Wall clock time and date at job start Tue Mar 31 2020 09:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46902 * 109.47292 * 2 1 4 4 C 1.48808 * 111.18157 * 49.69808 * 3 2 1 5 5 C 1.54943 * 103.34239 * 159.50617 * 4 3 2 6 6 C 1.54592 * 102.92516 * 322.69363 * 5 4 3 7 7 C 1.47895 * 111.00016 * 167.04060 * 3 2 1 8 8 H 1.09002 * 109.91921 * 333.70347 * 7 3 2 9 9 C 1.52997 * 109.92191 * 94.80485 * 7 3 2 10 10 N 1.46502 * 109.46703 * 297.12550 * 9 7 3 11 11 C 1.34780 * 119.99720 * 174.00538 * 10 9 7 12 12 O 1.21577 * 120.00294 * 4.14872 * 11 10 9 13 13 N 1.34781 * 119.99724 * 184.15851 * 11 10 9 14 14 C 1.46924 * 120.63043 * 355.41134 * 13 11 10 15 15 C 1.53197 * 108.77530 * 126.41753 * 14 13 11 16 16 C 1.53043 * 109.33628 * 54.61894 * 15 14 13 17 17 C 1.53035 * 109.54052 * 298.68441 * 16 15 14 18 18 H 1.09005 * 109.49939 * 301.35226 * 17 16 15 19 19 C 1.50695 * 109.49908 * 181.28911 * 17 16 15 20 20 H 1.08004 * 119.99953 * 359.78053 * 19 17 16 21 21 C 1.37881 * 120.00102 * 180.02562 * 19 17 16 22 22 N 1.31511 * 120.00022 * 359.72263 * 21 19 17 23 23 Si 1.86798 * 119.99864 * 179.71996 * 21 19 17 24 24 H 1.48496 * 109.47163 * 60.00200 * 23 21 19 25 25 H 1.48500 * 109.46869 * 179.97438 * 23 21 19 26 26 H 1.48496 * 109.47431 * 299.99896 * 23 21 19 27 27 C 1.46926 * 120.62917 * 175.44232 * 13 11 10 28 28 H 1.09003 * 109.46824 * 299.99516 * 1 2 3 29 29 H 1.08996 * 109.47100 * 60.00115 * 1 2 3 30 30 H 1.09007 * 109.47076 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46962 * 239.99711 * 2 1 3 32 32 H 1.09004 * 109.47405 * 120.00003 * 2 1 3 33 33 H 1.08999 * 110.52118 * 41.08272 * 4 3 2 34 34 H 1.08993 * 110.70044 * 278.02280 * 4 3 2 35 35 H 1.09009 * 110.72048 * 204.33104 * 5 4 3 36 36 H 1.09003 * 110.72244 * 81.05712 * 5 4 3 37 37 H 1.09005 * 110.30853 * 263.04151 * 6 5 4 38 38 H 1.08997 * 110.31053 * 140.87904 * 6 5 4 39 39 H 1.08999 * 109.47361 * 177.12751 * 9 7 3 40 40 H 1.08994 * 109.47167 * 57.12096 * 9 7 3 41 41 H 0.97003 * 120.00471 * 354.00606 * 10 9 7 42 42 H 1.09001 * 109.59034 * 246.20704 * 14 13 11 43 43 H 1.08998 * 109.59171 * 6.49039 * 14 13 11 44 44 H 1.09002 * 109.49565 * 174.58851 * 15 14 13 45 45 H 1.09000 * 109.49651 * 294.65467 * 15 14 13 46 46 H 1.09003 * 109.48009 * 178.64691 * 16 15 14 47 47 H 1.08998 * 109.43047 * 58.69023 * 16 15 14 48 48 H 0.96996 * 120.00395 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.58841 * 113.79747 * 27 13 11 50 50 H 1.09000 * 109.58973 * 353.36464 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3528 2.1911 1.0582 5 6 2.3222 3.3820 1.2647 6 6 3.7136 2.7254 1.1142 7 6 3.4650 1.4361 0.3096 8 1 3.7485 0.5673 0.9037 9 6 4.2753 1.4671 -0.9877 10 7 4.0440 0.2298 -1.7375 11 6 4.5606 0.0846 -2.9738 12 8 5.2807 0.9477 -3.4371 13 7 4.2788 -1.0176 -3.6967 14 6 3.4933 -2.1141 -3.1143 15 6 2.3104 -2.4185 -4.0389 16 6 2.8299 -2.6985 -5.4510 17 6 3.5549 -1.4608 -5.9844 18 1 2.8704 -0.6125 -5.9903 19 6 4.0385 -1.7265 -7.3867 20 1 3.8512 -2.6838 -7.8502 21 6 4.7246 -0.7492 -8.0761 22 7 4.9522 0.4168 -7.5120 23 14 5.3309 -1.0814 -9.8115 24 1 4.1742 -1.3941 -10.6886 25 1 6.0331 0.1205 -10.3289 26 1 6.2669 -2.2341 -9.7967 27 6 4.7519 -1.1455 -5.0818 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.2552 1.6111 1.9759 34 1 0.3786 2.5425 0.7184 35 1 2.2025 3.8085 2.2608 36 1 2.1690 4.1415 0.4980 37 1 4.1270 2.4861 2.0940 38 1 4.3873 3.3871 0.5699 39 1 5.3357 1.5561 -0.7518 40 1 3.9642 2.3204 -1.5902 41 1 3.5191 -0.4848 -1.3441 42 1 4.1194 -3.0011 -3.0179 43 1 3.1251 -1.8183 -2.1319 44 1 1.7745 -3.2924 -3.6685 45 1 1.6370 -1.5617 -4.0623 46 1 1.9922 -2.9389 -6.1056 47 1 3.5216 -3.5404 -5.4226 48 1 5.4345 1.1044 -7.9970 49 1 5.4806 -1.9536 -5.1459 50 1 5.2120 -0.2096 -5.3987 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596391143.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:35:32 Heat of formation + Delta-G solvation = -46.857623 kcal Electronic energy + Delta-G solvation = -27333.584135 eV Core-core repulsion = 23780.528450 eV Total energy + Delta-G solvation = -3553.055685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.41093 -40.19587 -38.44002 -35.79265 -35.13223 -34.43215 -33.40162 -31.61029 -30.76120 -29.51835 -27.18009 -26.63310 -25.42002 -23.60981 -23.44121 -21.76341 -21.48475 -21.41974 -20.14393 -19.08947 -18.24751 -17.48686 -17.04584 -16.66736 -16.40488 -16.30529 -15.63075 -15.26683 -15.20514 -15.14087 -15.06667 -14.41972 -14.28365 -14.18495 -13.89143 -13.63551 -13.50525 -13.38702 -13.04084 -12.84119 -12.69416 -12.45269 -12.30076 -12.27710 -12.23927 -12.13681 -11.95194 -11.86534 -11.72706 -11.62089 -11.44720 -11.21026 -10.94612 -10.82648 -10.50022 -10.11498 -9.33807 -9.23347 -8.08393 -6.26282 1.41504 1.43558 1.51965 1.80547 2.29359 2.43344 2.93431 3.03906 3.21003 3.65395 3.70282 3.94241 4.02310 4.13758 4.16012 4.23957 4.28313 4.31863 4.34926 4.55404 4.59029 4.61373 4.64983 4.70697 4.76298 4.80972 4.82547 4.87160 4.96327 4.98586 5.06747 5.09044 5.10924 5.22402 5.27182 5.28312 5.29564 5.34282 5.36240 5.56480 5.59376 5.65660 5.89814 5.97372 5.98909 6.14486 6.17794 6.37161 6.87009 7.14333 7.43767 7.70470 8.94818 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.020343 B = 0.003499 C = 0.003211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.047862 B = 7999.608064 C = 8719.062777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.037 3.963 3 N -0.535 5.535 4 C 0.038 3.962 5 C -0.122 4.122 6 C -0.122 4.122 7 C 0.063 3.937 8 H 0.073 0.927 9 C 0.155 3.845 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.643 6.643 13 N -0.628 5.628 14 C 0.111 3.889 15 C -0.124 4.124 16 C -0.104 4.104 17 C 0.039 3.961 18 H -0.017 1.017 19 C -0.538 4.538 20 H 0.064 0.936 21 C 0.008 3.992 22 N -0.916 5.916 23 Si 0.959 3.041 24 H -0.267 1.267 25 H -0.290 1.290 26 H -0.266 1.266 27 C 0.145 3.855 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.042 0.958 41 H 0.402 0.598 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.052 0.948 47 H 0.058 0.942 48 H 0.259 0.741 49 H 0.033 0.967 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 -2.187 23.449 25.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.091 4.091 3 N -0.261 5.261 4 C -0.089 4.089 5 C -0.160 4.160 6 C -0.160 4.160 7 C -0.046 4.046 8 H 0.091 0.909 9 C 0.030 3.970 10 N -0.391 5.391 11 C 0.393 3.607 12 O -0.524 6.524 13 N -0.364 5.364 14 C -0.011 4.011 15 C -0.162 4.162 16 C -0.141 4.141 17 C 0.020 3.980 18 H 0.001 0.999 19 C -0.576 4.576 20 H 0.082 0.918 21 C -0.191 4.191 22 N -0.554 5.554 23 Si 0.784 3.216 24 H -0.192 1.192 25 H -0.216 1.216 26 H -0.191 1.191 27 C 0.022 3.978 28 H 0.085 0.915 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.243 0.757 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.124 0.876 45 H 0.066 0.934 46 H 0.071 0.929 47 H 0.077 0.923 48 H 0.068 0.932 49 H 0.051 0.949 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.083 -1.211 22.574 24.008 hybrid contribution 0.533 -0.311 -0.666 0.908 sum -7.550 -1.522 21.908 23.222 Atomic orbital electron populations 1.21822 0.93764 1.02794 1.02182 1.22417 0.97082 0.88977 1.00580 1.64746 1.02829 1.12144 1.46341 1.23295 0.98395 0.94225 0.92978 1.22498 0.93464 0.97280 1.02720 1.22390 0.98551 0.94779 1.00299 1.22609 0.88627 1.00006 0.93351 0.90941 1.21290 0.98501 0.85496 0.91716 1.45235 1.57905 1.20685 1.15243 1.16252 0.80513 0.82277 0.81660 1.90860 1.44205 1.44767 1.72610 1.47665 1.56446 1.17927 1.14383 1.21837 0.93063 0.89706 0.96476 1.21894 0.96927 1.02200 0.95187 1.21491 0.99203 0.97714 0.95709 1.18903 0.92518 0.93373 0.93217 0.99885 1.21505 1.36383 1.00004 0.99709 0.91813 1.25933 0.96184 0.94766 1.02208 1.70108 1.41251 1.05332 1.38731 0.85596 0.78681 0.77476 0.79829 1.19227 1.21563 1.19100 1.21562 0.97468 1.01318 0.77478 0.91481 0.93416 0.90760 0.92053 0.92953 0.92203 0.90004 0.88782 0.91878 0.88880 0.91081 0.92241 0.93951 0.75727 0.90139 0.89097 0.87575 0.93380 0.92885 0.92293 0.93213 0.94850 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.50 71.98 0.68 -1.49 16 2 C 0.04 0.63 5.31 86.30 0.46 1.09 16 3 N -0.54 -10.58 5.00 -857.34 -4.29 -14.87 16 4 C 0.04 0.56 5.05 86.60 0.44 0.99 16 5 C -0.12 -1.67 7.06 31.80 0.22 -1.45 16 6 C -0.12 -1.84 6.57 31.47 0.21 -1.63 16 7 C 0.06 1.22 2.69 45.06 0.12 1.34 16 8 H 0.07 1.18 7.51 -2.39 -0.02 1.17 16 9 C 0.15 4.47 5.11 86.38 0.44 4.91 16 10 N -0.73 -23.54 5.23 -478.54 -2.50 -26.04 16 11 C 0.69 30.88 8.30 179.05 1.49 32.37 16 12 O -0.64 -35.95 15.78 -3.96 -0.06 -36.01 16 13 N -0.63 -26.86 2.97 -836.89 -2.49 -29.35 16 14 C 0.11 3.32 6.43 86.36 0.56 3.87 16 15 C -0.12 -3.75 6.08 30.67 0.19 -3.56 16 16 C -0.10 -4.08 5.11 30.62 0.16 -3.92 16 17 C 0.04 2.05 2.25 -11.46 -0.03 2.03 16 18 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 19 C -0.54 -30.39 8.56 25.60 0.22 -30.17 16 20 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 21 C 0.01 0.49 5.30 84.66 0.45 0.94 16 22 N -0.92 -57.73 11.41 21.45 0.24 -57.49 16 23 Si 0.96 45.33 29.54 68.60 2.03 47.36 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.14 7.60 5.39 86.36 0.47 8.07 16 28 H 0.07 0.81 6.72 -2.39 -0.02 0.80 16 29 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 1.19 5.38 -2.39 -0.01 1.18 16 32 H 0.05 0.70 7.72 -2.39 -0.02 0.68 16 33 H 0.06 0.69 7.90 -2.39 -0.02 0.67 16 34 H 0.08 1.21 7.71 -2.39 -0.02 1.19 16 35 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.07 1.21 7.69 -2.39 -0.02 1.19 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.40 10.27 3.30 -92.71 -0.31 9.96 16 42 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 43 H 0.09 2.06 5.08 -2.39 -0.01 2.05 16 44 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.06 2.20 8.14 -2.39 -0.02 2.19 16 48 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 49 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.07 4.60 5.16 -2.39 -0.01 4.59 16 Total: -1.00 -77.86 374.17 -0.40 -78.26 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.60 Total: 24.77 kcal Atomic # 6 Polarization: 7.32 SS G_CDS: 6.07 Total: 13.38 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -9.03 Total: -127.75 kcal Atomic # 8 Polarization: -35.95 SS G_CDS: -0.06 Total: -36.01 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.36 kcal Total: -77.86 -0.40 -78.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596391143.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.400 kcal (2) G-P(sol) polarization free energy of solvation -77.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds