Wall clock time and date at job start Tue Mar 31 2020 09:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47565 * 2 1 4 4 C 1.46495 * 119.99862 * 89.99676 * 3 2 1 5 5 C 1.53004 * 109.47191 * 270.00149 * 4 3 2 6 6 C 1.52999 * 109.47039 * 180.02562 * 5 4 3 7 7 C 1.53000 * 117.49750 * 243.74880 * 6 5 4 8 8 C 1.53003 * 117.49871 * 175.08969 * 6 5 4 9 9 C 1.34775 * 120.00225 * 270.00483 * 3 2 1 10 10 O 1.21586 * 120.00380 * 179.97438 * 9 3 2 11 11 N 1.34785 * 119.99941 * 359.97438 * 9 3 2 12 12 C 1.46496 * 120.00065 * 180.02562 * 11 9 3 13 13 C 1.53039 * 109.45866 * 275.02409 * 12 11 9 14 14 C 1.53193 * 109.31049 * 178.60040 * 13 12 11 15 15 N 1.46928 * 108.76441 * 54.65574 * 14 13 12 16 16 C 1.36946 * 120.62618 * 126.40383 * 15 14 13 17 17 H 1.07995 * 120.00087 * 331.82664 * 16 15 14 18 18 C 1.38809 * 119.99597 * 151.83275 * 16 15 14 19 19 N 1.31617 * 120.00265 * 343.06539 * 18 16 15 20 20 Si 1.86806 * 120.00053 * 163.07060 * 18 16 15 21 21 H 1.48500 * 109.46658 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47425 * 119.99546 * 20 18 16 23 23 H 1.48498 * 109.47035 * 239.99785 * 20 18 16 24 24 C 1.46921 * 118.73975 * 306.38619 * 15 14 13 25 25 C 1.53048 * 109.45722 * 154.97051 * 12 11 9 26 26 H 1.09001 * 109.47408 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47419 * 300.00224 * 1 2 3 28 28 H 1.09005 * 109.46890 * 60.00326 * 1 2 3 29 29 H 1.09000 * 109.47042 * 239.99668 * 2 1 3 30 30 H 1.09003 * 109.47161 * 120.00403 * 2 1 3 31 31 H 1.09000 * 109.47266 * 150.00664 * 4 3 2 32 32 H 1.08995 * 109.47422 * 30.00403 * 4 3 2 33 33 H 1.08994 * 109.47231 * 299.99883 * 5 4 3 34 34 H 1.08994 * 109.46771 * 60.00481 * 5 4 3 35 35 H 1.08998 * 115.55260 * 29.41417 * 6 5 4 36 36 H 1.09000 * 117.50102 * 0.02562 * 7 6 5 37 37 H 1.09005 * 117.49773 * 145.02349 * 7 6 5 38 38 H 1.09006 * 117.49927 * 214.97702 * 8 6 5 39 39 H 1.08994 * 117.49754 * 359.97438 * 8 6 5 40 40 H 0.96997 * 119.99557 * 0.02562 * 11 9 3 41 41 H 1.09000 * 109.46322 * 35.00332 * 12 11 9 42 42 H 1.08995 * 109.49863 * 298.56657 * 13 12 11 43 43 H 1.09000 * 109.49360 * 58.67065 * 13 12 11 44 44 H 1.09006 * 109.60067 * 294.86905 * 14 13 12 45 45 H 1.08996 * 109.70463 * 174.50771 * 14 13 12 46 46 H 0.96998 * 120.00506 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.58333 * 293.81314 * 24 15 14 48 48 H 1.09009 * 109.70441 * 173.46578 * 24 15 14 49 49 H 1.08996 * 109.49876 * 301.33258 * 25 12 11 50 50 H 1.08995 * 109.49390 * 61.43784 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0717 1.2687 5 6 0.9875 2.7930 1.7103 6 6 1.2427 3.5148 3.0351 7 6 0.4434 3.0544 4.2557 8 6 0.1192 4.3935 3.5887 9 6 2.2430 2.0165 -1.1672 10 8 2.6479 3.1630 -1.1672 11 7 2.0187 1.3810 -2.3345 12 6 2.2633 2.0715 -3.6031 13 6 1.0298 2.8942 -3.9820 14 6 1.3021 3.6421 -5.2909 15 7 1.7166 2.6711 -6.3127 16 6 1.0720 2.6101 -7.5194 17 1 0.0348 2.9019 -7.5929 18 6 1.7518 2.1730 -8.6479 19 7 3.0674 2.1359 -8.6506 20 14 0.7993 1.6377 -10.1631 21 1 -0.6570 1.7726 -9.9055 22 1 1.1800 2.4937 -11.3153 23 1 1.1175 0.2206 -10.4728 24 6 2.8361 1.7673 -6.0153 25 6 2.5468 1.0405 -4.6982 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0644 2.7984 1.1384 32 1 2.5506 1.3451 2.0284 33 1 0.6995 3.5197 0.9508 34 1 0.1856 2.0664 1.8407 35 1 2.2681 3.8453 3.2004 36 1 -0.2640 2.2371 4.1152 37 1 0.9428 3.0826 5.2242 38 1 0.4055 5.3020 4.1186 39 1 -0.8016 4.4577 3.0089 40 1 1.6953 0.4666 -2.3344 41 1 3.1227 2.7335 -3.4965 42 1 0.1757 2.2299 -4.1132 43 1 0.8146 3.6124 -3.1908 44 1 2.0970 4.3719 -5.1365 45 1 0.3962 4.1524 -5.6179 46 1 3.5425 1.8308 -9.4394 47 1 3.7561 2.3441 -5.9201 48 1 2.9434 1.0385 -6.8189 49 1 3.4113 0.4393 -4.4169 50 1 1.6782 0.3940 -4.8226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612840601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:17 Heat of formation + Delta-G solvation = 9.822132 kcal Electronic energy + Delta-G solvation = -26523.619962 eV Core-core repulsion = 22973.022096 eV Total energy + Delta-G solvation = -3550.597866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.28024 -38.08084 -37.39377 -35.89631 -34.44112 -32.30073 -31.47782 -30.19477 -29.75713 -28.91068 -25.16636 -23.80327 -23.54324 -22.62994 -22.17835 -21.65760 -20.66473 -19.74742 -19.19370 -17.98542 -16.72912 -16.38282 -16.05680 -15.08144 -14.98673 -14.65900 -14.54508 -14.19811 -13.99135 -13.72451 -13.57444 -13.48381 -13.21630 -12.92110 -12.56911 -12.39650 -12.28570 -12.17244 -11.82562 -11.62690 -11.54312 -11.41514 -11.11249 -11.04666 -10.76191 -10.71103 -10.58927 -10.43856 -10.22758 -10.09181 -9.99991 -9.90650 -9.70665 -9.49324 -8.85051 -8.51012 -8.37699 -6.65779 -5.77677 -3.19685 2.72419 3.37620 3.39732 3.45668 3.48011 3.54422 4.02492 4.44197 4.51001 4.63560 4.65912 4.69616 4.94186 4.96654 5.06127 5.16985 5.32014 5.36364 5.36913 5.44070 5.44940 5.50449 5.54929 5.56626 5.63682 5.65986 5.81099 5.83328 5.89741 5.94394 5.97873 6.12383 6.17206 6.33419 6.40129 6.45476 6.57455 6.64894 6.65484 6.84278 6.95295 7.03400 7.13261 7.35019 7.64529 7.81479 8.13754 8.46710 8.81216 9.22898 9.86235 10.43550 11.31271 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.002663 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.629390 B =10510.688072 C =10728.102249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.108 3.892 3 N -0.635 5.635 4 C 0.139 3.861 5 C -0.106 4.106 6 C -0.148 4.148 7 C -0.183 4.183 8 C -0.181 4.181 9 C 0.704 3.296 10 O -0.588 6.588 11 N -0.739 5.739 12 C 0.168 3.832 13 C -0.138 4.138 14 C 0.148 3.852 15 N -0.593 5.593 16 C -0.250 4.250 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.289 1.289 24 C 0.175 3.825 25 C -0.146 4.146 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.390 0.610 41 H 0.081 0.919 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.055 0.945 46 H 0.253 0.747 47 H 0.021 0.979 48 H 0.091 0.909 49 H 0.053 0.947 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.924 -5.108 23.688 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.016 4.016 3 N -0.372 5.372 4 C 0.015 3.985 5 C -0.144 4.144 6 C -0.166 4.166 7 C -0.220 4.220 8 C -0.218 4.218 9 C 0.405 3.595 10 O -0.466 6.466 11 N -0.394 5.394 12 C 0.064 3.936 13 C -0.178 4.178 14 C 0.021 3.979 15 N -0.316 5.316 16 C -0.379 4.379 17 H 0.084 0.916 18 C -0.198 4.198 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.216 1.216 24 C 0.048 3.952 25 C -0.186 4.186 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.123 0.877 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.225 0.775 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.038 0.962 45 H 0.073 0.927 46 H 0.063 0.937 47 H 0.039 0.961 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.503 -4.299 23.506 24.151 hybrid contribution -0.695 -0.805 -0.711 1.279 sum -4.198 -5.104 22.794 23.733 Atomic orbital electron populations 1.22318 0.96010 1.02201 1.02896 1.21464 0.94462 0.82858 1.02831 1.47214 1.70851 1.14017 1.05127 1.21250 0.97507 0.96377 0.83336 1.21644 0.98449 0.99208 0.95146 1.22248 0.97093 1.03141 0.94164 1.23048 1.03726 0.98243 0.96937 1.22960 1.00158 0.94542 1.04144 1.15971 0.78541 0.84556 0.80402 1.90910 1.52930 1.16562 1.86167 1.45699 1.71415 1.17194 1.05050 1.20901 0.98383 0.94157 0.80185 1.22372 0.97383 0.99191 0.98883 1.20877 0.97916 0.91265 0.87863 1.44104 1.37819 1.36478 1.13176 1.19232 0.93136 1.40742 0.84834 0.91635 1.25056 0.95237 1.02164 0.97305 1.70034 1.05528 1.50234 1.28997 0.86233 0.79447 0.78119 0.83047 1.20286 1.21738 1.21603 1.20732 0.89209 0.93132 0.92097 1.22537 1.00510 0.97891 0.97638 0.91614 0.92124 0.92101 0.90832 0.90355 0.89832 0.90931 0.90962 0.91743 0.87654 0.88966 0.89026 0.88881 0.88866 0.77515 0.90135 0.92572 0.92764 0.96182 0.92655 0.93677 0.96105 0.89071 0.92843 0.92321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 10.24 37.16 0.38 -0.97 16 2 C 0.11 0.88 5.94 -4.05 -0.02 0.85 16 3 N -0.63 -7.26 2.47 -179.43 -0.44 -7.70 16 4 C 0.14 1.40 5.41 -4.04 -0.02 1.38 16 5 C -0.11 -1.02 5.82 -26.73 -0.16 -1.18 16 6 C -0.15 -1.24 5.73 -90.62 -0.52 -1.76 16 7 C -0.18 -1.30 10.18 -26.69 -0.27 -1.57 16 8 C -0.18 -1.44 10.25 -26.69 -0.27 -1.72 16 9 C 0.70 10.98 8.24 -86.91 -0.72 10.26 16 10 O -0.59 -11.58 15.58 5.29 0.08 -11.50 16 11 N -0.74 -10.97 4.94 -58.63 -0.29 -11.26 16 12 C 0.17 3.03 2.42 -67.89 -0.16 2.86 16 13 C -0.14 -2.61 5.65 -26.61 -0.15 -2.76 16 14 C 0.15 3.25 6.52 -3.71 -0.02 3.23 16 15 N -0.59 -14.99 2.99 -172.32 -0.52 -15.50 16 16 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 17 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 18 C 0.00 0.02 4.92 -17.43 -0.09 -0.07 16 19 N -0.90 -26.21 11.19 55.49 0.62 -25.59 16 20 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C 0.17 4.15 5.30 -3.72 -0.02 4.13 16 25 C -0.15 -2.71 5.55 -26.61 -0.15 -2.86 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.46 6.26 -51.93 -0.33 0.14 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.58 6.36 -51.93 -0.33 0.25 16 30 H 0.08 0.49 7.89 -51.93 -0.41 0.08 16 31 H 0.08 1.01 7.42 -51.93 -0.39 0.62 16 32 H 0.07 0.56 7.89 -51.93 -0.41 0.15 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.57 6.00 -51.93 -0.31 0.26 16 35 H 0.11 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.09 0.62 8.03 -51.93 -0.42 0.20 16 37 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.39 4.80 6.33 -40.82 -0.26 4.54 16 41 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.05 1.19 7.93 -51.93 -0.41 0.78 16 46 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.09 2.39 6.07 -51.92 -0.31 2.08 16 49 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 50 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -31.77 389.58 -11.05 -42.83 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -9.01 Total: 3.44 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -2.34 Total: 2.81 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.63 Total: -60.06 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.08 Total: -11.50 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.77 -11.05 -42.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612840601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.648 kcal (2) G-P(sol) polarization free energy of solvation -31.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds