Wall clock time and date at job start Tue Mar 31 2020 09:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46494 * 109.47565 * 2 1 4 4 C 1.46495 * 119.99862 * 89.99676 * 3 2 1 5 5 C 1.53004 * 109.47191 * 270.00149 * 4 3 2 6 6 C 1.52999 * 109.47039 * 180.02562 * 5 4 3 7 7 C 1.53000 * 117.49750 * 243.74880 * 6 5 4 8 8 C 1.53003 * 117.49871 * 175.08969 * 6 5 4 9 9 C 1.34775 * 120.00225 * 270.00483 * 3 2 1 10 10 O 1.21586 * 120.00380 * 179.97438 * 9 3 2 11 11 N 1.34785 * 119.99941 * 359.97438 * 9 3 2 12 12 C 1.46496 * 120.00065 * 180.02562 * 11 9 3 13 13 C 1.53039 * 109.45866 * 275.02409 * 12 11 9 14 14 C 1.53193 * 109.31049 * 178.60040 * 13 12 11 15 15 N 1.46928 * 108.76441 * 54.65574 * 14 13 12 16 16 C 1.36946 * 120.62618 * 126.40383 * 15 14 13 17 17 H 1.07995 * 120.00087 * 331.82664 * 16 15 14 18 18 C 1.38809 * 119.99597 * 151.83275 * 16 15 14 19 19 N 1.31617 * 120.00265 * 343.06539 * 18 16 15 20 20 Si 1.86806 * 120.00053 * 163.07060 * 18 16 15 21 21 H 1.48500 * 109.46658 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47425 * 119.99546 * 20 18 16 23 23 H 1.48498 * 109.47035 * 239.99785 * 20 18 16 24 24 C 1.46921 * 118.73975 * 306.38619 * 15 14 13 25 25 C 1.53048 * 109.45722 * 154.97051 * 12 11 9 26 26 H 1.09001 * 109.47408 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47419 * 300.00224 * 1 2 3 28 28 H 1.09005 * 109.46890 * 60.00326 * 1 2 3 29 29 H 1.09000 * 109.47042 * 239.99668 * 2 1 3 30 30 H 1.09003 * 109.47161 * 120.00403 * 2 1 3 31 31 H 1.09000 * 109.47266 * 150.00664 * 4 3 2 32 32 H 1.08995 * 109.47422 * 30.00403 * 4 3 2 33 33 H 1.08994 * 109.47231 * 299.99883 * 5 4 3 34 34 H 1.08994 * 109.46771 * 60.00481 * 5 4 3 35 35 H 1.08998 * 115.55260 * 29.41417 * 6 5 4 36 36 H 1.09000 * 117.50102 * 0.02562 * 7 6 5 37 37 H 1.09005 * 117.49773 * 145.02349 * 7 6 5 38 38 H 1.09006 * 117.49927 * 214.97702 * 8 6 5 39 39 H 1.08994 * 117.49754 * 359.97438 * 8 6 5 40 40 H 0.96997 * 119.99557 * 0.02562 * 11 9 3 41 41 H 1.09000 * 109.46322 * 35.00332 * 12 11 9 42 42 H 1.08995 * 109.49863 * 298.56657 * 13 12 11 43 43 H 1.09000 * 109.49360 * 58.67065 * 13 12 11 44 44 H 1.09006 * 109.60067 * 294.86905 * 14 13 12 45 45 H 1.08996 * 109.70463 * 174.50771 * 14 13 12 46 46 H 0.96998 * 120.00506 * 180.02562 * 19 18 16 47 47 H 1.09002 * 109.58333 * 293.81314 * 24 15 14 48 48 H 1.09009 * 109.70441 * 173.46578 * 24 15 14 49 49 H 1.08996 * 109.49876 * 301.33258 * 25 12 11 50 50 H 1.08995 * 109.49390 * 61.43784 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2625 2.0717 1.2687 5 6 0.9875 2.7930 1.7103 6 6 1.2427 3.5148 3.0351 7 6 0.4434 3.0544 4.2557 8 6 0.1192 4.3935 3.5887 9 6 2.2430 2.0165 -1.1672 10 8 2.6479 3.1630 -1.1672 11 7 2.0187 1.3810 -2.3345 12 6 2.2633 2.0715 -3.6031 13 6 1.0298 2.8942 -3.9820 14 6 1.3021 3.6421 -5.2909 15 7 1.7166 2.6711 -6.3127 16 6 1.0720 2.6101 -7.5194 17 1 0.0348 2.9019 -7.5929 18 6 1.7518 2.1730 -8.6479 19 7 3.0674 2.1359 -8.6506 20 14 0.7993 1.6377 -10.1631 21 1 -0.6570 1.7726 -9.9055 22 1 1.1800 2.4937 -11.3153 23 1 1.1175 0.2206 -10.4728 24 6 2.8361 1.7673 -6.0153 25 6 2.5468 1.0405 -4.6982 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.0644 2.7984 1.1384 32 1 2.5506 1.3451 2.0284 33 1 0.6995 3.5197 0.9508 34 1 0.1856 2.0664 1.8407 35 1 2.2681 3.8453 3.2004 36 1 -0.2640 2.2371 4.1152 37 1 0.9428 3.0826 5.2242 38 1 0.4055 5.3020 4.1186 39 1 -0.8016 4.4577 3.0089 40 1 1.6953 0.4666 -2.3344 41 1 3.1227 2.7335 -3.4965 42 1 0.1757 2.2299 -4.1132 43 1 0.8146 3.6124 -3.1908 44 1 2.0970 4.3719 -5.1365 45 1 0.3962 4.1524 -5.6179 46 1 3.5425 1.8308 -9.4394 47 1 3.7561 2.3441 -5.9201 48 1 2.9434 1.0385 -6.8189 49 1 3.4113 0.4393 -4.4169 50 1 1.6782 0.3940 -4.8226 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612840601.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:38:16 Heat of formation + Delta-G solvation = -7.731748 kcal Electronic energy + Delta-G solvation = -26524.381155 eV Core-core repulsion = 22973.022096 eV Total energy + Delta-G solvation = -3551.359059 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.45348 -39.33577 -38.47254 -36.93932 -36.04058 -33.96693 -32.47771 -31.74908 -31.26090 -30.13386 -26.96714 -24.95107 -24.31266 -23.88581 -23.32107 -23.15529 -21.35000 -21.18646 -20.60672 -19.20932 -18.51483 -17.57421 -16.85093 -16.81935 -16.08317 -16.00166 -15.61648 -15.39697 -15.34747 -14.95008 -14.88847 -14.73255 -14.51004 -14.27433 -14.02267 -13.82676 -13.20394 -13.13466 -13.02160 -12.83843 -12.62835 -12.52242 -12.43901 -12.29991 -12.26164 -12.18935 -11.99813 -11.87639 -11.71469 -11.55297 -11.36218 -11.23328 -11.06773 -10.76877 -10.56750 -10.11017 -9.49245 -8.71316 -7.87846 -5.33803 1.47697 1.49483 1.60505 1.67023 2.18473 2.51936 2.90436 2.97653 3.28446 3.65471 3.77635 3.88877 3.97119 4.01734 4.06143 4.09342 4.23516 4.32756 4.34213 4.39265 4.45484 4.54596 4.59727 4.64072 4.71017 4.79364 4.80826 4.83797 4.86752 4.92892 5.02478 5.04737 5.05759 5.10718 5.13508 5.15315 5.27878 5.28567 5.33126 5.45995 5.47228 5.60823 5.64210 5.66247 5.71615 5.99191 6.38947 7.02483 7.14245 7.62057 7.83314 8.36883 9.19565 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.027401 B = 0.002663 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.629390 B =10510.688072 C =10728.102249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.101 3.899 3 N -0.626 5.626 4 C 0.137 3.863 5 C -0.095 4.095 6 C -0.160 4.160 7 C -0.164 4.164 8 C -0.192 4.192 9 C 0.699 3.301 10 O -0.635 6.635 11 N -0.727 5.727 12 C 0.181 3.819 13 C -0.121 4.121 14 C 0.146 3.854 15 N -0.609 5.609 16 C -0.262 4.262 17 H 0.067 0.933 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.267 1.267 22 H -0.294 1.294 23 H -0.287 1.287 24 C 0.179 3.821 25 C -0.127 4.127 26 H 0.087 0.913 27 H 0.061 0.939 28 H 0.039 0.961 29 H 0.080 0.920 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.406 0.594 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.054 0.946 44 H 0.006 0.994 45 H 0.057 0.943 46 H 0.251 0.749 47 H -0.006 1.006 48 H 0.065 0.935 49 H 0.076 0.924 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.300 -7.368 25.700 27.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.362 5.362 4 C 0.014 3.986 5 C -0.133 4.133 6 C -0.179 4.179 7 C -0.201 4.201 8 C -0.229 4.229 9 C 0.400 3.600 10 O -0.517 6.517 11 N -0.383 5.383 12 C 0.075 3.925 13 C -0.161 4.161 14 C 0.019 3.981 15 N -0.332 5.332 16 C -0.392 4.392 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.798 3.202 21 H -0.191 1.191 22 H -0.221 1.221 23 H -0.213 1.213 24 C 0.053 3.947 25 C -0.166 4.166 26 H 0.106 0.894 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.054 0.946 34 H 0.095 0.905 35 H 0.123 0.877 36 H 0.119 0.881 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.244 0.756 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.024 0.976 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.012 0.988 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.912 -6.608 25.577 26.870 hybrid contribution -0.256 -0.048 -1.269 1.295 sum -5.168 -6.656 24.309 25.728 Atomic orbital electron populations 1.22272 0.95444 1.03314 1.01897 1.21780 0.94854 0.80812 1.04676 1.47286 1.69642 1.15211 1.04047 1.21385 0.96987 0.96829 0.83380 1.21495 0.98485 0.98568 0.94786 1.22213 0.97342 1.04016 0.94280 1.23118 1.02815 0.97532 0.96633 1.23032 0.99771 0.95540 1.04584 1.16168 0.78298 0.84097 0.81431 1.90883 1.55003 1.18843 1.86963 1.45301 1.71479 1.17704 1.03831 1.20479 0.96872 0.93655 0.81499 1.22152 0.98039 0.99068 0.96876 1.20949 0.97351 0.91012 0.88741 1.44356 1.37938 1.37581 1.13339 1.19545 0.93397 1.40427 0.85860 0.91520 1.25834 0.96050 1.02517 1.00167 1.70191 1.07015 1.51294 1.29684 0.85176 0.78605 0.77350 0.79102 1.19097 1.22132 1.21310 1.20560 0.87965 0.92280 0.93889 1.22249 1.01959 0.97539 0.94872 0.89416 0.92012 0.94218 0.90212 0.87335 0.92290 0.87474 0.94560 0.90515 0.87691 0.88112 0.87701 0.88373 0.89394 0.75603 0.92852 0.91685 0.92762 0.97646 0.92455 0.93984 0.98814 0.91697 0.90544 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 10.24 71.98 0.74 -1.36 16 2 C 0.10 1.30 5.94 86.38 0.51 1.81 16 3 N -0.63 -13.23 2.47 -839.86 -2.08 -15.30 16 4 C 0.14 2.57 5.41 86.38 0.47 3.04 16 5 C -0.09 -1.74 5.82 30.60 0.18 -1.56 16 6 C -0.16 -2.49 5.73 -10.79 -0.06 -2.55 16 7 C -0.16 -1.92 10.18 30.62 0.31 -1.61 16 8 C -0.19 -2.87 10.25 30.62 0.31 -2.55 16 9 C 0.70 21.40 8.24 179.05 1.48 22.88 16 10 O -0.64 -25.63 15.58 -3.99 -0.06 -25.69 16 11 N -0.73 -20.68 4.94 -457.67 -2.26 -22.94 16 12 C 0.18 6.47 2.42 45.02 0.11 6.58 16 13 C -0.12 -4.57 5.65 30.67 0.17 -4.39 16 14 C 0.15 6.55 6.52 86.36 0.56 7.11 16 15 N -0.61 -31.33 2.99 -699.09 -2.09 -33.43 16 16 C -0.26 -14.56 9.58 84.03 0.81 -13.76 16 17 H 0.07 3.62 7.88 -2.91 -0.02 3.59 16 18 C -0.05 -2.82 4.92 84.86 0.42 -2.40 16 19 N -0.94 -55.57 11.19 21.65 0.24 -55.33 16 20 Si 0.97 44.73 29.59 68.60 2.03 46.76 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 24 C 0.18 8.71 5.30 86.36 0.46 9.17 16 25 C -0.13 -4.61 5.55 30.67 0.17 -4.44 16 26 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.75 6.26 -2.39 -0.01 0.74 16 28 H 0.04 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.08 0.96 6.36 -2.39 -0.02 0.94 16 30 H 0.11 0.83 7.89 -2.39 -0.02 0.81 16 31 H 0.06 1.42 7.42 -2.39 -0.02 1.40 16 32 H 0.11 1.29 7.89 -2.39 -0.02 1.27 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 34 H 0.08 1.20 6.00 -2.39 -0.01 1.18 16 35 H 0.10 1.63 8.08 -2.39 -0.02 1.61 16 36 H 0.10 1.03 8.03 -2.39 -0.02 1.01 16 37 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 39 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.41 8.98 6.33 -92.71 -0.59 8.40 16 41 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 42 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.01 0.26 8.14 -2.38 -0.02 0.24 16 45 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 46 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 47 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 48 H 0.06 3.49 6.07 -2.38 -0.01 3.48 16 49 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 50 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -71.22 389.58 2.73 -68.50 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.32 Total: 21.48 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 6.63 Total: 15.96 kcal Atomic # 7 Polarization: -120.81 SS G_CDS: -6.19 Total: -127.00 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -0.06 Total: -25.69 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -71.22 2.73 -68.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612840601.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.765 kcal (2) G-P(sol) polarization free energy of solvation -71.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds