Wall clock time and date at job start Tue Mar 31 2020 09:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46821 * 110.98733 * 2 1 4 4 C 1.53040 * 109.51938 * 174.15580 * 3 2 1 5 5 C 1.53115 * 109.27403 * 59.18183 * 4 3 2 6 6 C 1.53116 * 109.16408 * 302.34594 * 5 4 3 7 7 H 1.09000 * 109.50564 * 297.71623 * 6 5 4 8 8 C 1.53000 * 109.53869 * 177.61857 * 6 5 4 9 9 N 1.46504 * 109.47285 * 175.17906 * 8 6 5 10 10 C 1.34779 * 120.00053 * 180.02562 * 9 8 6 11 11 O 1.21581 * 119.99800 * 354.92077 * 10 9 8 12 12 N 1.34772 * 119.99995 * 174.92599 * 10 9 8 13 13 C 1.46925 * 120.63025 * 5.02661 * 12 10 9 14 14 C 1.53191 * 108.77873 * 233.58557 * 13 12 10 15 15 C 1.53042 * 109.31419 * 305.37027 * 14 13 12 16 16 C 1.53045 * 109.53699 * 61.36000 * 15 14 13 17 17 H 1.09003 * 109.49418 * 58.58864 * 16 15 14 18 18 C 1.50697 * 109.49509 * 178.65130 * 16 15 14 19 19 H 1.08004 * 119.99954 * 0.02562 * 18 16 15 20 20 C 1.37872 * 120.00050 * 180.02562 * 18 16 15 21 21 N 1.31516 * 120.00075 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00140 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47218 * 89.99737 * 22 20 18 24 24 H 1.48501 * 109.46984 * 209.99871 * 22 20 18 25 25 H 1.48501 * 109.47248 * 329.99457 * 22 20 18 26 26 C 1.46925 * 120.63135 * 184.75165 * 12 10 9 27 27 C 1.46846 * 110.99592 * 235.78841 * 2 1 3 28 28 H 1.08994 * 109.47341 * 184.20923 * 1 2 3 29 29 H 1.09003 * 109.46926 * 304.21404 * 1 2 3 30 30 H 1.09002 * 109.46950 * 64.20987 * 1 2 3 31 31 H 1.09005 * 109.46599 * 54.14270 * 3 2 1 32 32 H 1.09003 * 109.45752 * 294.17066 * 3 2 1 33 33 H 1.08995 * 109.50297 * 299.24309 * 4 3 2 34 34 H 1.08998 * 109.53465 * 179.14217 * 4 3 2 35 35 H 1.09006 * 109.52481 * 182.43882 * 5 4 3 36 36 H 1.09000 * 109.57662 * 62.28144 * 5 4 3 37 37 H 1.09009 * 109.47035 * 295.17484 * 8 6 5 38 38 H 1.08999 * 109.47153 * 55.17351 * 8 6 5 39 39 H 0.96998 * 119.99871 * 359.97438 * 9 8 6 40 40 H 1.08999 * 109.58824 * 353.38315 * 13 12 10 41 41 H 1.09001 * 109.58182 * 113.80006 * 13 12 10 42 42 H 1.08999 * 109.49362 * 65.31928 * 14 13 12 43 43 H 1.09000 * 109.49838 * 185.41542 * 14 13 12 44 44 H 1.08994 * 109.45714 * 181.38148 * 15 14 13 45 45 H 1.09005 * 109.45545 * 301.35723 * 15 14 13 46 46 H 0.97000 * 120.00322 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.58786 * 246.20389 * 26 12 10 48 48 H 1.09004 * 109.58199 * 6.62570 * 26 12 10 49 49 H 1.09001 * 109.46501 * 65.82449 * 27 2 1 50 50 H 1.08997 * 109.46740 * 305.84782 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3708 0.0000 4 6 3.5178 1.3343 0.1469 5 6 4.1186 0.5372 -1.0142 6 6 3.5181 -0.8713 -1.0208 7 1 3.7813 -1.3835 -0.0953 8 6 4.0681 -1.6565 -2.2133 9 7 3.5834 -3.0377 -2.1540 10 6 3.9424 -3.9194 -3.1081 11 8 4.5917 -3.5474 -4.0663 12 7 3.5817 -5.2135 -2.9999 13 6 2.7057 -5.6575 -1.9071 14 6 3.3835 -6.8183 -1.1724 15 6 3.7391 -7.9155 -2.1783 16 6 4.7195 -7.3614 -3.2147 17 1 5.6154 -6.9990 -2.7106 18 6 5.0946 -8.4515 -4.1853 19 1 4.6755 -9.4407 -4.0747 20 6 5.9727 -8.1859 -5.2145 21 7 6.4827 -6.9812 -5.3495 22 14 6.4372 -9.5369 -6.4180 23 1 5.4868 -9.5316 -7.5591 24 1 7.8147 -9.3006 -6.9199 25 1 6.3794 -10.8526 -5.7318 26 6 4.0521 -6.2059 -3.9758 27 6 1.9952 -0.7708 -1.1337 28 1 -0.3634 -1.0248 0.0754 29 1 -0.3633 0.5779 0.8498 30 1 -0.3633 0.4471 -0.9253 31 1 1.5629 1.9256 0.8330 32 1 1.7320 1.8605 -0.9377 33 1 3.7810 0.8569 1.0907 34 1 3.9099 2.3512 0.1316 35 1 5.1996 0.4718 -0.8904 36 1 3.8894 1.0352 -1.9563 37 1 3.7310 -1.1926 -3.1404 38 1 5.1576 -1.6519 -2.1800 39 1 3.0047 -3.3179 -1.4277 40 1 2.5398 -4.8331 -1.2137 41 1 1.7519 -5.9911 -2.3161 42 1 4.2920 -6.4610 -0.6876 43 1 2.7035 -7.2200 -0.4211 44 1 4.1993 -8.7531 -1.6544 45 1 2.8332 -8.2548 -2.6808 46 1 7.1008 -6.7945 -6.0733 47 1 3.2060 -6.5832 -4.5500 48 1 4.7751 -5.7432 -4.6477 49 1 1.7324 -0.2709 -2.0660 50 1 1.5635 -1.7716 -1.1242 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595546330.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:52:25 Heat of formation + Delta-G solvation = -58.082697 kcal Electronic energy + Delta-G solvation = -26751.093668 eV Core-core repulsion = 23197.551228 eV Total energy + Delta-G solvation = -3553.542440 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35826 -40.08417 -38.46199 -36.32759 -35.29439 -34.24338 -33.37977 -31.97965 -31.34004 -27.84782 -27.37822 -26.82611 -25.51171 -23.76885 -23.45062 -22.57315 -21.67052 -20.82506 -20.17174 -19.08384 -18.20462 -17.23145 -16.80447 -16.62847 -16.54481 -16.01824 -15.54053 -15.49897 -15.27419 -15.17860 -15.10362 -14.52369 -14.29902 -14.25477 -14.06686 -13.75849 -13.59965 -13.45268 -13.19642 -13.06315 -12.87852 -12.65971 -12.38095 -12.28257 -12.21895 -12.03991 -11.84680 -11.63396 -11.61284 -11.45223 -11.28211 -11.19686 -10.93948 -10.80969 -10.51011 -10.14368 -9.29890 -9.23744 -8.08967 -6.26139 1.41376 1.41732 1.52765 1.80157 2.27437 2.42935 2.94244 3.05501 3.21073 3.73505 3.80307 3.87515 4.06239 4.14639 4.17341 4.25792 4.31955 4.41460 4.54293 4.55636 4.57628 4.61471 4.67541 4.73041 4.79028 4.79889 4.81558 4.82743 4.87608 4.97861 5.04677 5.06857 5.12072 5.17238 5.27663 5.28211 5.30245 5.34813 5.45714 5.56798 5.58993 5.66466 5.90333 5.98932 6.09242 6.14587 6.18653 6.37456 6.87082 7.15086 7.43760 7.69959 8.94398 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.025448 B = 0.002922 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.023275 B = 9581.048800 C =10252.362372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.550 5.550 3 C 0.051 3.949 4 C -0.110 4.110 5 C -0.115 4.115 6 C -0.081 4.081 7 H 0.090 0.910 8 C 0.147 3.853 9 N -0.732 5.732 10 C 0.692 3.308 11 O -0.642 6.642 12 N -0.628 5.628 13 C 0.110 3.890 14 C -0.125 4.125 15 C -0.105 4.105 16 C 0.039 3.961 17 H -0.014 1.014 18 C -0.535 4.535 19 H 0.063 0.937 20 C 0.008 3.992 21 N -0.915 5.915 22 Si 0.958 3.042 23 H -0.275 1.275 24 H -0.288 1.288 25 H -0.262 1.262 26 C 0.144 3.856 27 C 0.064 3.936 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.022 0.978 31 H 0.086 0.914 32 H 0.029 0.971 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.050 0.950 38 H 0.050 0.950 39 H 0.407 0.593 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.105 0.895 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.259 0.741 47 H 0.033 0.967 48 H 0.073 0.927 49 H 0.026 0.974 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.970 15.338 15.197 25.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.275 5.275 3 C -0.076 4.076 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.100 4.100 7 H 0.108 0.892 8 C 0.022 3.978 9 N -0.392 5.392 10 C 0.394 3.606 11 O -0.524 6.524 12 N -0.363 5.363 13 C -0.012 4.012 14 C -0.163 4.163 15 C -0.142 4.142 16 C 0.020 3.980 17 H 0.004 0.996 18 C -0.574 4.574 19 H 0.081 0.919 20 C -0.191 4.191 21 N -0.554 5.554 22 Si 0.783 3.217 23 H -0.201 1.201 24 H -0.214 1.214 25 H -0.186 1.186 26 C 0.021 3.979 27 C -0.065 4.065 28 H 0.091 0.909 29 H 0.098 0.902 30 H 0.041 0.959 31 H 0.105 0.895 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.246 0.754 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.068 0.932 43 H 0.123 0.877 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.051 0.949 48 H 0.091 0.909 49 H 0.045 0.955 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.240 15.484 14.853 24.702 hybrid contribution 0.245 -0.441 -1.704 1.777 sum -11.995 15.044 13.149 23.304 Atomic orbital electron populations 1.22409 0.86342 1.02895 1.00806 1.61940 1.08448 1.14261 1.42806 1.22189 0.96005 0.88721 1.00728 1.21548 0.94023 1.00764 0.98481 1.21573 1.00622 0.93723 0.99405 1.21307 0.94774 0.96643 0.97288 0.89191 1.21196 0.98231 0.79721 0.98621 1.45112 1.55470 1.10491 1.28166 1.16221 0.79847 0.81629 0.82918 1.90871 1.47498 1.78966 1.35078 1.47679 1.52044 1.05768 1.30848 1.21856 0.93024 0.98021 0.88274 1.21905 1.00860 0.95617 0.97940 1.21506 0.98749 0.97565 0.96416 1.18986 0.92866 0.92681 0.93490 0.99620 1.21531 1.26415 0.97067 1.12380 0.91915 1.25917 0.95953 0.97523 0.99724 1.70108 1.31303 1.21661 1.32314 0.85559 0.77219 0.79757 0.79147 1.20080 1.21393 1.18611 1.21649 0.96640 0.88669 0.90942 1.22073 0.94442 0.98535 0.91409 0.90888 0.90175 0.95946 0.89549 0.95294 0.90998 0.89827 0.90943 0.92105 0.93204 0.93117 0.75393 0.88343 0.90277 0.93161 0.87709 0.92977 0.92413 0.93221 0.94897 0.90896 0.95531 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.59 127.69 1.22 1.52 16 2 N -0.55 -8.53 4.91 -922.63 -4.53 -13.06 16 3 C 0.05 0.68 5.46 86.33 0.47 1.15 16 4 C -0.11 -1.41 6.09 30.65 0.19 -1.22 16 5 C -0.12 -1.84 5.29 30.67 0.16 -1.67 16 6 C -0.08 -1.50 2.39 -10.74 -0.03 -1.52 16 7 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 8 C 0.15 3.92 5.08 86.38 0.44 4.36 16 9 N -0.73 -21.86 5.21 -478.52 -2.49 -24.35 16 10 C 0.69 29.55 8.30 179.06 1.49 31.03 16 11 O -0.64 -34.80 15.78 -3.97 -0.06 -34.86 16 12 N -0.63 -25.88 2.97 -836.09 -2.48 -28.36 16 13 C 0.11 3.14 6.43 86.36 0.56 3.70 16 14 C -0.13 -3.67 6.08 30.67 0.19 -3.48 16 15 C -0.10 -4.05 5.10 30.62 0.16 -3.90 16 16 C 0.04 2.01 2.26 -11.32 -0.03 1.98 16 17 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 18 C -0.54 -29.93 8.56 25.60 0.22 -29.71 16 19 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 20 C 0.01 0.47 5.31 84.65 0.45 0.92 16 21 N -0.92 -56.92 11.41 21.45 0.24 -56.67 16 22 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 24 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 25 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 26 C 0.14 7.41 5.42 86.51 0.47 7.88 16 27 C 0.06 1.12 4.61 86.33 0.40 1.52 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.08 0.81 8.09 -2.39 -0.02 0.79 16 30 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.09 0.94 8.08 -2.38 -0.02 0.92 16 32 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.41 9.26 5.12 -92.71 -0.47 8.79 16 40 H 0.10 2.04 5.57 -2.39 -0.01 2.03 16 41 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 47 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.07 4.52 5.18 -2.38 -0.01 4.51 16 49 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.08 1.31 7.19 -2.39 -0.02 1.29 16 Total: -1.00 -75.37 378.92 -0.52 -75.89 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.42 Total: 21.84 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 6.35 Total: 12.55 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -9.26 Total: -122.44 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.06 Total: -34.86 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -75.37 -0.52 -75.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595546330.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.810 kcal (2) G-P(sol) polarization free energy of solvation -75.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds