Wall clock time and date at job start Tue Mar 31 2020 09:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46895 * 109.47429 * 2 1 4 4 C 1.48539 * 110.99912 * 287.39352 * 3 2 1 5 5 C 1.55105 * 103.28232 * 200.33205 * 4 3 2 6 6 C 1.54592 * 102.84584 * 37.30642 * 5 4 3 7 7 H 1.09007 * 110.31060 * 97.11376 * 6 5 4 8 8 N 1.46500 * 110.30804 * 219.18362 * 6 5 4 9 9 C 1.34783 * 120.00101 * 272.21237 * 8 6 5 10 10 O 1.21590 * 119.99858 * 5.07094 * 9 8 6 11 11 N 1.34770 * 120.00051 * 185.07671 * 9 8 6 12 12 C 1.46924 * 120.62984 * 174.96299 * 11 9 8 13 13 C 1.53198 * 108.77814 * 233.58562 * 12 11 9 14 14 C 1.53046 * 109.30857 * 305.36481 * 13 12 11 15 15 C 1.53001 * 109.45703 * 181.38280 * 14 13 12 16 16 C 1.50701 * 109.47158 * 175.00420 * 15 14 13 17 17 H 1.07995 * 119.99515 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00148 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99877 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00038 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.47018 * 90.00024 * 20 18 16 22 22 H 1.48496 * 109.47293 * 210.00149 * 20 18 16 23 23 H 1.48504 * 109.46899 * 330.00072 * 20 18 16 24 24 C 1.53039 * 109.53743 * 61.36760 * 14 13 12 25 25 C 1.46922 * 120.63138 * 354.93903 * 11 9 8 26 26 C 1.47900 * 111.00201 * 169.99718 * 3 2 1 27 27 H 1.08999 * 109.46626 * 59.99895 * 1 2 3 28 28 H 1.09001 * 109.47413 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47525 * 300.00705 * 1 2 3 30 30 H 1.08999 * 109.47525 * 239.99295 * 2 1 3 31 31 H 1.09012 * 109.46985 * 119.99616 * 2 1 3 32 32 H 1.08998 * 110.66689 * 318.71087 * 4 3 2 33 33 H 1.08997 * 110.66483 * 81.68091 * 4 3 2 34 34 H 1.08993 * 110.71021 * 278.99282 * 5 4 3 35 35 H 1.09002 * 110.80775 * 155.66226 * 5 4 3 36 36 H 0.96996 * 120.00150 * 92.20855 * 8 6 5 37 37 H 1.09000 * 109.59238 * 113.79750 * 12 11 9 38 38 H 1.08998 * 109.70761 * 353.44037 * 12 11 9 39 39 H 1.08997 * 109.49893 * 185.41613 * 13 12 11 40 40 H 1.09002 * 109.49691 * 65.31320 * 13 12 11 41 41 H 1.08992 * 109.45847 * 301.34002 * 14 13 12 42 42 H 1.09009 * 109.47096 * 295.00139 * 15 14 13 43 43 H 1.08998 * 109.46933 * 54.99857 * 15 14 13 44 44 H 0.97000 * 120.00054 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.50247 * 58.57734 * 24 14 13 46 46 H 1.08997 * 109.50042 * 178.68520 * 24 14 13 47 47 H 1.08998 * 109.58687 * 246.20100 * 25 11 9 48 48 H 1.09001 * 109.58909 * 6.63045 * 25 11 9 49 49 H 1.08998 * 109.91857 * 26.49250 * 26 3 2 50 50 H 1.08997 * 109.92158 * 265.19400 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8063 2.0250 -1.3233 5 6 2.8105 3.2070 -1.3135 6 6 4.0330 2.6133 -0.5768 7 1 4.7739 2.2621 -1.2951 8 7 4.6248 3.6140 0.3147 9 6 5.5612 4.4632 -0.1527 10 8 5.8485 4.4610 -1.3342 11 7 6.1792 5.3147 0.6895 12 6 7.2780 6.1685 0.2178 13 6 8.4921 5.9574 1.1279 14 6 8.0837 6.2047 2.5820 15 6 9.3020 6.0284 3.4906 16 6 8.9301 6.3907 4.9054 17 1 7.9255 6.7147 5.1335 18 6 9.8728 6.3096 5.9083 19 7 9.5483 6.6263 7.1428 20 14 11.6107 5.7499 5.5135 21 1 12.4437 6.9293 5.1663 22 1 12.1910 5.0652 6.6966 23 1 11.5790 4.8104 4.3639 24 6 6.9978 5.2047 2.9857 25 6 5.7667 5.4073 2.0965 26 6 3.4784 1.4313 0.2398 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 2.0406 1.3295 -2.1293 33 1 0.7823 2.3871 -1.4148 34 1 2.4027 4.0547 -0.7631 35 1 3.0764 3.4976 -2.3299 36 1 4.3426 3.6654 1.2413 37 1 6.9707 7.2136 0.2552 38 1 7.5381 5.9006 -0.8062 39 1 9.2820 6.6546 0.8484 40 1 8.8539 4.9348 1.0205 41 1 7.6989 7.2194 2.6836 42 1 9.6336 4.9906 3.4566 43 1 10.1073 6.6785 3.1487 44 1 10.2114 6.5689 7.8484 45 1 7.3736 4.1892 2.8607 46 1 6.7239 5.3661 4.0283 47 1 5.3361 6.3903 2.2872 48 1 5.0288 4.6346 2.3126 49 1 3.9392 0.5014 -0.0930 50 1 3.6756 1.5878 1.3003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574872557.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:17 Heat of formation + Delta-G solvation = -51.215914 kcal Electronic energy + Delta-G solvation = -26256.135838 eV Core-core repulsion = 22702.891164 eV Total energy + Delta-G solvation = -3553.244674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.59428 -40.04358 -38.70736 -35.86516 -35.65377 -34.12500 -33.07697 -31.82872 -30.31661 -30.17832 -28.59702 -26.13307 -24.23986 -23.92644 -23.36626 -21.98708 -21.72001 -21.31768 -20.52659 -19.14840 -18.74827 -17.67358 -16.95602 -16.46898 -16.34649 -16.24403 -15.66211 -15.49075 -15.34635 -15.14043 -14.89991 -14.49248 -14.40085 -14.16963 -14.09687 -13.81939 -13.59204 -13.46175 -13.07049 -12.94443 -12.85136 -12.54303 -12.44233 -12.39725 -12.28994 -12.12998 -11.98720 -11.86329 -11.72703 -11.68954 -11.35900 -11.28278 -11.02599 -10.90612 -10.70172 -10.20845 -9.47560 -9.39919 -8.24346 -6.25496 1.36136 1.38231 1.48982 1.64822 2.12427 2.38478 2.84855 3.01523 3.11507 3.51632 3.74272 3.90351 3.99696 4.05816 4.09063 4.20984 4.22198 4.25859 4.31292 4.41189 4.44623 4.53330 4.62597 4.65715 4.68243 4.75506 4.81486 4.85476 4.90712 4.95813 4.98830 4.99722 5.08046 5.10185 5.15849 5.19895 5.24912 5.35368 5.37162 5.43109 5.56781 5.62886 5.74824 5.76026 5.85515 5.99472 6.06676 6.35862 6.82086 6.94520 7.38370 7.54507 8.91784 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.020131 B = 0.002691 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.563762 B =10402.120072 C =11238.522015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.038 3.962 3 N -0.525 5.525 4 C 0.041 3.959 5 C -0.129 4.129 6 C 0.154 3.846 7 H 0.077 0.923 8 N -0.728 5.728 9 C 0.705 3.295 10 O -0.632 6.632 11 N -0.624 5.624 12 C 0.135 3.865 13 C -0.122 4.122 14 C -0.069 4.069 15 C -0.008 4.008 16 C -0.513 4.513 17 H 0.043 0.957 18 C 0.004 3.996 19 N -0.951 5.951 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.251 1.251 24 C -0.114 4.114 25 C 0.119 3.881 26 C 0.035 3.965 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.041 0.959 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.407 0.593 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.060 0.940 42 H 0.012 0.988 43 H 0.014 0.986 44 H 0.263 0.737 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.095 0.905 49 H 0.064 0.936 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.244 -11.695 -17.142 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.090 4.090 3 N -0.250 5.250 4 C -0.087 4.087 5 C -0.169 4.169 6 C 0.048 3.952 7 H 0.095 0.905 8 N -0.387 5.387 9 C 0.407 3.593 10 O -0.514 6.514 11 N -0.361 5.361 12 C 0.012 3.988 13 C -0.161 4.161 14 C -0.088 4.088 15 C -0.045 4.045 16 C -0.551 4.551 17 H 0.062 0.938 18 C -0.193 4.193 19 N -0.593 5.593 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.175 1.175 24 C -0.152 4.152 25 C -0.003 4.003 26 C -0.093 4.093 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.246 0.754 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.032 0.968 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.096 0.904 48 H 0.113 0.887 49 H 0.082 0.918 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -16.256 -11.452 -17.395 26.420 hybrid contribution 1.354 -0.383 0.391 1.460 sum -14.903 -11.835 -17.005 25.521 Atomic orbital electron populations 1.21703 0.93949 1.02183 1.02195 1.22334 0.97062 0.88230 1.01329 1.64829 1.12933 1.17862 1.29400 1.23263 1.00237 0.95166 0.90000 1.22900 0.94759 0.98497 1.00725 1.21631 0.94628 0.87508 0.91406 0.90522 1.45330 1.42533 1.35858 1.14933 1.15970 0.79595 0.79330 0.84405 1.90849 1.70065 1.74313 1.16209 1.47366 1.36789 1.41708 1.10193 1.21449 0.85313 0.93865 0.98181 1.21966 0.97611 1.01910 0.94580 1.20910 0.95716 0.98772 0.93381 1.19590 0.95246 0.95915 0.93756 1.21458 0.97671 1.43280 0.92733 0.93847 1.25915 1.03125 0.95407 0.94819 1.70055 1.36276 1.51353 1.01611 0.85790 0.80077 0.79385 0.78156 1.19526 1.21427 1.17490 1.21775 0.95207 0.98936 0.99308 1.21750 0.96602 1.02977 0.78998 1.23063 0.88441 0.96697 1.01136 0.92726 0.91176 0.92514 0.94083 0.90424 0.92875 0.89012 0.90918 0.91162 0.75380 0.90665 0.89964 0.90020 0.92759 0.92199 0.96995 0.96779 0.92790 0.92832 0.91531 0.90417 0.88672 0.91787 0.89172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 10.00 71.98 0.72 -0.76 16 2 C 0.04 0.46 5.42 86.30 0.47 0.93 16 3 N -0.53 -7.81 5.25 -882.67 -4.63 -12.44 16 4 C 0.04 0.58 5.92 86.71 0.51 1.09 16 5 C -0.13 -2.32 6.79 31.86 0.22 -2.11 16 6 C 0.15 3.00 3.27 45.87 0.15 3.15 16 7 H 0.08 1.76 7.68 -2.38 -0.02 1.74 16 8 N -0.73 -15.83 4.98 -453.60 -2.26 -18.09 16 9 C 0.71 20.18 8.29 179.05 1.48 21.66 16 10 O -0.63 -22.39 15.51 -4.00 -0.06 -22.45 16 11 N -0.62 -16.95 2.97 -836.90 -2.49 -19.43 16 12 C 0.13 3.70 6.41 86.36 0.55 4.25 16 13 C -0.12 -3.66 5.36 30.68 0.16 -3.49 16 14 C -0.07 -2.47 2.10 -10.76 -0.02 -2.49 16 15 C -0.01 -0.34 3.52 29.85 0.10 -0.24 16 16 C -0.51 -28.14 8.94 25.60 0.23 -27.91 16 17 H 0.04 2.58 7.30 -2.91 -0.02 2.55 16 18 C 0.00 0.21 5.47 84.65 0.46 0.67 16 19 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 20 Si 0.94 44.03 27.47 68.60 1.88 45.92 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.25 -11.03 6.54 99.48 0.65 -10.38 16 24 C -0.11 -3.68 5.19 30.67 0.16 -3.52 16 25 C 0.12 2.94 6.43 86.37 0.56 3.50 16 26 C 0.04 0.54 6.43 86.45 0.56 1.10 16 27 H 0.05 0.56 7.36 -2.39 -0.02 0.54 16 28 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.04 0.46 7.83 -2.39 -0.02 0.44 16 31 H 0.08 0.89 8.08 -2.38 -0.02 0.87 16 32 H 0.05 0.69 7.81 -2.39 -0.02 0.67 16 33 H 0.09 1.17 7.80 -2.39 -0.02 1.15 16 34 H 0.07 1.41 8.06 -2.39 -0.02 1.39 16 35 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.41 7.35 5.78 -92.71 -0.54 6.81 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.08 2.37 7.04 -2.39 -0.02 2.35 16 39 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.01 0.53 7.20 -2.38 -0.02 0.52 16 43 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 44 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 45 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 46 H 0.07 2.46 6.91 -2.39 -0.02 2.45 16 47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.10 1.84 5.57 -2.39 -0.01 1.82 16 49 H 0.06 0.90 7.77 -2.39 -0.02 0.88 16 50 H 0.09 1.35 7.63 -2.39 -0.02 1.33 16 Total: -1.00 -68.25 379.43 -0.63 -68.88 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: 0.31 Total: 20.13 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 6.32 Total: -4.17 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -9.08 Total: -108.30 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.06 Total: -22.45 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 1.88 Total: 45.92 kcal Total: -68.25 -0.63 -68.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574872557.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.662 kcal (2) G-P(sol) polarization free energy of solvation -68.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds