Wall clock time and date at job start Tue Mar 31 2020 09:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34777 * 119.99956 * 2 1 4 4 O 1.21584 * 120.00399 * 179.97438 * 3 2 1 5 5 N 1.34786 * 119.99762 * 0.02562 * 3 2 1 6 6 C 1.46496 * 119.99644 * 179.97438 * 5 3 2 7 7 C 1.53040 * 109.46193 * 275.02354 * 6 5 3 8 8 C 1.53196 * 109.31354 * 178.60247 * 7 6 5 9 9 N 1.46934 * 108.76236 * 54.65543 * 8 7 6 10 10 C 1.36933 * 120.62716 * 126.36214 * 9 8 7 11 11 H 1.08002 * 120.00140 * 331.85933 * 10 9 8 12 12 C 1.38817 * 120.00163 * 151.86061 * 10 9 8 13 13 N 1.31618 * 119.99699 * 343.06958 * 12 10 9 14 14 Si 1.86796 * 120.00053 * 163.07069 * 12 10 9 15 15 H 1.48502 * 109.47186 * 60.00400 * 14 12 10 16 16 H 1.48502 * 109.46852 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47418 * 300.00117 * 14 12 10 18 18 C 1.46924 * 118.74079 * 306.38783 * 9 8 7 19 19 C 1.53048 * 109.45724 * 154.97377 * 6 5 3 20 20 C 1.46497 * 120.00182 * 180.02562 * 2 1 3 21 21 C 1.52998 * 109.47075 * 59.99883 * 20 2 1 22 22 C 1.53001 * 109.46821 * 179.97438 * 21 20 2 23 23 C 1.52993 * 109.47397 * 59.99988 * 22 21 20 24 24 C 1.53000 * 109.47543 * 300.00175 * 23 22 21 25 25 C 1.52999 * 109.47158 * 59.99244 * 24 23 22 26 26 H 1.09000 * 109.46923 * 269.99759 * 1 2 3 27 27 H 1.08998 * 109.47464 * 30.00039 * 1 2 3 28 28 H 1.09003 * 109.46980 * 150.00047 * 1 2 3 29 29 H 0.96999 * 120.00038 * 359.97438 * 5 3 2 30 30 H 1.08998 * 109.46357 * 35.00384 * 6 5 3 31 31 H 1.09003 * 109.49833 * 298.56981 * 7 6 5 32 32 H 1.08997 * 109.49469 * 58.66833 * 7 6 5 33 33 H 1.08998 * 109.59795 * 294.87160 * 8 7 6 34 34 H 1.08993 * 109.70418 * 174.50836 * 8 7 6 35 35 H 0.96997 * 120.00215 * 179.97438 * 13 12 10 36 36 H 1.09002 * 109.58053 * 293.81913 * 18 9 8 37 37 H 1.09000 * 109.70597 * 173.46664 * 18 9 8 38 38 H 1.09004 * 109.49347 * 301.33229 * 19 6 5 39 39 H 1.08993 * 109.49693 * 61.43099 * 19 6 5 40 40 H 1.09005 * 109.46984 * 179.97438 * 20 2 1 41 41 H 1.08995 * 109.47092 * 299.99833 * 21 20 2 42 42 H 1.09001 * 109.47120 * 60.00504 * 21 20 2 43 43 H 1.09005 * 109.47142 * 299.99925 * 22 21 20 44 44 H 1.09006 * 109.47281 * 180.02562 * 22 21 20 45 45 H 1.08999 * 109.47581 * 179.97438 * 23 22 21 46 46 H 1.09005 * 109.47027 * 59.99866 * 23 22 21 47 47 H 1.09005 * 109.46707 * 299.99887 * 24 23 22 48 48 H 1.08990 * 109.47599 * 179.97438 * 24 23 22 49 49 H 1.08994 * 109.47168 * 180.02562 * 25 24 23 50 50 H 1.09005 * 109.46787 * 60.00691 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1673 0.0005 5 7 1.4649 2.3345 0.0005 6 6 2.1974 3.6031 0.0011 7 6 2.5618 3.9809 1.4387 8 6 3.3577 5.2899 1.4324 9 7 2.5804 6.3122 0.7186 10 6 2.3071 7.5180 1.3072 11 1 2.2363 7.5903 2.3824 12 6 2.1210 8.6474 0.5218 13 7 2.5246 8.6517 -0.7309 14 14 1.2977 10.1612 1.2430 15 1 2.0915 10.6538 2.3974 16 1 1.2197 11.2228 0.2076 17 1 -0.0718 9.8107 1.6976 18 6 2.1014 6.0159 -0.6384 19 6 1.3199 4.6987 -0.6089 20 6 2.1975 -1.2687 -0.0006 21 6 1.8279 -2.0704 -1.2501 22 6 2.5935 -3.3951 -1.2510 23 6 2.2246 -4.1982 -0.0022 24 6 2.5941 -3.3965 1.2475 25 6 1.8286 -2.0718 1.2484 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5138 29 1 0.4949 2.3344 0.0005 30 1 3.1080 3.4970 -0.5885 31 1 1.6507 4.1117 2.0226 32 1 3.1671 3.1894 1.8804 33 1 4.3106 5.1359 0.9261 34 1 3.5367 5.6160 2.4568 35 1 2.3943 9.4407 -1.2798 36 1 2.9520 5.9212 -1.3135 37 1 1.4501 6.8196 -0.9820 38 1 1.0413 4.4182 -1.6247 39 1 0.4207 4.8226 -0.0056 40 1 3.2692 -1.0694 -0.0009 41 1 0.7563 -2.2696 -1.2502 42 1 2.0913 -1.4985 -2.1399 43 1 3.6651 -3.1955 -1.2512 44 1 2.3305 -3.9662 -2.1415 45 1 2.7696 -5.1422 -0.0030 46 1 1.1530 -4.3979 -0.0020 47 1 3.6657 -3.1969 1.2473 48 1 2.3308 -3.9685 2.1372 49 1 2.0922 -1.5005 2.1384 50 1 0.7570 -2.2714 1.2485 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609341610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:54:59 Heat of formation + Delta-G solvation = -42.559075 kcal Electronic energy + Delta-G solvation = -26719.901721 eV Core-core repulsion = 23167.032436 eV Total energy + Delta-G solvation = -3552.869286 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.55884 -39.71210 -38.70554 -36.06538 -35.95023 -33.85912 -31.88310 -31.67990 -31.35354 -30.16407 -27.79585 -26.81019 -24.23921 -23.85755 -23.52111 -22.92955 -21.25263 -20.87646 -20.29592 -19.20832 -18.45429 -17.71510 -16.87521 -16.59403 -16.32188 -15.93034 -15.45752 -15.35204 -15.11455 -15.07831 -14.80960 -14.67346 -14.54723 -14.11856 -13.98117 -13.73149 -13.30537 -13.24626 -13.17638 -13.07838 -12.99608 -12.56302 -12.51777 -12.23992 -12.06924 -12.05346 -12.02697 -11.88036 -11.57275 -11.53894 -11.36408 -11.26435 -11.17052 -11.05002 -10.55233 -10.11409 -9.44806 -8.71488 -7.87745 -5.33781 1.49119 1.50724 1.58251 1.63531 2.14888 2.52296 2.98016 3.28455 3.65235 3.72299 3.84618 3.88759 4.01620 4.05564 4.20450 4.23804 4.32854 4.33030 4.44803 4.47875 4.53328 4.58961 4.63714 4.69032 4.70657 4.78610 4.83094 4.86752 4.91944 4.98520 5.05293 5.12652 5.14082 5.14690 5.20675 5.22799 5.28137 5.35097 5.42561 5.45530 5.53147 5.57803 5.63084 5.64757 5.71156 5.99979 6.38731 7.00447 7.14115 7.58902 7.83261 8.37000 9.19465 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.039054 B = 0.002558 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.776665 B =10944.338197 C =11033.733541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.626 5.626 3 C 0.697 3.303 4 O -0.639 6.639 5 N -0.726 5.726 6 C 0.180 3.820 7 C -0.122 4.122 8 C 0.146 3.854 9 N -0.608 5.608 10 C -0.265 4.265 11 H 0.067 0.933 12 C -0.050 4.050 13 N -0.936 5.936 14 Si 0.971 3.029 15 H -0.277 1.277 16 H -0.294 1.294 17 H -0.275 1.275 18 C 0.179 3.821 19 C -0.126 4.126 20 C 0.153 3.847 21 C -0.120 4.120 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.117 4.117 25 C -0.119 4.119 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.096 0.904 29 H 0.408 0.592 30 H 0.052 0.948 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.005 0.995 34 H 0.058 0.942 35 H 0.251 0.749 36 H -0.007 1.007 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.048 0.952 43 H 0.051 0.949 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.077 0.923 49 H 0.047 0.953 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.603 -26.536 0.689 27.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.362 5.362 3 C 0.399 3.601 4 O -0.521 6.521 5 N -0.382 5.382 6 C 0.075 3.925 7 C -0.162 4.162 8 C 0.019 3.981 9 N -0.332 5.332 10 C -0.395 4.395 11 H 0.085 0.915 12 C -0.245 4.245 13 N -0.582 5.582 14 Si 0.799 3.201 15 H -0.203 1.203 16 H -0.220 1.220 17 H -0.200 1.200 18 C 0.053 3.947 19 C -0.166 4.166 20 C 0.050 3.950 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.152 4.152 24 C -0.155 4.155 25 C -0.157 4.157 26 H 0.085 0.915 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.246 0.754 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.023 0.977 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.011 0.989 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.103 0.897 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.097 0.903 45 H 0.091 0.909 46 H 0.093 0.907 47 H 0.070 0.930 48 H 0.096 0.904 49 H 0.066 0.934 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.759 -26.394 0.582 27.517 hybrid contribution -0.183 1.356 0.103 1.372 sum -7.942 -25.038 0.685 26.276 Atomic orbital electron populations 1.21958 0.77785 1.04460 1.02953 1.47177 1.07675 1.03815 1.77537 1.16166 0.84963 0.81451 0.77551 1.90867 1.13952 1.86901 1.60345 1.45287 1.10166 1.03741 1.79030 1.20490 0.94522 0.81450 0.96070 1.22165 1.00428 0.96919 0.96704 1.20951 0.92318 0.88713 0.96076 1.44340 1.60512 1.13397 1.14957 1.19490 1.42253 0.85901 0.91889 0.91487 1.25843 1.01454 1.00182 0.97039 1.70181 1.49317 1.29800 1.08884 0.85295 0.78955 0.78735 0.77163 1.20323 1.22022 1.20044 1.20558 0.95025 0.93879 0.85222 1.22251 0.98814 0.94854 1.00695 1.21017 0.96269 0.81454 0.96299 1.21843 1.01811 0.96128 0.96094 1.21510 0.99656 0.95087 0.99195 1.21538 1.02250 0.98204 0.93253 1.21513 0.99649 0.95111 0.99199 1.21821 1.01737 0.96064 0.96101 0.91504 0.90719 0.88519 0.75445 0.92939 0.91560 0.92709 0.97669 0.92374 0.93967 0.98853 0.91663 0.90584 0.91056 0.91731 0.89697 0.93273 0.92995 0.90340 0.90931 0.90657 0.92988 0.90406 0.93398 0.89873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 9.26 127.77 1.18 2.11 16 2 N -0.63 -13.98 2.76 -840.60 -2.32 -16.30 16 3 C 0.70 22.00 8.25 179.05 1.48 23.48 16 4 O -0.64 -26.43 15.33 -3.98 -0.06 -26.49 16 5 N -0.73 -20.93 4.94 -457.67 -2.26 -23.19 16 6 C 0.18 6.51 2.42 45.02 0.11 6.62 16 7 C -0.12 -4.61 5.65 30.67 0.17 -4.44 16 8 C 0.15 6.56 6.52 86.36 0.56 7.13 16 9 N -0.61 -31.42 2.99 -699.09 -2.09 -33.51 16 10 C -0.27 -14.75 9.58 84.04 0.81 -13.95 16 11 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 12 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 13 N -0.94 -55.67 11.19 21.65 0.24 -55.43 16 14 Si 0.97 44.73 29.59 68.60 2.03 46.76 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 C 0.18 8.75 5.30 86.36 0.46 9.21 16 19 C -0.13 -4.63 5.55 30.67 0.17 -4.46 16 20 C 0.15 3.17 2.52 44.99 0.11 3.28 16 21 C -0.12 -1.87 5.18 30.59 0.16 -1.71 16 22 C -0.12 -1.50 5.92 30.59 0.18 -1.32 16 23 C -0.12 -1.18 5.92 30.59 0.18 -1.00 16 24 C -0.12 -1.52 5.92 30.59 0.18 -1.34 16 25 C -0.12 -1.88 5.21 30.59 0.16 -1.72 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.07 0.88 6.36 -2.39 -0.02 0.87 16 28 H 0.10 0.83 6.43 -2.39 -0.02 0.82 16 29 H 0.41 8.97 6.33 -92.71 -0.59 8.38 16 30 H 0.05 2.23 7.58 -2.39 -0.02 2.21 16 31 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 34 H 0.06 2.54 7.93 -2.39 -0.02 2.52 16 35 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 36 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 37 H 0.07 3.52 6.06 -2.39 -0.01 3.51 16 38 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 40 H 0.06 1.83 6.90 -2.38 -0.02 1.82 16 41 H 0.08 0.97 6.66 -2.39 -0.02 0.95 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 44 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 47 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 48 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.08 1.00 7.67 -2.38 -0.02 0.98 16 Total: -1.00 -71.47 376.51 2.18 -69.29 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.32 Total: 19.38 kcal Atomic # 6 Polarization: 13.17 SS G_CDS: 6.33 Total: 19.50 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -6.43 Total: -128.44 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.06 Total: -26.49 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.47 2.18 -69.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.732 kcal (2) G-P(sol) polarization free energy of solvation -71.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds