Wall clock time and date at job start Tue Mar 31 2020 09:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99956 * 2 1 4 4 O 1.21584 * 120.00399 * 179.97438 * 3 2 1 5 5 N 1.34786 * 119.99762 * 0.02562 * 3 2 1 6 6 C 1.46496 * 119.99644 * 179.97438 * 5 3 2 7 7 C 1.53040 * 109.46193 * 275.02354 * 6 5 3 8 8 C 1.53196 * 109.31354 * 178.60247 * 7 6 5 9 9 N 1.46934 * 108.76236 * 54.65543 * 8 7 6 10 10 C 1.36933 * 120.62716 * 126.36214 * 9 8 7 11 11 H 1.08002 * 120.00140 * 331.85933 * 10 9 8 12 12 C 1.38817 * 120.00163 * 151.86061 * 10 9 8 13 13 N 1.31618 * 119.99699 * 343.06958 * 12 10 9 14 14 Si 1.86796 * 120.00053 * 163.07069 * 12 10 9 15 15 H 1.48502 * 109.47186 * 60.00400 * 14 12 10 16 16 H 1.48502 * 109.46852 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47418 * 300.00117 * 14 12 10 18 18 C 1.46924 * 118.74079 * 306.38783 * 9 8 7 19 19 C 1.53048 * 109.45724 * 154.97377 * 6 5 3 20 20 C 1.46497 * 120.00182 * 180.02562 * 2 1 3 21 21 C 1.52998 * 109.47075 * 59.99883 * 20 2 1 22 22 C 1.53001 * 109.46821 * 179.97438 * 21 20 2 23 23 C 1.52993 * 109.47397 * 59.99988 * 22 21 20 24 24 C 1.53000 * 109.47543 * 300.00175 * 23 22 21 25 25 C 1.52999 * 109.47158 * 59.99244 * 24 23 22 26 26 H 1.09000 * 109.46923 * 269.99759 * 1 2 3 27 27 H 1.08998 * 109.47464 * 30.00039 * 1 2 3 28 28 H 1.09003 * 109.46980 * 150.00047 * 1 2 3 29 29 H 0.96999 * 120.00038 * 359.97438 * 5 3 2 30 30 H 1.08998 * 109.46357 * 35.00384 * 6 5 3 31 31 H 1.09003 * 109.49833 * 298.56981 * 7 6 5 32 32 H 1.08997 * 109.49469 * 58.66833 * 7 6 5 33 33 H 1.08998 * 109.59795 * 294.87160 * 8 7 6 34 34 H 1.08993 * 109.70418 * 174.50836 * 8 7 6 35 35 H 0.96997 * 120.00215 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.58053 * 293.81913 * 18 9 8 37 37 H 1.09000 * 109.70597 * 173.46664 * 18 9 8 38 38 H 1.09004 * 109.49347 * 301.33229 * 19 6 5 39 39 H 1.08993 * 109.49693 * 61.43099 * 19 6 5 40 40 H 1.09005 * 109.46984 * 179.97438 * 20 2 1 41 41 H 1.08995 * 109.47092 * 299.99833 * 21 20 2 42 42 H 1.09001 * 109.47120 * 60.00504 * 21 20 2 43 43 H 1.09005 * 109.47142 * 299.99925 * 22 21 20 44 44 H 1.09006 * 109.47281 * 180.02562 * 22 21 20 45 45 H 1.08999 * 109.47581 * 179.97438 * 23 22 21 46 46 H 1.09005 * 109.47027 * 59.99866 * 23 22 21 47 47 H 1.09005 * 109.46707 * 299.99887 * 24 23 22 48 48 H 1.08990 * 109.47599 * 179.97438 * 24 23 22 49 49 H 1.08994 * 109.47168 * 180.02562 * 25 24 23 50 50 H 1.09005 * 109.46787 * 60.00691 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1673 0.0005 5 7 1.4649 2.3345 0.0005 6 6 2.1974 3.6031 0.0011 7 6 2.5618 3.9809 1.4387 8 6 3.3577 5.2899 1.4324 9 7 2.5804 6.3122 0.7186 10 6 2.3071 7.5180 1.3072 11 1 2.2363 7.5903 2.3824 12 6 2.1210 8.6474 0.5218 13 7 2.5246 8.6517 -0.7309 14 14 1.2977 10.1612 1.2430 15 1 2.0915 10.6538 2.3974 16 1 1.2197 11.2228 0.2076 17 1 -0.0718 9.8107 1.6976 18 6 2.1014 6.0159 -0.6384 19 6 1.3199 4.6987 -0.6089 20 6 2.1975 -1.2687 -0.0006 21 6 1.8279 -2.0704 -1.2501 22 6 2.5935 -3.3951 -1.2510 23 6 2.2246 -4.1982 -0.0022 24 6 2.5941 -3.3965 1.2475 25 6 1.8286 -2.0718 1.2484 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 0.4949 2.3344 0.0005 30 1 3.1080 3.4970 -0.5885 31 1 1.6507 4.1117 2.0226 32 1 3.1671 3.1894 1.8804 33 1 4.3106 5.1359 0.9261 34 1 3.5367 5.6160 2.4568 35 1 2.3943 9.4407 -1.2798 36 1 2.9520 5.9212 -1.3135 37 1 1.4501 6.8196 -0.9820 38 1 1.0413 4.4182 -1.6247 39 1 0.4207 4.8226 -0.0056 40 1 3.2692 -1.0694 -0.0009 41 1 0.7563 -2.2696 -1.2502 42 1 2.0913 -1.4985 -2.1399 43 1 3.6651 -3.1955 -1.2512 44 1 2.3305 -3.9662 -2.1415 45 1 2.7696 -5.1422 -0.0030 46 1 1.1530 -4.3979 -0.0020 47 1 3.6657 -3.1969 1.2473 48 1 2.3308 -3.9685 2.1372 49 1 2.0922 -1.5005 2.1384 50 1 0.7570 -2.2714 1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609341610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:00 Heat of formation + Delta-G solvation = -24.169638 kcal Electronic energy + Delta-G solvation = -26719.104295 eV Core-core repulsion = 23167.032436 eV Total energy + Delta-G solvation = -3552.071860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.43118 -38.61748 -37.24676 -35.02330 -34.35533 -32.08023 -31.03868 -30.34853 -29.80432 -28.92827 -26.93243 -24.95848 -22.93587 -22.87413 -22.17094 -21.58678 -20.11971 -19.52626 -19.23569 -17.88026 -16.73519 -16.54639 -15.52533 -15.41913 -14.89766 -14.55730 -14.44987 -14.40298 -13.85532 -13.61796 -13.54029 -13.39846 -13.11721 -12.88834 -12.66355 -12.57943 -12.47169 -12.43622 -12.23418 -11.42366 -11.41808 -11.36979 -11.08217 -10.91654 -10.78322 -10.69641 -10.55391 -10.52067 -10.44961 -10.23673 -10.00382 -9.90492 -9.70604 -9.49377 -8.80743 -8.49357 -8.36680 -6.65545 -5.77256 -3.19276 2.71743 3.39124 3.39621 3.45169 3.46414 4.06954 4.41569 4.50849 4.51438 4.63598 4.86062 4.88717 4.96334 5.13294 5.20362 5.22767 5.32921 5.36479 5.37328 5.44118 5.45666 5.50054 5.55784 5.66068 5.75024 5.75684 5.83613 5.84795 5.94147 5.95086 6.09397 6.11573 6.14955 6.33613 6.40392 6.44473 6.57970 6.65670 6.65774 6.84584 6.96368 7.03499 7.13942 7.35140 7.64569 7.81106 8.13433 8.47119 8.80332 9.23218 9.86547 10.44028 11.31726 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.039054 B = 0.002558 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.776665 B =10944.338197 C =11033.733541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.633 5.633 3 C 0.704 3.296 4 O -0.590 6.590 5 N -0.739 5.739 6 C 0.168 3.832 7 C -0.138 4.138 8 C 0.148 3.852 9 N -0.593 5.593 10 C -0.252 4.252 11 H 0.065 0.935 12 C 0.001 3.999 13 N -0.904 5.904 14 Si 0.903 3.097 15 H -0.283 1.283 16 H -0.291 1.291 17 H -0.284 1.284 18 C 0.175 3.825 19 C -0.146 4.146 20 C 0.158 3.842 21 C -0.128 4.128 22 C -0.117 4.117 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.127 4.127 26 H 0.053 0.947 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.390 0.610 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.020 0.980 34 H 0.055 0.945 35 H 0.254 0.746 36 H 0.021 0.979 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.058 0.942 40 H 0.102 0.898 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.065 0.935 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.884 -24.526 0.002 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.371 5.371 3 C 0.405 3.595 4 O -0.468 6.468 5 N -0.393 5.393 6 C 0.064 3.936 7 C -0.179 4.179 8 C 0.021 3.979 9 N -0.316 5.316 10 C -0.381 4.381 11 H 0.083 0.917 12 C -0.197 4.197 13 N -0.548 5.548 14 Si 0.733 3.267 15 H -0.209 1.209 16 H -0.217 1.217 17 H -0.211 1.211 18 C 0.048 3.952 19 C -0.186 4.186 20 C 0.054 3.946 21 C -0.167 4.167 22 C -0.155 4.155 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.165 4.165 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.225 0.775 30 H 0.099 0.901 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.039 0.961 37 H 0.109 0.891 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.120 0.880 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.084 0.916 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.983 -24.322 -0.120 24.827 hybrid contribution -1.097 0.787 0.318 1.387 sum -6.081 -23.535 0.198 24.309 Atomic orbital electron populations 1.21653 0.80549 1.02763 1.01514 1.47099 1.05997 1.04905 1.79081 1.15966 0.85437 0.80403 0.77676 1.90895 1.11590 1.86095 1.58256 1.45691 1.09553 1.05029 1.79045 1.20906 0.95318 0.80156 0.97247 1.22381 1.00672 0.98907 0.95925 1.20877 0.92647 0.87838 0.96547 1.44085 1.59769 1.13217 1.14481 1.19152 1.42575 0.84883 0.91526 0.91720 1.25054 1.00720 0.97297 0.96631 1.70016 1.48038 1.29172 1.07594 0.86362 0.79749 0.82535 0.78076 1.20888 1.21657 1.21087 1.20731 0.96022 0.92085 0.86313 1.22540 0.99462 0.97635 0.98946 1.20914 0.98235 0.81481 0.94015 1.21901 1.00426 0.96139 0.98187 1.21498 1.00611 0.95499 0.97877 1.21559 1.01267 0.98292 0.94648 1.21501 1.00607 0.95542 0.97862 1.21886 1.00420 0.96043 0.98172 0.92892 0.91532 0.90986 0.77481 0.90133 0.92540 0.92747 0.96173 0.92633 0.93566 0.96107 0.89068 0.92850 0.92305 0.88004 0.91830 0.91580 0.91622 0.91786 0.91972 0.92061 0.91630 0.91789 0.91605 0.91890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 9.26 59.85 0.55 1.21 16 2 N -0.63 -7.52 2.76 -179.67 -0.50 -8.02 16 3 C 0.70 11.23 8.25 -86.91 -0.72 10.52 16 4 O -0.59 -11.83 15.33 5.29 0.08 -11.74 16 5 N -0.74 -11.14 4.94 -58.63 -0.29 -11.43 16 6 C 0.17 3.05 2.42 -67.89 -0.16 2.89 16 7 C -0.14 -2.64 5.65 -26.61 -0.15 -2.79 16 8 C 0.15 3.27 6.52 -3.70 -0.02 3.25 16 9 N -0.59 -15.05 2.99 -172.32 -0.52 -15.56 16 10 C -0.25 -6.95 9.58 -15.06 -0.14 -7.09 16 11 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 12 C 0.00 0.04 4.92 -17.43 -0.09 -0.05 16 13 N -0.90 -26.27 11.19 55.49 0.62 -25.65 16 14 Si 0.90 21.68 29.59 -169.99 -5.03 16.65 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 18 C 0.18 4.17 5.30 -3.71 -0.02 4.15 16 19 C -0.15 -2.73 5.55 -26.61 -0.15 -2.88 16 20 C 0.16 1.68 2.52 -67.93 -0.17 1.51 16 21 C -0.13 -1.11 5.18 -26.73 -0.14 -1.24 16 22 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 23 C -0.12 -0.78 5.92 -26.73 -0.16 -0.94 16 24 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 25 C -0.13 -1.11 5.21 -26.73 -0.14 -1.25 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.51 6.36 -51.93 -0.33 0.18 16 28 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 29 H 0.39 4.84 6.33 -40.82 -0.26 4.58 16 30 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 31 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 35 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.09 2.40 6.06 -51.93 -0.31 2.08 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.10 1.37 6.90 -51.93 -0.36 1.01 16 41 H 0.06 0.48 6.66 -51.93 -0.35 0.13 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -31.81 376.51 -10.81 -42.63 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -9.04 Total: 2.20 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -1.82 Total: 5.25 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.68 Total: -60.65 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.81 -10.81 -42.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.456 kcal (2) G-P(sol) polarization free energy of solvation -31.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds