Wall clock time and date at job start Tue Mar 31 2020 09:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46986 * 2 1 4 4 C 1.53001 * 109.47387 * 119.99541 * 2 1 3 5 5 C 1.52998 * 109.47255 * 185.00028 * 4 2 1 6 6 C 1.53004 * 109.46804 * 180.02562 * 5 4 2 7 7 C 1.52998 * 117.49398 * 175.00325 * 6 5 4 8 8 C 1.52999 * 60.00126 * 107.49039 * 7 6 5 9 9 N 1.46495 * 109.47386 * 240.00295 * 2 1 3 10 10 C 1.34775 * 120.00121 * 84.99499 * 9 2 1 11 11 O 1.21582 * 120.00171 * 355.03034 * 10 9 2 12 12 N 1.34783 * 119.99761 * 175.02384 * 10 9 2 13 13 C 1.47070 * 120.88237 * 4.94946 * 12 10 9 14 14 C 1.53693 * 108.28291 * 128.74923 * 13 12 10 15 15 N 1.46902 * 109.25494 * 54.07932 * 14 13 12 16 16 C 1.46903 * 111.00144 * 172.61158 * 15 14 13 17 17 C 1.50701 * 109.46764 * 294.30335 * 16 15 14 18 18 H 1.07992 * 120.00280 * 359.97438 * 17 16 15 19 19 C 1.37883 * 119.99399 * 180.02562 * 17 16 15 20 20 N 1.31510 * 120.00092 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99374 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47414 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.46949 * 120.00116 * 21 19 17 24 24 H 1.48502 * 109.46910 * 239.99786 * 21 19 17 25 25 C 1.46904 * 111.26845 * 296.75984 * 15 14 13 26 26 C 1.47078 * 120.87955 * 185.21878 * 12 10 9 27 27 H 1.09003 * 109.47497 * 299.99743 * 1 2 3 28 28 H 1.09002 * 109.46970 * 60.00105 * 1 2 3 29 29 H 1.09004 * 109.46986 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46491 * 65.00262 * 4 2 1 31 31 H 1.09001 * 109.47325 * 305.00614 * 4 2 1 32 32 H 1.09001 * 109.46782 * 60.00423 * 5 4 2 33 33 H 1.09001 * 109.47433 * 300.00521 * 5 4 2 34 34 H 1.08999 * 115.56421 * 29.31577 * 6 5 4 35 35 H 1.08997 * 117.50531 * 0.02562 * 7 6 5 36 36 H 1.09002 * 117.49690 * 214.98446 * 7 6 5 37 37 H 1.08999 * 117.49903 * 107.48478 * 8 7 6 38 38 H 1.09001 * 117.49467 * 252.48766 * 8 7 6 39 39 H 0.97003 * 120.00139 * 264.99882 * 9 2 1 40 40 H 1.09003 * 109.62860 * 248.52027 * 13 12 10 41 41 H 1.09000 * 109.62970 * 9.09648 * 13 12 10 42 42 H 1.09006 * 109.64826 * 294.07838 * 14 13 12 43 43 H 1.08996 * 109.44847 * 173.95935 * 14 13 12 44 44 H 1.09002 * 109.46902 * 54.29787 * 16 15 14 45 45 H 1.08992 * 109.47102 * 174.29990 * 16 15 14 46 46 H 0.97006 * 120.00042 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.49182 * 303.14289 * 25 15 14 48 48 H 1.09003 * 109.49419 * 183.06561 * 25 15 14 49 49 H 1.09008 * 109.62927 * 350.89974 * 26 12 10 50 50 H 1.08995 * 109.62903 * 111.48054 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7211 1.2493 5 6 3.5649 -0.6132 1.3137 6 6 4.0749 -1.3349 2.5627 7 6 5.5899 -1.4416 2.7476 8 6 4.7768 -0.4914 3.6289 9 7 2.0184 -0.6905 -1.1961 10 6 2.1470 -0.0182 -2.3571 11 8 1.7734 1.1362 -2.4358 12 7 2.6900 -0.6254 -3.4309 13 6 3.0492 -2.0510 -3.3906 14 6 2.4218 -2.7410 -4.6122 15 7 2.8309 -2.0322 -5.8322 16 6 2.3985 -2.7589 -7.0334 17 6 3.1271 -4.0756 -7.1134 18 1 3.8403 -4.3454 -6.3488 19 6 2.8838 -4.9354 -8.1636 20 7 2.0155 -4.6065 -9.0950 21 14 3.7875 -6.5672 -8.2631 22 1 4.7036 -6.6974 -7.1017 23 1 2.8038 -7.6796 -8.2455 24 1 4.5737 -6.6216 -9.5218 25 6 2.3265 -0.6525 -5.8414 26 6 2.9445 0.1215 -4.6721 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.7517 -1.7715 1.2056 31 1 1.6054 -0.2617 2.1370 32 1 3.8531 0.4371 1.3573 33 1 3.9995 -1.0726 0.4260 34 1 3.4660 -2.1722 2.9037 35 1 6.2233 -0.9974 1.9798 36 1 5.9777 -2.3492 3.2102 37 1 4.6296 -0.7738 4.6713 38 1 4.8754 0.5777 3.4408 39 1 2.2491 -1.6317 -1.1526 40 1 4.1336 -2.1565 -3.4235 41 1 2.6624 -2.5003 -2.4759 42 1 1.3353 -2.7207 -4.5268 43 1 2.7635 -3.7749 -4.6604 44 1 1.3249 -2.9403 -6.9814 45 1 2.6241 -2.1644 -7.9186 46 1 1.8441 -5.2115 -9.8336 47 1 1.2414 -0.6613 -5.7389 48 1 2.5996 -0.1717 -6.7807 49 1 2.4883 1.1093 -4.6051 50 1 4.0189 0.2209 -4.8259 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601597196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:06 Heat of formation + Delta-G solvation = -24.839788 kcal Electronic energy + Delta-G solvation = -26163.393421 eV Core-core repulsion = 22611.292501 eV Total energy + Delta-G solvation = -3552.100920 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50409 -39.38163 -38.60637 -36.97454 -35.94793 -34.46169 -33.08035 -31.84213 -30.63877 -29.74279 -27.17536 -25.33213 -24.70239 -23.94499 -23.19091 -22.54099 -21.65187 -21.21434 -20.59190 -19.04490 -18.48736 -17.55663 -16.77611 -16.61006 -16.36802 -16.09904 -15.99376 -15.58123 -15.38430 -15.21761 -14.94859 -14.80776 -14.61255 -14.20168 -14.10471 -13.64244 -13.50367 -13.15238 -12.93730 -12.75817 -12.60958 -12.53509 -12.42190 -12.39926 -12.30121 -12.23317 -12.11307 -12.03777 -11.78336 -11.66627 -11.26259 -11.16971 -10.99336 -10.72852 -10.62366 -10.18111 -9.57290 -9.04687 -8.19833 -6.30255 1.43430 1.44635 1.57744 1.64914 2.13539 2.41531 2.90945 2.95502 3.12791 3.22962 3.59231 3.94978 4.00940 4.05380 4.08224 4.09118 4.18643 4.21656 4.24662 4.33492 4.43482 4.50222 4.54811 4.59445 4.74906 4.79912 4.81916 4.83804 4.85327 4.93082 4.94036 5.00577 5.01958 5.10067 5.17663 5.21205 5.24247 5.26025 5.30617 5.35181 5.46134 5.51291 5.64484 5.67354 5.96510 6.03580 6.28197 6.55554 6.86013 6.97093 7.39875 7.56280 8.91832 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.015228 B = 0.002862 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.301934 B = 9780.353055 C =10891.540084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.159 3.841 3 H 0.066 0.934 4 C -0.111 4.111 5 C -0.087 4.087 6 C -0.151 4.151 7 C -0.191 4.191 8 C -0.183 4.183 9 N -0.729 5.729 10 C 0.705 3.295 11 O -0.634 6.634 12 N -0.630 5.630 13 C 0.128 3.872 14 C 0.051 3.949 15 N -0.537 5.537 16 C 0.208 3.792 17 C -0.519 4.519 18 H 0.071 0.929 19 C -0.001 4.001 20 N -0.937 5.937 21 Si 0.972 3.028 22 H -0.257 1.257 23 H -0.281 1.281 24 H -0.282 1.282 25 C 0.043 3.957 26 C 0.146 3.854 27 H 0.082 0.918 28 H 0.030 0.970 29 H 0.065 0.935 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.406 0.594 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.011 0.989 43 H 0.087 0.913 44 H -0.043 1.043 45 H 0.004 0.996 46 H 0.264 0.736 47 H 0.011 0.989 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 5.591 25.598 26.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.054 3.946 3 H 0.084 0.916 4 C -0.148 4.148 5 C -0.124 4.124 6 C -0.169 4.169 7 C -0.228 4.228 8 C -0.220 4.220 9 N -0.387 5.387 10 C 0.406 3.594 11 O -0.516 6.516 12 N -0.367 5.367 13 C 0.005 3.995 14 C -0.078 4.078 15 N -0.262 5.262 16 C 0.081 3.919 17 C -0.557 4.557 18 H 0.089 0.911 19 C -0.199 4.199 20 N -0.578 5.578 21 Si 0.796 3.204 22 H -0.180 1.180 23 H -0.207 1.207 24 H -0.208 1.208 25 C -0.086 4.086 26 C 0.022 3.978 27 H 0.101 0.899 28 H 0.049 0.951 29 H 0.084 0.916 30 H 0.102 0.898 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.106 0.894 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.109 0.891 39 H 0.244 0.756 40 H 0.105 0.895 41 H 0.124 0.876 42 H 0.029 0.971 43 H 0.106 0.894 44 H -0.025 1.025 45 H 0.023 0.977 46 H 0.072 0.928 47 H 0.029 0.971 48 H 0.100 0.900 49 H 0.105 0.895 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 3.082 6.392 25.420 26.392 hybrid contribution -0.760 -1.094 -1.015 1.674 sum 2.322 5.299 24.405 25.082 Atomic orbital electron populations 1.22161 0.95359 1.02441 1.01905 1.20914 0.93829 0.96509 0.83302 0.91616 1.21816 0.95153 1.01784 0.96092 1.21137 0.95469 0.99563 0.96246 1.22377 0.94749 1.02089 0.97691 1.23019 0.94173 1.02168 1.03426 1.23094 1.04649 0.97475 0.96767 1.45340 1.71088 1.14067 1.08162 1.15999 0.78081 0.84247 0.81025 1.90848 1.57721 1.18605 1.84431 1.47419 1.65232 1.11339 1.12682 1.21922 1.01099 0.78873 0.97603 1.22444 0.96305 0.99202 0.89867 1.62016 1.59570 1.01564 1.03004 1.19388 0.91869 0.93258 0.87347 1.21483 1.23424 1.01948 1.08848 0.91081 1.25964 0.96151 1.02633 0.95154 1.70108 1.36002 1.38572 1.13117 0.85296 0.78323 0.78340 0.78422 1.18044 1.20680 1.20797 1.22457 0.96039 0.90731 0.99378 1.21456 1.00855 0.94640 0.80800 0.89890 0.95052 0.91640 0.89820 0.88727 0.92733 0.92091 0.86833 0.89440 0.88289 0.88134 0.89095 0.75592 0.89545 0.87643 0.97066 0.89445 1.02509 0.97749 0.92771 0.97054 0.90044 0.89458 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 9.48 71.98 0.68 -2.19 16 2 C 0.16 2.86 2.54 44.99 0.11 2.97 16 3 H 0.07 1.47 7.65 -2.39 -0.02 1.46 16 4 C -0.11 -1.24 4.71 30.59 0.14 -1.10 16 5 C -0.09 -1.13 5.38 30.59 0.16 -0.96 16 6 C -0.15 -1.75 5.74 -10.79 -0.06 -1.81 16 7 C -0.19 -2.37 10.25 30.59 0.31 -2.06 16 8 C -0.18 -2.09 10.18 30.59 0.31 -1.78 16 9 N -0.73 -15.31 4.44 -457.82 -2.03 -17.34 16 10 C 0.70 20.97 8.27 179.05 1.48 22.45 16 11 O -0.63 -23.61 15.47 -3.98 -0.06 -23.67 16 12 N -0.63 -18.52 3.00 -835.06 -2.51 -21.02 16 13 C 0.13 3.32 6.57 86.50 0.57 3.89 16 14 C 0.05 1.82 5.47 86.54 0.47 2.29 16 15 N -0.54 -22.57 4.62 -898.86 -4.15 -26.72 16 16 C 0.21 10.95 4.72 85.56 0.40 11.35 16 17 C -0.52 -28.38 8.41 25.60 0.22 -28.16 16 18 H 0.07 3.72 7.13 -2.91 -0.02 3.70 16 19 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 20 N -0.94 -56.04 13.29 21.45 0.28 -55.75 16 21 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 22 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C 0.04 1.61 5.62 86.38 0.49 2.09 16 26 C 0.15 4.59 6.61 86.35 0.57 5.16 16 27 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.03 0.77 8.10 -2.39 -0.02 0.75 16 29 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.05 0.82 7.88 -2.39 -0.02 0.80 16 33 H 0.06 0.90 7.75 -2.39 -0.02 0.88 16 34 H 0.11 1.11 8.07 -2.39 -0.02 1.09 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.08 8.03 -2.39 -0.02 1.06 16 39 H 0.41 6.61 6.14 -92.71 -0.57 6.05 16 40 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 41 H 0.11 1.96 5.73 -2.39 -0.01 1.95 16 42 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 43 H 0.09 3.27 6.67 -2.39 -0.02 3.26 16 44 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 45 H 0.00 0.25 7.97 -2.39 -0.02 0.23 16 46 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 47 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.08 2.97 7.99 -2.39 -0.02 2.95 16 49 H 0.09 2.80 7.04 -2.38 -0.02 2.79 16 50 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 Total: -1.00 -69.59 393.23 0.22 -69.37 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.33 Total: 17.60 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 6.33 Total: 12.53 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -8.41 Total: -120.84 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.06 Total: -23.67 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -69.59 0.22 -69.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601597196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.533 kcal (2) G-P(sol) polarization free energy of solvation -69.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds