Wall clock time and date at job start Tue Mar 31 2020 09:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47292 * 2 1 4 4 C 1.48808 * 111.18157 * 49.69808 * 3 2 1 5 5 C 1.54943 * 103.34239 * 159.50617 * 4 3 2 6 6 C 1.54592 * 102.92516 * 322.69363 * 5 4 3 7 7 C 1.47895 * 111.00016 * 167.04060 * 3 2 1 8 8 H 1.09002 * 109.91921 * 333.70347 * 7 3 2 9 9 C 1.52997 * 109.92191 * 94.80485 * 7 3 2 10 10 N 1.46502 * 109.46703 * 297.12550 * 9 7 3 11 11 C 1.34780 * 119.99720 * 174.00538 * 10 9 7 12 12 O 1.21577 * 120.00294 * 4.14872 * 11 10 9 13 13 N 1.34781 * 119.99724 * 184.15851 * 11 10 9 14 14 C 1.46924 * 120.63043 * 355.41134 * 13 11 10 15 15 C 1.53197 * 108.77530 * 126.41753 * 14 13 11 16 16 C 1.53043 * 109.33628 * 54.61894 * 15 14 13 17 17 C 1.53035 * 109.54052 * 298.68441 * 16 15 14 18 18 H 1.09005 * 109.49939 * 301.35226 * 17 16 15 19 19 C 1.50695 * 109.49908 * 181.28911 * 17 16 15 20 20 H 1.08004 * 119.99953 * 359.78053 * 19 17 16 21 21 C 1.37881 * 120.00102 * 180.02562 * 19 17 16 22 22 N 1.31511 * 120.00022 * 359.72263 * 21 19 17 23 23 Si 1.86798 * 119.99864 * 179.71996 * 21 19 17 24 24 H 1.48496 * 109.47163 * 60.00200 * 23 21 19 25 25 H 1.48500 * 109.46869 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47431 * 299.99896 * 23 21 19 27 27 C 1.46926 * 120.62917 * 175.44232 * 13 11 10 28 28 H 1.09003 * 109.46824 * 299.99516 * 1 2 3 29 29 H 1.08996 * 109.47100 * 60.00115 * 1 2 3 30 30 H 1.09007 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46962 * 239.99711 * 2 1 3 32 32 H 1.09004 * 109.47405 * 120.00003 * 2 1 3 33 33 H 1.08999 * 110.52118 * 41.08272 * 4 3 2 34 34 H 1.08993 * 110.70044 * 278.02280 * 4 3 2 35 35 H 1.09009 * 110.72048 * 204.33104 * 5 4 3 36 36 H 1.09003 * 110.72244 * 81.05712 * 5 4 3 37 37 H 1.09005 * 110.30853 * 263.04151 * 6 5 4 38 38 H 1.08997 * 110.31053 * 140.87904 * 6 5 4 39 39 H 1.08999 * 109.47361 * 177.12751 * 9 7 3 40 40 H 1.08994 * 109.47167 * 57.12096 * 9 7 3 41 41 H 0.97003 * 120.00471 * 354.00606 * 10 9 7 42 42 H 1.09001 * 109.59034 * 246.20704 * 14 13 11 43 43 H 1.08998 * 109.59171 * 6.49039 * 14 13 11 44 44 H 1.09002 * 109.49565 * 174.58851 * 15 14 13 45 45 H 1.09000 * 109.49651 * 294.65467 * 15 14 13 46 46 H 1.09003 * 109.48009 * 178.64691 * 16 15 14 47 47 H 1.08998 * 109.43047 * 58.69023 * 16 15 14 48 48 H 0.96996 * 120.00395 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.58841 * 113.79747 * 27 13 11 50 50 H 1.09000 * 109.58973 * 353.36464 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3528 2.1911 1.0582 5 6 2.3222 3.3820 1.2647 6 6 3.7136 2.7254 1.1142 7 6 3.4650 1.4361 0.3096 8 1 3.7485 0.5673 0.9037 9 6 4.2753 1.4671 -0.9877 10 7 4.0440 0.2298 -1.7375 11 6 4.5606 0.0846 -2.9738 12 8 5.2807 0.9477 -3.4371 13 7 4.2788 -1.0176 -3.6967 14 6 3.4933 -2.1141 -3.1143 15 6 2.3104 -2.4185 -4.0389 16 6 2.8299 -2.6985 -5.4510 17 6 3.5549 -1.4608 -5.9844 18 1 2.8704 -0.6125 -5.9903 19 6 4.0385 -1.7265 -7.3867 20 1 3.8512 -2.6838 -7.8502 21 6 4.7246 -0.7492 -8.0761 22 7 4.9522 0.4168 -7.5120 23 14 5.3309 -1.0814 -9.8115 24 1 4.1742 -1.3941 -10.6886 25 1 6.0331 0.1205 -10.3289 26 1 6.2669 -2.2341 -9.7967 27 6 4.7519 -1.1455 -5.0818 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.2552 1.6111 1.9759 34 1 0.3786 2.5425 0.7184 35 1 2.2025 3.8085 2.2608 36 1 2.1690 4.1415 0.4980 37 1 4.1270 2.4861 2.0940 38 1 4.3873 3.3871 0.5699 39 1 5.3357 1.5561 -0.7518 40 1 3.9642 2.3204 -1.5902 41 1 3.5191 -0.4848 -1.3441 42 1 4.1194 -3.0011 -3.0179 43 1 3.1251 -1.8183 -2.1319 44 1 1.7745 -3.2924 -3.6685 45 1 1.6370 -1.5617 -4.0623 46 1 1.9922 -2.9389 -6.1056 47 1 3.5216 -3.5404 -5.4226 48 1 5.4345 1.1044 -7.9970 49 1 5.4806 -1.9536 -5.1459 50 1 5.2120 -0.2096 -5.3987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596391143.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:33 Heat of formation + Delta-G solvation = -24.558636 kcal Electronic energy + Delta-G solvation = -27332.617178 eV Core-core repulsion = 23780.528450 eV Total energy + Delta-G solvation = -3552.088728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.02634 -39.10300 -36.74591 -34.26816 -33.78500 -33.15311 -31.67889 -30.07816 -29.46090 -28.79928 -25.65015 -24.96558 -24.03654 -22.68785 -21.76497 -20.81483 -20.63501 -19.87168 -18.59434 -17.53417 -16.54194 -16.17898 -15.84825 -15.25424 -15.14723 -14.67357 -14.50889 -14.24709 -13.76688 -13.64876 -13.49899 -13.28362 -13.00787 -12.65728 -12.58167 -12.46248 -12.33710 -11.93747 -11.86097 -11.67772 -11.52146 -11.36107 -11.23750 -11.02889 -10.92912 -10.84593 -10.74141 -10.47274 -10.33998 -10.16382 -9.81137 -9.33756 -9.03251 -8.89319 -8.61423 -8.54329 -8.35135 -7.54040 -5.91865 -4.01039 3.32005 3.38456 3.42623 3.43954 3.68771 4.00170 4.34156 4.42376 4.47775 4.54433 4.70504 4.89572 4.94510 5.00125 5.13276 5.23711 5.30584 5.33553 5.37808 5.46594 5.53351 5.55569 5.59597 5.62537 5.66358 5.75860 5.80738 5.92179 5.94760 5.98461 6.01478 6.15056 6.21551 6.36940 6.64583 6.68181 6.73615 6.87321 6.87674 6.98432 7.05595 7.14470 7.43213 7.59827 7.82355 8.00950 8.14185 8.47907 8.70399 9.02391 9.38520 9.64138 11.13202 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.003499 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.047862 B = 7999.608064 C = 8719.062777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.039 3.961 3 N -0.508 5.508 4 C 0.035 3.965 5 C -0.124 4.124 6 C -0.123 4.123 7 C 0.054 3.946 8 H 0.056 0.944 9 C 0.156 3.844 10 N -0.754 5.754 11 C 0.701 3.299 12 O -0.585 6.585 13 N -0.624 5.624 14 C 0.117 3.883 15 C -0.133 4.133 16 C -0.109 4.109 17 C 0.040 3.960 18 H 0.029 0.971 19 C -0.523 4.523 20 H 0.057 0.943 21 C 0.063 3.937 22 N -0.878 5.878 23 Si 0.892 3.108 24 H -0.278 1.278 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.130 3.870 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.387 0.613 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.050 0.950 47 H 0.048 0.952 48 H 0.264 0.736 49 H 0.037 0.963 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.261 0.003 21.002 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.089 4.089 3 N -0.233 5.233 4 C -0.092 4.092 5 C -0.162 4.162 6 C -0.162 4.162 7 C -0.055 4.055 8 H 0.074 0.926 9 C 0.031 3.969 10 N -0.415 5.415 11 C 0.402 3.598 12 O -0.463 6.463 13 N -0.360 5.360 14 C -0.007 4.007 15 C -0.171 4.171 16 C -0.147 4.147 17 C 0.021 3.979 18 H 0.047 0.953 19 C -0.561 4.561 20 H 0.075 0.925 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.720 3.280 24 H -0.203 1.203 25 H -0.213 1.213 26 H -0.203 1.203 27 C 0.010 3.990 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.224 0.776 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.079 0.921 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.056 0.944 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.733 1.029 20.069 21.194 hybrid contribution 0.170 -1.013 0.072 1.029 sum -6.563 0.016 20.141 21.184 Atomic orbital electron populations 1.21856 0.94552 1.02046 1.02552 1.22398 0.96406 0.89499 1.00588 1.64835 1.02686 1.11087 1.44678 1.23272 0.98611 0.94301 0.93039 1.22490 0.94094 0.97748 1.01870 1.22363 0.98167 0.95935 0.99718 1.22700 0.89029 0.98173 0.95606 0.92649 1.21138 0.97635 0.87566 0.90550 1.45420 1.59226 1.19642 1.17175 1.15944 0.80666 0.82800 0.80340 1.90905 1.41597 1.42757 1.71006 1.47756 1.55990 1.16559 1.15742 1.21467 0.93375 0.90616 0.95264 1.21945 0.96952 1.00619 0.97615 1.21603 0.99481 1.00305 0.93266 1.18977 0.92994 0.92536 0.93425 0.95335 1.21037 1.36849 0.99892 0.98340 0.92495 1.25053 0.95902 0.95073 0.97959 1.69889 1.40223 1.04277 1.37159 0.86668 0.78931 0.77587 0.84856 1.20347 1.21282 1.20293 1.22150 0.97792 1.04175 0.74911 0.92678 0.91484 0.92066 0.90472 0.94806 0.93918 0.89905 0.91084 0.90434 0.91206 0.90167 0.92092 0.90852 0.77582 0.92301 0.92629 0.92472 0.92113 0.93105 0.93274 0.92623 0.94443 0.86015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.50 37.16 0.35 -0.95 16 2 C 0.04 0.38 5.31 -3.82 -0.02 0.36 16 3 N -0.51 -5.46 5.00 -222.34 -1.11 -6.58 16 4 C 0.04 0.30 5.05 -1.74 -0.01 0.29 16 5 C -0.12 -0.98 7.06 -24.87 -0.18 -1.15 16 6 C -0.12 -1.05 6.57 -25.38 -0.17 -1.22 16 7 C 0.05 0.57 2.69 -66.65 -0.18 0.39 16 8 H 0.06 0.55 7.51 -51.93 -0.39 0.16 16 9 C 0.16 2.23 5.11 -4.04 -0.02 2.21 16 10 N -0.75 -12.23 5.23 -65.23 -0.34 -12.57 16 11 C 0.70 15.15 8.30 -86.91 -0.72 14.43 16 12 O -0.59 -15.37 15.78 5.30 0.08 -15.29 16 13 N -0.62 -13.16 2.97 -178.49 -0.53 -13.69 16 14 C 0.12 1.89 6.43 -3.71 -0.02 1.87 16 15 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 16 C -0.11 -2.21 5.11 -26.69 -0.14 -2.34 16 17 C 0.04 1.01 2.25 -91.65 -0.21 0.81 16 18 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 19 C -0.52 -14.44 8.56 -34.44 -0.29 -14.74 16 20 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 21 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 22 N -0.88 -26.26 11.41 55.43 0.63 -25.62 16 23 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.13 3.29 5.39 -3.71 -0.02 3.27 16 28 H 0.05 0.41 6.72 -51.93 -0.35 0.07 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.85 5.38 -51.93 -0.28 0.57 16 32 H 0.03 0.29 7.72 -51.93 -0.40 -0.11 16 33 H 0.04 0.33 7.90 -51.93 -0.41 -0.08 16 34 H 0.08 0.69 7.71 -51.93 -0.40 0.29 16 35 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.70 7.69 -51.93 -0.40 0.30 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 41 H 0.39 5.30 3.30 -40.82 -0.13 5.16 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.73 5.08 -51.93 -0.26 0.47 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 48 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 49 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.12 3.60 5.16 -51.93 -0.27 3.33 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -32.80 374.17 -11.28 -44.08 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -8.76 Total: 4.85 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -1.88 Total: 2.56 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -1.35 Total: -58.46 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.08 Total: -15.29 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.80 -11.28 -44.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596391143.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.520 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds