Wall clock time and date at job start Tue Mar 31 2020 09:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46821 * 110.98733 * 2 1 4 4 C 1.53040 * 109.51938 * 174.15580 * 3 2 1 5 5 C 1.53115 * 109.27403 * 59.18183 * 4 3 2 6 6 C 1.53116 * 109.16408 * 302.34594 * 5 4 3 7 7 H 1.09000 * 109.50564 * 297.71623 * 6 5 4 8 8 C 1.53000 * 109.53869 * 177.61857 * 6 5 4 9 9 N 1.46504 * 109.47285 * 175.17906 * 8 6 5 10 10 C 1.34779 * 120.00053 * 180.02562 * 9 8 6 11 11 O 1.21581 * 119.99800 * 354.92077 * 10 9 8 12 12 N 1.34772 * 119.99995 * 174.92599 * 10 9 8 13 13 C 1.46925 * 120.63025 * 5.02661 * 12 10 9 14 14 C 1.53191 * 108.77873 * 233.58557 * 13 12 10 15 15 C 1.53042 * 109.31419 * 305.37027 * 14 13 12 16 16 C 1.53045 * 109.53699 * 61.36000 * 15 14 13 17 17 H 1.09003 * 109.49418 * 58.58864 * 16 15 14 18 18 C 1.50697 * 109.49509 * 178.65130 * 16 15 14 19 19 H 1.08004 * 119.99954 * 0.02562 * 18 16 15 20 20 C 1.37872 * 120.00050 * 180.02562 * 18 16 15 21 21 N 1.31516 * 120.00075 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00140 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47218 * 89.99737 * 22 20 18 24 24 H 1.48501 * 109.46984 * 209.99871 * 22 20 18 25 25 H 1.48501 * 109.47248 * 329.99457 * 22 20 18 26 26 C 1.46925 * 120.63135 * 184.75165 * 12 10 9 27 27 C 1.46846 * 110.99592 * 235.78841 * 2 1 3 28 28 H 1.08994 * 109.47341 * 184.20923 * 1 2 3 29 29 H 1.09003 * 109.46926 * 304.21404 * 1 2 3 30 30 H 1.09002 * 109.46950 * 64.20987 * 1 2 3 31 31 H 1.09005 * 109.46599 * 54.14270 * 3 2 1 32 32 H 1.09003 * 109.45752 * 294.17066 * 3 2 1 33 33 H 1.08995 * 109.50297 * 299.24309 * 4 3 2 34 34 H 1.08998 * 109.53465 * 179.14217 * 4 3 2 35 35 H 1.09006 * 109.52481 * 182.43882 * 5 4 3 36 36 H 1.09000 * 109.57662 * 62.28144 * 5 4 3 37 37 H 1.09009 * 109.47035 * 295.17484 * 8 6 5 38 38 H 1.08999 * 109.47153 * 55.17351 * 8 6 5 39 39 H 0.96998 * 119.99871 * 359.97438 * 9 8 6 40 40 H 1.08999 * 109.58824 * 353.38315 * 13 12 10 41 41 H 1.09001 * 109.58182 * 113.80006 * 13 12 10 42 42 H 1.08999 * 109.49362 * 65.31928 * 14 13 12 43 43 H 1.09000 * 109.49838 * 185.41542 * 14 13 12 44 44 H 1.08994 * 109.45714 * 181.38148 * 15 14 13 45 45 H 1.09005 * 109.45545 * 301.35723 * 15 14 13 46 46 H 0.97000 * 120.00322 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.58786 * 246.20389 * 26 12 10 48 48 H 1.09004 * 109.58199 * 6.62570 * 26 12 10 49 49 H 1.09001 * 109.46501 * 65.82449 * 27 2 1 50 50 H 1.08997 * 109.46740 * 305.84782 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3708 0.0000 4 6 3.5178 1.3343 0.1469 5 6 4.1186 0.5372 -1.0142 6 6 3.5181 -0.8713 -1.0208 7 1 3.7813 -1.3835 -0.0953 8 6 4.0681 -1.6565 -2.2133 9 7 3.5834 -3.0377 -2.1540 10 6 3.9424 -3.9194 -3.1081 11 8 4.5917 -3.5474 -4.0663 12 7 3.5817 -5.2135 -2.9999 13 6 2.7057 -5.6575 -1.9071 14 6 3.3835 -6.8183 -1.1724 15 6 3.7391 -7.9155 -2.1783 16 6 4.7195 -7.3614 -3.2147 17 1 5.6154 -6.9990 -2.7106 18 6 5.0946 -8.4515 -4.1853 19 1 4.6755 -9.4407 -4.0747 20 6 5.9727 -8.1859 -5.2145 21 7 6.4827 -6.9812 -5.3495 22 14 6.4372 -9.5369 -6.4180 23 1 5.4868 -9.5316 -7.5591 24 1 7.8147 -9.3006 -6.9199 25 1 6.3794 -10.8526 -5.7318 26 6 4.0521 -6.2059 -3.9758 27 6 1.9952 -0.7708 -1.1337 28 1 -0.3634 -1.0248 0.0754 29 1 -0.3633 0.5779 0.8498 30 1 -0.3633 0.4471 -0.9253 31 1 1.5629 1.9256 0.8330 32 1 1.7320 1.8605 -0.9377 33 1 3.7810 0.8569 1.0907 34 1 3.9099 2.3512 0.1316 35 1 5.1996 0.4718 -0.8904 36 1 3.8894 1.0352 -1.9563 37 1 3.7310 -1.1926 -3.1404 38 1 5.1576 -1.6519 -2.1800 39 1 3.0047 -3.3179 -1.4277 40 1 2.5398 -4.8331 -1.2137 41 1 1.7519 -5.9911 -2.3161 42 1 4.2920 -6.4610 -0.6876 43 1 2.7035 -7.2200 -0.4211 44 1 4.1993 -8.7531 -1.6544 45 1 2.8332 -8.2548 -2.6808 46 1 7.1008 -6.7945 -6.0733 47 1 3.2060 -6.5832 -4.5500 48 1 4.7751 -5.7432 -4.6477 49 1 1.7324 -0.2709 -2.0660 50 1 1.5635 -1.7716 -1.1242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595546330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:26 Heat of formation + Delta-G solvation = -36.565256 kcal Electronic energy + Delta-G solvation = -26750.160602 eV Core-core repulsion = 23197.551228 eV Total energy + Delta-G solvation = -3552.609374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.92916 -39.13936 -36.84547 -35.11329 -33.59482 -33.07432 -31.76543 -30.91625 -29.62317 -27.12063 -26.16799 -25.00461 -24.03152 -23.05427 -21.85948 -21.61668 -20.17305 -19.81885 -18.68203 -17.51523 -16.21628 -15.92853 -15.79513 -15.63164 -14.95491 -14.73212 -14.63125 -14.40939 -14.03937 -13.68188 -13.56842 -13.32596 -13.07146 -13.05585 -12.59302 -12.56391 -12.47313 -12.31052 -12.05432 -11.87496 -11.64478 -11.28712 -10.97265 -10.88134 -10.84361 -10.69399 -10.57338 -10.48037 -10.35241 -10.19332 -9.83615 -9.38946 -9.06027 -8.90838 -8.66321 -8.62625 -8.38570 -7.58007 -5.94683 -4.03548 3.27754 3.35107 3.41108 3.43385 3.61056 3.92988 4.39442 4.47820 4.52001 4.55820 4.67756 4.80522 5.01042 5.10418 5.15442 5.20516 5.30702 5.34121 5.35506 5.48366 5.49977 5.53452 5.57355 5.58825 5.62276 5.66327 5.73740 5.83626 5.94172 5.99900 6.04071 6.18987 6.22205 6.35284 6.62723 6.70628 6.76581 6.78114 6.85362 6.89717 7.02801 7.11623 7.38891 7.55700 7.79481 7.97528 8.10662 8.45167 8.65463 9.00038 9.32430 9.61792 11.10472 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.002922 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.023275 B = 9581.048800 C =10252.362372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.054 3.946 4 C -0.116 4.116 5 C -0.114 4.114 6 C -0.095 4.095 7 H 0.085 0.915 8 C 0.146 3.854 9 N -0.757 5.757 10 C 0.700 3.300 11 O -0.585 6.585 12 N -0.623 5.623 13 C 0.116 3.884 14 C -0.133 4.133 15 C -0.110 4.110 16 C 0.040 3.960 17 H 0.028 0.972 18 C -0.521 4.521 19 H 0.058 0.942 20 C 0.062 3.938 21 N -0.879 5.879 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.130 3.870 27 C 0.061 3.939 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.024 0.976 31 H 0.073 0.927 32 H 0.032 0.968 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.390 0.610 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.263 0.737 47 H 0.038 0.962 48 H 0.121 0.879 49 H 0.036 0.964 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.896 15.332 12.891 22.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.268 5.268 3 C -0.074 4.074 4 C -0.153 4.153 5 C -0.152 4.152 6 C -0.114 4.114 7 H 0.104 0.896 8 C 0.021 3.979 9 N -0.417 5.417 10 C 0.402 3.598 11 O -0.463 6.463 12 N -0.360 5.360 13 C -0.008 4.008 14 C -0.172 4.172 15 C -0.147 4.147 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.140 4.140 21 N -0.516 5.516 22 Si 0.719 3.281 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.200 1.200 26 C 0.009 3.991 27 C -0.067 4.067 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.226 0.774 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.073 0.927 47 H 0.056 0.944 48 H 0.139 0.861 49 H 0.054 0.946 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -10.112 15.478 12.468 22.300 hybrid contribution -0.385 -0.475 -1.020 1.189 sum -10.497 15.003 11.448 21.595 Atomic orbital electron populations 1.22354 0.87243 1.02408 1.00350 1.61910 1.07559 1.13732 1.43604 1.22112 0.95830 0.89149 1.00315 1.21570 0.94226 1.00170 0.99383 1.21553 1.00441 0.94490 0.98758 1.21430 0.94380 0.96439 0.99195 0.89644 1.21092 0.98947 0.80616 0.97270 1.45348 1.56300 1.10662 1.29416 1.15949 0.80209 0.81016 0.82658 1.90913 1.44962 1.77889 1.32488 1.47780 1.51490 1.06458 1.30252 1.21481 0.93508 0.96662 0.89161 1.21947 1.00109 0.96885 0.98221 1.21614 1.00011 0.96289 0.96818 1.19060 0.93098 0.93018 0.92750 0.95337 1.21078 1.26674 0.96232 1.12002 0.92421 1.25057 0.95804 0.95457 0.97729 1.69901 1.30558 1.19482 1.31686 0.86605 0.77777 0.82247 0.81428 1.20669 1.21243 1.19978 1.22248 0.98068 0.88162 0.90606 1.22148 0.94963 0.98297 0.91306 0.91211 0.91430 0.95735 0.90900 0.94973 0.90964 0.91372 0.91102 0.91829 0.92043 0.91613 0.77371 0.92209 0.92245 0.92173 0.92388 0.93099 0.93238 0.92691 0.94371 0.86062 0.94562 0.90664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.59 60.07 0.58 0.76 16 2 N -0.54 -4.87 4.91 -242.97 -1.19 -6.06 16 3 C 0.05 0.42 5.46 -3.85 -0.02 0.40 16 4 C -0.12 -0.87 6.09 -26.65 -0.16 -1.03 16 5 C -0.11 -0.98 5.29 -26.61 -0.14 -1.13 16 6 C -0.10 -0.95 2.39 -90.54 -0.22 -1.16 16 7 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 8 C 0.15 1.94 5.08 -4.04 -0.02 1.92 16 9 N -0.76 -11.56 5.21 -65.22 -0.34 -11.90 16 10 C 0.70 14.64 8.30 -86.92 -0.72 13.92 16 11 O -0.59 -15.03 15.78 5.29 0.08 -14.94 16 12 N -0.62 -12.82 2.97 -178.24 -0.53 -13.35 16 13 C 0.12 1.82 6.43 -3.71 -0.02 1.80 16 14 C -0.13 -2.16 6.08 -26.61 -0.16 -2.32 16 15 C -0.11 -2.20 5.10 -26.69 -0.14 -2.33 16 16 C 0.04 1.00 2.26 -91.43 -0.21 0.80 16 17 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 18 C -0.52 -14.28 8.56 -34.44 -0.29 -14.57 16 19 H 0.06 1.54 7.74 -52.48 -0.41 1.14 16 20 C 0.06 1.75 5.31 -17.82 -0.09 1.66 16 21 N -0.88 -26.04 11.41 55.43 0.63 -25.40 16 22 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 26 C 0.13 3.22 5.42 -3.49 -0.02 3.20 16 27 C 0.06 0.59 4.61 -3.83 -0.02 0.57 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.44 8.09 -51.93 -0.42 0.01 16 30 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.88 8.14 -51.92 -0.42 0.45 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.39 4.93 5.12 -40.82 -0.21 4.72 16 40 H 0.06 0.75 5.57 -51.93 -0.29 0.46 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 46 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 47 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 48 H 0.12 3.54 5.18 -51.93 -0.27 3.27 16 49 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.07 0.74 7.19 -51.93 -0.37 0.36 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -32.29 378.92 -11.45 -43.74 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -9.13 Total: 3.24 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -1.66 Total: 2.49 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -1.43 Total: -56.71 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: 0.08 Total: -14.94 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.29 -11.45 -43.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595546330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.172 kcal (2) G-P(sol) polarization free energy of solvation -32.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds