Wall clock time and date at job start Tue Mar 31 2020 10:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46972 * 2 1 4 4 C 1.52998 * 109.46972 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47073 * 294.99800 * 4 3 2 6 6 C 1.52998 * 109.47073 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47155 * 59.99941 * 6 5 4 8 8 N 1.46506 * 109.46826 * 60.00406 * 7 6 5 9 9 C 1.46505 * 119.99554 * 239.19278 * 8 7 6 10 10 C 1.34772 * 120.00061 * 59.19047 * 8 7 6 11 11 O 1.21279 * 120.00469 * 0.02562 * 10 8 7 12 12 C 1.50706 * 119.99653 * 180.02562 * 10 8 7 13 13 C 1.52999 * 109.47055 * 179.97438 * 12 10 8 14 14 C 1.52995 * 109.47116 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47116 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47413 * 179.97438 * 15 14 13 17 17 H 1.07998 * 119.99939 * 359.97438 * 16 15 14 18 18 C 1.37874 * 120.00392 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99689 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00195 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47239 * 60.00189 * 20 18 16 22 22 H 1.48502 * 109.47415 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47274 * 299.99699 * 20 18 16 24 24 C 1.52995 * 109.47520 * 300.00279 * 7 6 5 25 25 C 1.52998 * 109.47135 * 59.99708 * 24 7 6 26 26 H 1.09006 * 109.47048 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.47338 * 299.99927 * 1 2 3 28 28 H 1.08999 * 109.47575 * 60.00135 * 1 2 3 29 29 H 1.09000 * 109.47223 * 239.99825 * 2 1 3 30 30 H 1.09003 * 109.46887 * 120.00070 * 2 1 3 31 31 H 1.09000 * 109.47290 * 59.99865 * 3 2 1 32 32 H 1.08997 * 109.47376 * 300.00239 * 3 2 1 33 33 H 1.08996 * 109.47120 * 55.00101 * 4 3 2 34 34 H 1.08996 * 109.47394 * 300.00134 * 5 4 3 35 35 H 1.08998 * 109.46863 * 60.00321 * 5 4 3 36 36 H 1.09005 * 109.47242 * 300.00585 * 6 5 4 37 37 H 1.09003 * 109.47242 * 180.02562 * 6 5 4 38 38 H 1.08999 * 109.47131 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.47449 * 95.91896 * 9 8 7 40 40 H 1.09008 * 109.46691 * 215.91684 * 9 8 7 41 41 H 1.09003 * 109.47230 * 335.91321 * 9 8 7 42 42 H 1.08992 * 109.47155 * 299.99776 * 12 10 8 43 43 H 1.09005 * 109.47309 * 59.99901 * 12 10 8 44 44 H 1.09005 * 109.47199 * 300.00278 * 13 12 10 45 45 H 1.09005 * 109.46970 * 59.99905 * 13 12 10 46 46 H 1.09000 * 109.47098 * 299.99651 * 14 13 12 47 47 H 1.08999 * 109.47769 * 59.99804 * 14 13 12 48 48 H 1.08997 * 109.47476 * 300.00178 * 15 14 13 49 49 H 1.09005 * 109.46970 * 59.99754 * 15 14 13 50 50 H 0.97001 * 119.99959 * 179.97438 * 19 18 16 51 51 H 1.08996 * 109.46991 * 299.99783 * 24 7 6 52 52 H 1.09000 * 109.47482 * 180.02562 * 24 7 6 53 53 H 1.08995 * 109.47042 * 180.02562 * 25 24 7 54 54 H 1.08996 * 109.47120 * 60.00154 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0805 0.8327 1.3064 6 6 5.6105 0.8321 1.3055 7 6 6.1209 2.2689 1.1794 8 7 5.6336 3.0613 2.3112 9 6 4.8063 4.2468 2.0732 10 6 5.9464 2.6998 3.5713 11 8 6.6316 1.7187 3.7684 12 6 5.4445 3.5147 4.7355 13 6 5.9380 2.8930 6.0435 14 6 5.4280 3.7199 7.2255 15 6 5.9209 3.0978 8.5335 16 6 5.4192 3.9126 9.6978 17 1 4.8100 4.7869 9.5223 18 6 5.7386 3.5425 10.9869 19 7 6.4809 2.4780 11.2006 20 14 5.1173 4.5529 12.4299 21 1 3.6324 4.5701 12.4192 22 1 5.5956 3.9490 13.6995 23 1 5.6293 5.9423 12.3183 24 6 5.6104 2.8788 -0.1275 25 6 4.0804 2.8794 -0.1266 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9329 0.8532 -0.8427 34 1 3.7175 1.4220 2.1485 35 1 3.7172 -0.1910 1.3960 36 1 5.9731 0.2426 0.4634 37 1 5.9742 0.3973 2.2365 38 1 7.2109 2.2685 1.1792 39 1 3.7534 3.9788 2.1614 40 1 5.0491 5.0131 2.8094 41 1 5.0009 4.6305 1.0716 42 1 5.8196 4.5347 4.6535 43 1 4.3546 3.5266 4.7278 44 1 5.5626 1.8729 6.1253 45 1 7.0279 2.8807 6.0515 46 1 5.8031 4.7400 7.1439 47 1 4.3381 3.7318 7.2173 48 1 5.5456 2.0777 8.6149 49 1 7.0109 3.0856 8.5419 50 1 6.7059 2.2178 12.1075 51 1 5.9730 2.2892 -0.9695 52 1 5.9745 3.9022 -0.2176 53 1 3.7167 3.3134 -1.0579 54 1 3.7178 3.4689 0.7154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588716459.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:17:06 Heat of formation + Delta-G solvation = -91.321459 kcal Electronic energy + Delta-G solvation = -26533.896698 eV Core-core repulsion = 23082.453260 eV Total energy + Delta-G solvation = -3451.443438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.72338 -39.47104 -36.83707 -36.52793 -34.81256 -34.36826 -32.27692 -31.78916 -30.87941 -27.97994 -27.58707 -26.21787 -24.34718 -23.79847 -22.76029 -21.85247 -21.36918 -20.82657 -19.65335 -18.42041 -17.74768 -17.26655 -16.95550 -16.52634 -16.35423 -15.94880 -15.67617 -15.14309 -14.94277 -14.75956 -14.52792 -14.30838 -14.07199 -13.79843 -13.70706 -13.59120 -13.48346 -13.25959 -13.12166 -12.85439 -12.79350 -12.64967 -12.43814 -12.35957 -12.30065 -12.14461 -12.11961 -11.95122 -11.82486 -11.48685 -11.38671 -11.34670 -11.18454 -11.06988 -10.93863 -10.87633 -10.54777 -10.40080 -9.52475 -8.18677 -6.31208 1.39983 1.44365 1.52181 1.69791 2.07807 2.41993 3.13780 3.56687 3.73839 3.80657 3.88387 4.03467 4.11327 4.11733 4.14883 4.27423 4.31536 4.34018 4.44952 4.55602 4.59177 4.59722 4.63078 4.64763 4.69297 4.77024 4.79996 4.85400 4.86210 4.90193 4.94754 4.97507 5.04582 5.13491 5.17323 5.17854 5.20033 5.26717 5.30508 5.31788 5.34562 5.36750 5.39874 5.44648 5.54626 5.55855 5.62671 5.77136 5.79485 5.87336 6.24825 6.46185 6.86972 7.27574 7.38381 8.93515 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.017103 B = 0.002403 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.790384 B =11650.280493 C =12410.544868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.079 4.079 5 C -0.103 4.103 6 C -0.137 4.137 7 C 0.148 3.852 8 N -0.604 5.604 9 C 0.058 3.942 10 C 0.507 3.493 11 O -0.584 6.584 12 C -0.126 4.126 13 C -0.094 4.094 14 C -0.094 4.094 15 C 0.019 3.981 16 C -0.542 4.542 17 H 0.067 0.933 18 C -0.008 4.008 19 N -0.939 5.939 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.285 1.285 23 H -0.264 1.264 24 C -0.116 4.116 25 C -0.139 4.139 26 H 0.052 0.948 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.105 0.895 42 H 0.115 0.885 43 H 0.112 0.888 44 H 0.039 0.961 45 H 0.041 0.959 46 H 0.061 0.939 47 H 0.060 0.940 48 H -0.017 1.017 49 H -0.017 1.017 50 H 0.263 0.737 51 H 0.085 0.915 52 H 0.085 0.915 53 H 0.081 0.919 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 3.350 -31.498 33.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.146 4.146 4 C -0.097 4.097 5 C -0.141 4.141 6 C -0.175 4.175 7 C 0.045 3.955 8 N -0.337 5.337 9 C -0.083 4.083 10 C 0.296 3.704 11 O -0.464 6.464 12 C -0.166 4.166 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.018 4.018 16 C -0.580 4.580 17 H 0.085 0.915 18 C -0.205 4.205 19 N -0.579 5.579 20 Si 0.794 3.206 21 H -0.189 1.189 22 H -0.211 1.211 23 H -0.188 1.188 24 C -0.153 4.153 25 C -0.176 4.176 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.091 0.909 40 H 0.097 0.903 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.130 0.870 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.001 0.999 49 H 0.002 0.998 50 H 0.072 0.928 51 H 0.104 0.896 52 H 0.104 0.896 53 H 0.099 0.901 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.385 2.754 -31.302 32.795 hybrid contribution 0.294 -0.422 1.326 1.422 sum -9.091 2.332 -29.976 31.411 Atomic orbital electron populations 1.21779 0.95667 1.01643 1.01916 1.21587 0.96030 0.97402 1.01569 1.21601 0.94441 0.96440 1.02165 1.21119 0.95088 0.96959 0.96578 1.21466 0.94200 1.00253 0.98140 1.21897 0.96926 0.96752 1.01953 1.21033 0.97171 0.90856 0.86470 1.47983 1.52122 1.28832 1.04770 1.22475 0.94701 0.86343 1.04772 1.21113 0.79435 0.84828 0.84999 1.90651 1.40514 1.29588 1.85689 1.21689 1.03484 1.00495 0.90907 1.21226 0.99769 0.98607 0.93582 1.21434 1.00039 0.98624 0.93054 1.19049 0.94448 0.94802 0.93486 1.21720 1.32172 1.11966 0.92138 0.91519 1.26115 0.95315 0.96430 1.02616 1.70133 1.38953 1.27003 1.21817 0.85422 0.79048 0.78806 0.77289 1.18865 1.21074 1.18820 1.21791 0.96922 1.01933 0.94695 1.22253 0.94256 0.96748 1.04340 0.92910 0.93106 0.92068 0.91925 0.93136 0.92531 0.90862 0.91242 0.93622 0.92911 0.90599 0.93579 0.92871 0.90873 0.90302 0.87637 0.86663 0.87018 0.94211 0.94048 0.92043 0.92157 0.99853 0.99815 0.92845 0.89634 0.89614 0.90086 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.91 71.98 0.71 -1.11 16 2 C -0.13 -1.67 5.69 30.59 0.17 -1.49 16 3 C -0.11 -1.26 4.68 30.59 0.14 -1.11 16 4 C -0.08 -0.98 2.19 -10.79 -0.02 -1.00 16 5 C -0.10 -1.93 4.80 30.59 0.15 -1.78 16 6 C -0.14 -2.99 5.23 30.59 0.16 -2.83 16 7 C 0.15 2.80 2.95 44.99 0.13 2.93 16 8 N -0.60 -12.10 2.25 -822.56 -1.85 -13.95 16 9 C 0.06 0.66 8.00 127.77 1.02 1.68 16 10 C 0.51 14.62 7.38 87.66 0.65 15.27 16 11 O -0.58 -22.61 14.03 -3.03 -0.04 -22.65 16 12 C -0.13 -3.35 4.33 29.85 0.13 -3.22 16 13 C -0.09 -3.55 4.50 30.59 0.14 -3.41 16 14 C -0.09 -3.95 5.15 30.59 0.16 -3.79 16 15 C 0.02 1.08 4.97 29.85 0.15 1.23 16 16 C -0.54 -31.87 9.11 25.60 0.23 -31.64 16 17 H 0.07 3.66 7.74 -2.91 -0.02 3.63 16 18 C -0.01 -0.46 5.46 84.65 0.46 0.01 16 19 N -0.94 -59.89 13.29 21.45 0.28 -59.61 16 20 Si 0.97 45.20 29.54 68.60 2.03 47.22 16 21 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 23 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 24 C -0.12 -1.23 4.91 30.59 0.15 -1.08 16 25 C -0.14 -1.28 4.55 30.60 0.14 -1.14 16 26 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.05 0.79 6.57 -2.39 -0.02 0.78 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.04 0.99 7.61 -2.39 -0.02 0.97 16 35 H 0.05 1.05 6.57 -2.39 -0.02 1.04 16 36 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.05 1.40 6.11 -2.39 -0.01 1.39 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 0.71 6.70 -2.39 -0.02 0.69 16 40 H 0.08 0.78 6.69 -2.38 -0.02 0.77 16 41 H 0.11 0.72 4.95 -2.39 -0.01 0.71 16 42 H 0.12 2.46 7.41 -2.39 -0.02 2.45 16 43 H 0.11 2.45 8.11 -2.38 -0.02 2.43 16 44 H 0.04 1.66 8.10 -2.38 -0.02 1.64 16 45 H 0.04 1.71 8.10 -2.38 -0.02 1.69 16 46 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 47 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 48 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 49 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 50 H 0.26 15.73 8.31 -92.71 -0.77 14.95 16 51 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.09 0.68 6.89 -2.39 -0.02 0.66 16 53 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 54 H 0.09 0.81 3.66 -2.39 -0.01 0.80 16 Total: -1.00 -75.81 399.89 5.92 -69.89 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: 0.83 Total: 11.59 kcal Atomic # 6 Polarization: -37.17 SS G_CDS: 4.67 Total: -32.50 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -1.57 Total: -73.56 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.04 Total: -22.65 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -75.81 5.92 -69.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588716459.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.433 kcal (2) G-P(sol) polarization free energy of solvation -75.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds