133 4.133 14 C -0.071 4.071 15 C -0.010 4.010 16 C -0.515 4.515 17 H 0.073 0.927 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.878 3.122 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.119 4.119 25 C 0.110 3.890 26 C 0.029 3.971 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.398 0.602 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.014 0.986 43 H 0.011 0.989 44 H 0.262 0.738 45 H 0.057 0.943 46 H 0.089 0.911 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.056 0.944 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.828 -10.626 -15.784 24.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.088 4.088 3 N -0.241 5.241 4 C -0.093 4.093 5 C -0.173 4.173 6 C 0.051 3.949 7 H 0.110 0.890 8 N -0.399 5.399 9 C 0.410 3.590 10 O -0.479 6.479 11 N -0.359 5.359 12 C 0.008 3.992 13 C -0.171 4.171 14 C -0.090 4.090 15 C -0.047 4.047 16 C -0.553 4.553 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.158 4.158 25 C -0.013 4.013 26 C -0.100 4.100 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.236 0.764 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.033 0.967 43 H 0.030 0.970 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.107 0.893 47 H 0.086 0.914 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.813 -10.369 -16.038 24.795 hybrid contribution 1.299 -0.727 -0.054 1.489 sum -14.515 -11.097 -16.091 24.346 Atomic orbital electron populations 1.21728 0.94582 1.01489 1.02571 1.22272 0.96559 0.89009 1.00951 1.64800 1.13272 1.16851 1.29190 1.23297 1.00360 0.95798 0.89870 1.22982 0.94723 0.98089 1.01477 1.21551 0.94798 0.87164 0.91435 0.88973 1.45386 1.43529 1.36569 1.14376 1.15826 0.79212 0.79123 0.84826 1.90871 1.68898 1.73365 1.14750 1.47340 1.36829 1.41804 1.09968 1.21499 0.85740 0.93083 0.98837 1.22088 0.96677 1.01994 0.96374 1.20988 0.97015 0.98465 0.92525 1.19622 0.93218 0.96416 0.95430 1.21134 0.99021 1.44700 0.90481 0.90849 1.25028 0.98633 0.94886 0.94993 1.69910 1.34745 1.49270 1.00421 0.86814 0.85284 0.79388 0.77985 1.20377 1.21520 1.19081 1.21904 0.94193 0.99785 0.99874 1.21800 0.97772 1.01380 0.80332 1.23128 0.88168 0.97322 1.01375 0.92784 0.92354 0.91755 0.94573 0.90706 0.93563 0.89802 0.90231 0.90364 0.76390 0.91977 0.89618 0.91122 0.92147 0.91730 0.96726 0.97032 0.92805 0.92380 0.89253 0.91353 0.91354 0.92566 0.89429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.00 37.15 0.37 -0.53 16 2 C 0.04 0.28 5.42 -3.83 -0.02 0.26 16 3 N -0.52 -4.34 5.25 -230.34 -1.21 -5.55 16 4 C 0.03 0.27 5.92 -1.80 -0.01 0.26 16 5 C -0.13 -1.27 6.79 -24.78 -0.17 -1.44 16 6 C 0.16 1.62 3.27 -66.58 -0.22 1.40 16 7 H 0.09 1.09 7.68 -51.93 -0.40 0.69 16 8 N -0.74 -8.62 4.98 -57.35 -0.29 -8.90 16 9 C 0.71 10.62 8.29 -86.92 -0.72 9.90 16 10 O -0.60 -10.85 15.51 5.29 0.08 -10.77 16 11 N -0.62 -8.99 2.97 -178.49 -0.53 -9.52 16 12 C 0.13 1.91 6.41 -3.71 -0.02 1.89 16 13 C -0.13 -2.10 5.36 -26.61 -0.14 -2.24 16 14 C -0.07 -1.30 2.10 -90.58 -0.19 -1.49 16 15 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 16 C -0.52 -13.95 8.94 -34.44 -0.31 -14.26 16 17 H 0.07 2.11 7.30 -52.49 -0.38 1.72 16 18 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 19 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 20 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 24 C -0.12 -1.97 5.19 -26.61 -0.14 -2.11 16 25 C 0.11 1.46 6.43 -3.71 -0.02 1.43 16 26 C 0.03 0.25 6.43 -2.75 -0.02 0.23 16 27 H 0.05 0.33 7.36 -51.93 -0.38 -0.05 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.24 7.83 -51.93 -0.41 -0.16 16 31 H 0.07 0.51 8.08 -51.92 -0.42 0.09 16 32 H 0.05 0.34 7.81 -51.93 -0.41 -0.06 16 33 H 0.08 0.61 7.80 -51.93 -0.40 0.21 16 34 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 35 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.40 4.03 5.78 -40.82 -0.24 3.79 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.30 7.04 -51.93 -0.37 0.93 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.01 0.34 7.20 -51.92 -0.37 -0.03 16 43 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 46 H 0.09 1.63 6.91 -51.93 -0.36 1.28 16 47 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.07 0.74 5.57 -51.93 -0.29 0.45 16 49 H 0.06 0.45 7.77 -51.93 -0.40 0.04 16 50 H 0.09 0.75 7.63 -51.93 -0.40 0.35 16 LS Contribution 379.43 15.07 5.72 5.72 Total: -1.00 -31.63 379.43 -10.93 -42.56 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -9.01 Total: 1.42 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: -1.81 Total: -5.25 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -1.25 Total: -50.49 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.08 Total: -10.77 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -31.63 -10.93 -42.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574872557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.726 kcal (2) G-P(sol) polarization free energy of solvation -31.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds