Wall clock time and date at job start Tue Mar 31 2020 09:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46986 * 2 1 4 4 C 1.53001 * 109.47387 * 119.99541 * 2 1 3 5 5 C 1.52998 * 109.47255 * 185.00028 * 4 2 1 6 6 C 1.53004 * 109.46804 * 180.02562 * 5 4 2 7 7 C 1.52998 * 117.49398 * 175.00325 * 6 5 4 8 8 C 1.52999 * 60.00126 * 107.49039 * 7 6 5 9 9 N 1.46495 * 109.47386 * 240.00295 * 2 1 3 10 10 C 1.34775 * 120.00121 * 84.99499 * 9 2 1 11 11 O 1.21582 * 120.00171 * 355.03034 * 10 9 2 12 12 N 1.34783 * 119.99761 * 175.02384 * 10 9 2 13 13 C 1.47070 * 120.88237 * 4.94946 * 12 10 9 14 14 C 1.53693 * 108.28291 * 128.74923 * 13 12 10 15 15 N 1.46902 * 109.25494 * 54.07932 * 14 13 12 16 16 C 1.46903 * 111.00144 * 172.61158 * 15 14 13 17 17 C 1.50701 * 109.46764 * 294.30335 * 16 15 14 18 18 H 1.07992 * 120.00280 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99399 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00092 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99374 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47414 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46949 * 120.00116 * 21 19 17 24 24 H 1.48502 * 109.46910 * 239.99786 * 21 19 17 25 25 C 1.46904 * 111.26845 * 296.75984 * 15 14 13 26 26 C 1.47078 * 120.87955 * 185.21878 * 12 10 9 27 27 H 1.09003 * 109.47497 * 299.99743 * 1 2 3 28 28 H 1.09002 * 109.46970 * 60.00105 * 1 2 3 29 29 H 1.09004 * 109.46986 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46491 * 65.00262 * 4 2 1 31 31 H 1.09001 * 109.47325 * 305.00614 * 4 2 1 32 32 H 1.09001 * 109.46782 * 60.00423 * 5 4 2 33 33 H 1.09001 * 109.47433 * 300.00521 * 5 4 2 34 34 H 1.08999 * 115.56421 * 29.31577 * 6 5 4 35 35 H 1.08997 * 117.50531 * 0.02562 * 7 6 5 36 36 H 1.09002 * 117.49690 * 214.98446 * 7 6 5 37 37 H 1.08999 * 117.49903 * 107.48478 * 8 7 6 38 38 H 1.09001 * 117.49467 * 252.48766 * 8 7 6 39 39 H 0.97003 * 120.00139 * 264.99882 * 9 2 1 40 40 H 1.09003 * 109.62860 * 248.52027 * 13 12 10 41 41 H 1.09000 * 109.62970 * 9.09648 * 13 12 10 42 42 H 1.09006 * 109.64826 * 294.07838 * 14 13 12 43 43 H 1.08996 * 109.44847 * 173.95935 * 14 13 12 44 44 H 1.09002 * 109.46902 * 54.29787 * 16 15 14 45 45 H 1.08992 * 109.47102 * 174.29990 * 16 15 14 46 46 H 0.97006 * 120.00042 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.49182 * 303.14289 * 25 15 14 48 48 H 1.09003 * 109.49419 * 183.06561 * 25 15 14 49 49 H 1.09008 * 109.62927 * 350.89974 * 26 12 10 50 50 H 1.08995 * 109.62903 * 111.48054 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5649 -0.6132 1.3137 6 6 4.0749 -1.3349 2.5627 7 6 5.5899 -1.4416 2.7476 8 6 4.7768 -0.4914 3.6289 9 7 2.0184 -0.6905 -1.1961 10 6 2.1470 -0.0182 -2.3571 11 8 1.7734 1.1362 -2.4358 12 7 2.6900 -0.6254 -3.4309 13 6 3.0492 -2.0510 -3.3906 14 6 2.4218 -2.7410 -4.6122 15 7 2.8309 -2.0322 -5.8322 16 6 2.3985 -2.7589 -7.0334 17 6 3.1271 -4.0756 -7.1134 18 1 3.8403 -4.3454 -6.3488 19 6 2.8838 -4.9354 -8.1636 20 7 2.0155 -4.6065 -9.0950 21 14 3.7875 -6.5672 -8.2631 22 1 4.7036 -6.6974 -7.1017 23 1 2.8038 -7.6796 -8.2455 24 1 4.5737 -6.6216 -9.5218 25 6 2.3265 -0.6525 -5.8414 26 6 2.9445 0.1215 -4.6721 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.7517 -1.7715 1.2056 31 1 1.6054 -0.2617 2.1370 32 1 3.8531 0.4371 1.3573 33 1 3.9995 -1.0726 0.4260 34 1 3.4660 -2.1722 2.9037 35 1 6.2233 -0.9974 1.9798 36 1 5.9777 -2.3492 3.2102 37 1 4.6296 -0.7738 4.6713 38 1 4.8754 0.5777 3.4408 39 1 2.2491 -1.6317 -1.1526 40 1 4.1336 -2.1565 -3.4235 41 1 2.6624 -2.5003 -2.4759 42 1 1.3353 -2.7207 -4.5268 43 1 2.7635 -3.7749 -4.6604 44 1 1.3249 -2.9403 -6.9814 45 1 2.6241 -2.1644 -7.9186 46 1 1.8441 -5.2115 -9.8336 47 1 1.2414 -0.6613 -5.7389 48 1 2.5996 -0.1717 -6.7807 49 1 2.4883 1.1093 -4.6051 50 1 4.0189 0.2209 -4.8259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601597196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:07 Heat of formation + Delta-G solvation = -5.911434 kcal Electronic energy + Delta-G solvation = -26162.572626 eV Core-core repulsion = 22611.292501 eV Total energy + Delta-G solvation = -3551.280125 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.30465 -38.34113 -37.61522 -36.03257 -34.36941 -32.62269 -31.95063 -30.60696 -29.75680 -28.02594 -25.48922 -24.58829 -23.30335 -22.69112 -22.28183 -21.27351 -20.72628 -20.48177 -19.33505 -17.82280 -16.55097 -16.34005 -15.96708 -15.27992 -15.13913 -14.78151 -14.62664 -14.39435 -14.28875 -13.91604 -13.77528 -13.61556 -13.46082 -13.16981 -12.70938 -12.41176 -12.13872 -11.93489 -11.89436 -11.84238 -11.61581 -11.42882 -11.28786 -11.05505 -11.02479 -10.93649 -10.73971 -10.65298 -10.50680 -10.43766 -10.17207 -9.93401 -9.82470 -9.27146 -9.09566 -8.49837 -8.29691 -7.31559 -6.07430 -4.09431 2.77693 3.27420 3.35171 3.35325 3.39001 3.47979 3.96935 4.20377 4.37721 4.57993 4.61776 4.71300 4.79225 4.84205 4.98345 5.17150 5.26019 5.27892 5.30656 5.33024 5.40624 5.42843 5.46572 5.49465 5.58340 5.62540 5.67345 5.71751 5.77365 5.79021 5.83712 5.85958 5.96291 6.06526 6.09010 6.15538 6.31684 6.46204 6.47295 6.58391 6.69068 7.10753 7.22761 7.28565 7.73474 8.01183 8.06026 8.13435 8.47139 8.73888 8.98127 9.55137 11.03411 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.002862 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.301934 B = 9780.353055 C =10891.540084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.161 3.839 3 H 0.085 0.915 4 C -0.123 4.123 5 C -0.089 4.089 6 C -0.152 4.152 7 C -0.183 4.183 8 C -0.183 4.183 9 N -0.744 5.744 10 C 0.708 3.292 11 O -0.599 6.599 12 N -0.626 5.626 13 C 0.116 3.884 14 C 0.051 3.949 15 N -0.535 5.535 16 C 0.193 3.807 17 C -0.509 4.509 18 H 0.064 0.936 19 C 0.055 3.945 20 N -0.897 5.897 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.285 1.285 24 H -0.284 1.284 25 C 0.040 3.960 26 C 0.136 3.864 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.394 0.606 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.024 0.976 43 H 0.096 0.904 44 H -0.009 1.009 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.026 0.974 48 H 0.081 0.919 49 H 0.088 0.912 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.848 6.921 22.985 24.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.055 3.945 3 H 0.103 0.897 4 C -0.161 4.161 5 C -0.127 4.127 6 C -0.170 4.170 7 C -0.220 4.220 8 C -0.220 4.220 9 N -0.402 5.402 10 C 0.410 3.590 11 O -0.478 6.478 12 N -0.363 5.363 13 C -0.008 4.008 14 C -0.078 4.078 15 N -0.260 5.260 16 C 0.068 3.932 17 C -0.547 4.547 18 H 0.082 0.918 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.211 1.211 24 H -0.210 1.210 25 C -0.089 4.089 26 C 0.013 3.987 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.231 0.769 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.114 0.886 44 H 0.009 0.991 45 H 0.050 0.950 46 H 0.071 0.929 47 H 0.044 0.956 48 H 0.099 0.901 49 H 0.106 0.894 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.020 7.735 22.754 24.118 hybrid contribution -0.388 -1.574 -0.221 1.637 sum 1.632 6.161 22.533 23.417 Atomic orbital electron populations 1.22203 0.95606 1.02003 1.02490 1.20782 0.93695 0.97104 0.82894 0.89683 1.21890 0.95665 1.01225 0.97319 1.21189 0.95148 1.00143 0.96179 1.22369 0.94806 1.01838 0.97983 1.22968 0.94040 1.01712 1.03252 1.23035 1.05037 0.97615 0.96297 1.45394 1.72181 1.13685 1.08943 1.15839 0.78382 0.84522 0.80289 1.90869 1.56302 1.16862 1.83768 1.47395 1.65146 1.10917 1.12831 1.21934 1.00637 0.79920 0.98265 1.22392 0.96750 0.99245 0.89414 1.62071 1.59641 1.00727 1.03568 1.19733 0.94007 0.93333 0.86108 1.21174 1.23455 1.01391 1.08697 0.91763 1.25004 0.95394 0.98620 0.95624 1.69968 1.34366 1.36983 1.12348 0.86446 0.79536 0.83372 0.78074 1.19627 1.21141 1.20997 1.22431 0.96810 0.91780 0.97912 1.21618 1.00499 0.95164 0.81411 0.91966 0.91784 0.92655 0.91314 0.90267 0.91729 0.91268 0.87849 0.88777 0.88927 0.89078 0.88856 0.76915 0.90715 0.91309 0.95767 0.88614 0.99150 0.95001 0.92921 0.95562 0.90107 0.89361 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.48 37.16 0.35 -1.26 16 2 C 0.16 1.58 2.54 -67.93 -0.17 1.41 16 3 H 0.09 0.99 7.65 -51.93 -0.40 0.59 16 4 C -0.12 -0.87 4.71 -26.73 -0.13 -1.00 16 5 C -0.09 -0.68 5.38 -26.73 -0.14 -0.82 16 6 C -0.15 -1.07 5.74 -90.62 -0.52 -1.59 16 7 C -0.18 -1.30 10.25 -26.73 -0.27 -1.58 16 8 C -0.18 -1.23 10.18 -26.73 -0.27 -1.50 16 9 N -0.74 -8.54 4.44 -58.68 -0.26 -8.80 16 10 C 0.71 10.90 8.27 -86.91 -0.72 10.19 16 11 O -0.60 -11.17 15.47 5.29 0.08 -11.08 16 12 N -0.63 -9.59 3.00 -177.92 -0.53 -10.12 16 13 C 0.12 1.63 6.57 -3.37 -0.02 1.61 16 14 C 0.05 0.93 5.47 -3.46 -0.02 0.91 16 15 N -0.53 -11.11 4.62 -235.46 -1.09 -12.20 16 16 C 0.19 4.91 4.72 -4.97 -0.02 4.88 16 17 C -0.51 -13.79 8.41 -34.44 -0.29 -14.08 16 18 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 19 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 20 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 21 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C 0.04 0.73 5.62 -3.70 -0.02 0.71 16 26 C 0.14 2.18 6.61 -3.60 -0.02 2.15 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.06 0.53 7.88 -51.93 -0.41 0.12 16 33 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 34 H 0.10 0.68 8.07 -51.93 -0.42 0.26 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 39 H 0.39 3.83 6.14 -40.82 -0.25 3.58 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.07 0.76 5.73 -51.93 -0.30 0.46 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.10 1.83 6.67 -51.93 -0.35 1.48 16 44 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 45 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 46 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 47 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.08 1.42 7.99 -51.93 -0.41 1.01 16 49 H 0.09 1.42 7.04 -51.92 -0.37 1.05 16 50 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 393.23 15.07 5.93 5.93 Total: -1.00 -31.43 393.23 -11.67 -43.10 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -9.14 Total: 1.20 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -2.37 Total: 1.46 kcal Atomic # 7 Polarization: -55.51 SS G_CDS: -1.15 Total: -56.65 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.08 Total: -11.08 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.43 -11.67 -43.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601597196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.189 kcal (2) G-P(sol) polarization free energy of solvation -31.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds