Wall clock time and date at job start Tue Mar 31 2020 09:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47091 * 2 1 4 4 C 1.53006 * 109.47068 * 120.00023 * 2 1 3 5 5 C 1.52997 * 109.47136 * 294.99860 * 4 2 1 6 6 C 1.47202 * 109.46773 * 180.02562 * 5 4 2 7 7 N 4.86671 * 101.55227 * 104.08834 * 2 1 3 8 8 C 1.53002 * 109.46953 * 240.00093 * 2 1 3 9 9 N 1.46897 * 109.47089 * 65.09743 * 8 2 1 10 10 C 1.46902 * 110.99853 * 200.27390 * 9 8 2 11 11 C 1.50701 * 109.46854 * 66.72328 * 10 9 8 12 12 H 1.08000 * 120.00021 * 5.12125 * 11 10 9 13 13 C 1.37879 * 119.99815 * 185.12459 * 11 10 9 14 14 N 1.31513 * 120.00172 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00005 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47222 * 89.99612 * 15 13 11 17 17 H 1.48498 * 109.47095 * 209.99859 * 15 13 11 18 18 H 1.48508 * 109.46789 * 329.99474 * 15 13 11 19 19 C 1.46901 * 111.00303 * 76.31887 * 9 8 2 20 20 C 1.53000 * 109.47235 * 189.99855 * 19 9 8 21 21 N 1.46901 * 109.47235 * 179.97438 * 20 19 9 22 22 C 1.47012 * 110.99765 * 293.63909 * 21 20 19 23 23 C 1.53097 * 109.25416 * 177.60879 * 22 21 20 24 24 O 1.43014 * 109.26071 * 56.84500 * 23 22 21 25 25 C 1.43012 * 113.74128 * 301.33349 * 24 23 22 26 26 C 1.47010 * 110.99673 * 170.00356 * 21 20 19 27 27 H 1.08999 * 109.47131 * 295.60068 * 1 2 3 28 28 H 1.08997 * 109.47120 * 55.60625 * 1 2 3 29 29 H 1.08997 * 109.46992 * 175.60396 * 1 2 3 30 30 H 1.08996 * 109.46983 * 55.00688 * 4 2 1 31 31 H 1.09008 * 109.46821 * 174.99675 * 4 2 1 32 32 H 1.09000 * 109.47141 * 300.00281 * 5 4 2 33 33 H 1.08999 * 109.46987 * 60.00583 * 5 4 2 34 34 H 1.09006 * 109.46714 * 185.09502 * 8 2 1 35 35 H 1.09000 * 109.47348 * 305.08896 * 8 2 1 36 36 H 1.09001 * 109.46904 * 186.71981 * 10 9 8 37 37 H 1.08997 * 109.47321 * 306.72253 * 10 9 8 38 38 H 0.96996 * 119.99836 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.47314 * 310.00194 * 19 9 8 40 40 H 1.09002 * 109.47028 * 70.00338 * 19 9 8 41 41 H 1.08999 * 109.47246 * 300.00380 * 20 19 9 42 42 H 1.09002 * 109.46718 * 60.00293 * 20 19 9 43 43 H 1.08998 * 109.50454 * 297.53787 * 22 21 20 44 44 H 1.08993 * 109.50871 * 57.67078 * 22 21 20 45 45 H 1.09005 * 109.50310 * 296.91270 * 23 22 21 46 46 H 1.08998 * 109.54437 * 176.80562 * 23 22 21 47 47 H 1.09012 * 109.50675 * 298.73125 * 25 24 23 48 48 H 1.09001 * 109.54870 * 178.62944 * 25 24 23 49 49 H 1.09001 * 109.50643 * 302.32629 * 26 21 20 50 50 H 1.09001 * 109.51051 * 62.41584 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 0.0689 2.4953 6 6 2.1265 -0.6248 3.6972 7 7 2.5046 -1.1606 4.6247 8 6 2.0400 -0.7212 -1.2493 9 7 1.6534 0.0387 -2.4455 10 6 1.6829 -0.8127 -3.6423 11 6 0.6067 -1.8625 -3.5387 12 1 -0.0878 -1.8440 -2.7118 13 6 0.5087 -2.8465 -4.4995 14 7 1.3542 -2.8687 -5.5066 15 14 -0.8257 -4.1474 -4.3714 16 1 -2.0430 -3.6794 -5.0817 17 1 -0.3469 -5.4102 -4.9890 18 1 -1.1481 -4.3868 -2.9416 19 6 2.5094 1.2199 -2.6184 20 6 1.9290 2.1142 -3.7157 21 7 2.7847 3.2957 -3.8882 22 6 2.7486 4.1513 -2.6932 23 6 3.6975 5.3362 -2.8918 24 8 3.3254 6.0451 -4.0768 25 6 3.3502 5.2421 -5.2599 26 6 2.3977 4.0562 -5.0853 27 1 -0.3633 0.4440 0.9268 28 1 -0.3633 0.5805 -0.8480 29 1 -0.3633 -1.0246 -0.0788 30 1 1.6055 -1.7198 1.2951 31 1 3.1264 -0.7995 1.2056 32 1 2.0699 1.0674 2.4494 33 1 0.5490 0.1470 2.5390 34 1 3.1262 -0.8009 -1.2048 35 1 1.6041 -1.7192 -1.2961 36 1 1.5097 -0.2009 -4.5277 37 1 2.6564 -1.2968 -3.7199 38 1 1.2855 -3.5612 -6.1823 39 1 2.5544 1.7762 -1.6821 40 1 3.5132 0.9028 -2.9013 41 1 1.8840 1.5579 -4.6520 42 1 0.9252 2.4313 -3.4329 43 1 1.7342 4.5192 -2.5395 44 1 3.0632 3.5749 -1.8233 45 1 4.7197 4.9710 -2.9920 46 1 3.6321 6.0037 -2.0326 47 1 4.3623 4.8742 -5.4290 48 1 3.0333 5.8408 -6.1138 49 1 2.4562 3.4104 -5.9614 50 1 1.3774 4.4220 -4.9702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:41 Heat of formation + Delta-G solvation = -23.649808 kcal Electronic energy + Delta-G solvation = -26269.770430 eV Core-core repulsion = 22717.721112 eV Total energy + Delta-G solvation = -3552.049318 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.57372 -38.09821 -36.92839 -35.81735 -34.66086 -32.54411 -31.25489 -30.61576 -29.28535 -27.22294 -26.29759 -25.11779 -24.09412 -23.45414 -22.14729 -20.47901 -20.08481 -19.27575 -17.53722 -16.67744 -16.40727 -16.13571 -15.62394 -15.17732 -15.09454 -15.02970 -14.65898 -14.49881 -14.13825 -14.09265 -13.69661 -13.42880 -13.13174 -12.89942 -12.64697 -12.32975 -12.30112 -12.12262 -11.88634 -11.76180 -11.53460 -11.49894 -11.42662 -11.27264 -10.93438 -10.88660 -10.68850 -10.64997 -10.55562 -10.36554 -10.21238 -10.02366 -9.69280 -9.62598 -9.19888 -8.45341 -8.28243 -7.27080 -6.05596 -4.06705 2.67791 2.70642 3.29108 3.36079 3.38353 3.71037 3.86943 3.92465 4.40074 4.78272 4.85720 4.91313 4.96959 5.00698 5.07751 5.11568 5.23905 5.29000 5.30389 5.36726 5.45356 5.51373 5.55071 5.60403 5.63337 5.72918 5.78694 5.82100 5.88978 5.92844 5.98867 6.06792 6.12342 6.31105 6.34783 6.36499 6.44862 6.51065 6.79394 6.84296 6.99918 7.07812 7.12013 7.29058 7.35983 7.48273 7.79280 8.06768 8.16252 8.52160 9.02073 9.57809 11.04953 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.006658 B = 0.004818 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4204.297086 B = 5809.612096 C = 9586.363653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.083 4.083 3 H 0.066 0.934 4 C -0.113 4.113 5 C -0.029 4.029 6 C 0.211 3.789 7 N -0.451 5.451 8 C 0.068 3.932 9 N -0.534 5.534 10 C 0.191 3.809 11 C -0.506 4.506 12 H 0.064 0.936 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.894 3.106 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.274 1.274 19 C 0.062 3.938 20 C 0.060 3.940 21 N -0.538 5.538 22 C 0.016 3.984 23 C 0.064 3.936 24 O -0.390 6.390 25 C 0.065 3.935 26 C 0.019 3.981 27 H 0.040 0.960 28 H 0.069 0.931 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.111 0.889 34 H 0.019 0.981 35 H 0.088 0.912 36 H 0.029 0.971 37 H -0.007 1.007 38 H 0.261 0.739 39 H 0.059 0.941 40 H 0.029 0.971 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.087 0.913 45 H 0.058 0.942 46 H 0.094 0.906 47 H 0.058 0.942 48 H 0.095 0.905 49 H 0.087 0.913 50 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.224 14.248 6.454 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.102 4.102 3 H 0.084 0.916 4 C -0.152 4.152 5 C -0.069 4.069 6 C -0.107 4.107 7 N -0.128 5.128 8 C -0.061 4.061 9 N -0.258 5.258 10 C 0.066 3.934 11 C -0.544 4.544 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.537 5.537 15 Si 0.722 3.278 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.198 1.198 19 C -0.067 4.067 20 C -0.067 4.067 21 N -0.264 5.264 22 C -0.112 4.112 23 C -0.013 4.013 24 O -0.308 6.308 25 C -0.012 4.012 26 C -0.110 4.110 27 H 0.059 0.941 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.037 0.963 35 H 0.106 0.894 36 H 0.047 0.953 37 H 0.011 0.989 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.047 0.953 41 H 0.102 0.898 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.106 0.894 45 H 0.076 0.924 46 H 0.112 0.888 47 H 0.077 0.923 48 H 0.113 0.887 49 H 0.105 0.895 50 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.782 13.527 7.672 15.798 hybrid contribution -0.773 -0.965 -0.502 1.334 sum 2.008 12.562 7.170 14.603 Atomic orbital electron populations 1.21747 0.94520 1.02378 1.00786 1.21128 0.96869 0.99054 0.93123 0.91615 1.21615 1.01637 0.99718 0.92231 1.19473 1.02824 0.98596 0.85979 1.29441 0.93166 0.93614 0.94435 1.81209 1.09691 1.09763 1.12113 1.22010 0.96595 0.98482 0.89011 1.61999 1.50748 1.08030 1.05033 1.19770 0.96092 0.90995 0.86523 1.21158 1.14252 1.09902 1.09116 0.91755 1.24976 0.96156 0.97924 0.95456 1.69953 1.36720 1.34538 1.12529 0.86571 0.81987 0.81037 0.78245 1.20712 1.21418 1.19843 1.21946 0.94868 0.92911 0.96938 1.22157 0.93762 0.89941 1.00823 1.62172 1.54358 1.07468 1.02402 1.22804 0.99125 0.94760 0.94508 1.22670 0.97679 0.93206 0.87785 1.87948 1.89706 1.37151 1.16030 1.22665 0.99200 0.91725 0.87651 1.22746 0.97759 0.95878 0.94586 0.94137 0.91240 0.92747 0.90849 0.91367 0.87562 0.87109 0.96251 0.89367 0.95282 0.98872 0.92969 0.92287 0.95275 0.89780 0.94092 0.94076 0.89438 0.92415 0.88779 0.92329 0.88676 0.89463 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.88 37.16 0.33 -1.37 16 2 C -0.08 -0.99 2.45 -90.61 -0.22 -1.21 16 3 H 0.07 0.72 6.69 -51.93 -0.35 0.37 16 4 C -0.11 -1.11 4.64 -26.73 -0.12 -1.23 16 5 C -0.03 -0.22 5.46 -29.52 -0.16 -0.38 16 6 C 0.21 2.27 15.43 -20.76 -0.32 1.95 16 7 N -0.45 -6.29 18.54 42.15 0.78 -5.51 16 8 C 0.07 1.12 4.22 -3.82 -0.02 1.10 16 9 N -0.53 -9.93 3.96 -236.07 -0.93 -10.87 16 10 C 0.19 4.56 4.59 -4.97 -0.02 4.54 16 11 C -0.51 -13.16 8.13 -34.44 -0.28 -13.44 16 12 H 0.06 1.65 7.56 -52.49 -0.40 1.25 16 13 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 14 N -0.90 -25.70 13.29 55.43 0.74 -24.96 16 15 Si 0.89 20.84 29.54 -169.99 -5.02 15.82 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 C 0.06 1.00 4.72 -3.82 -0.02 0.98 16 20 C 0.06 0.94 4.90 -3.82 -0.02 0.93 16 21 N -0.54 -7.25 4.73 -234.31 -1.11 -8.35 16 22 C 0.02 0.19 5.44 -3.71 -0.02 0.17 16 23 C 0.06 0.65 7.01 37.21 0.26 0.92 16 24 O -0.39 -4.70 10.83 -35.23 -0.38 -5.08 16 25 C 0.06 0.69 7.01 37.21 0.26 0.95 16 26 C 0.02 0.23 5.64 -3.71 -0.02 0.21 16 27 H 0.04 0.38 6.37 -51.93 -0.33 0.05 16 28 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.11 0.69 6.47 -51.93 -0.34 0.35 16 34 H 0.02 0.32 7.99 -51.93 -0.41 -0.10 16 35 H 0.09 1.69 6.72 -51.93 -0.35 1.34 16 36 H 0.03 0.74 6.06 -51.93 -0.31 0.43 16 37 H -0.01 -0.18 8.11 -51.93 -0.42 -0.60 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.06 0.81 4.98 -51.93 -0.26 0.55 16 40 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 41 H 0.08 1.51 6.25 -51.93 -0.32 1.19 16 42 H 0.04 0.66 8.12 -51.93 -0.42 0.24 16 43 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.09 0.92 6.38 -51.93 -0.33 0.59 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 48 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 50 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 391.70 15.07 5.90 5.90 Total: -1.00 -30.34 391.70 -9.35 -39.70 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.86 Total: -2.17 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: -0.47 Total: -4.47 kcal Atomic # 7 Polarization: -49.17 SS G_CDS: -0.52 Total: -49.69 kcal Atomic # 8 Polarization: -4.70 SS G_CDS: -0.38 Total: -5.08 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.34 -9.35 -39.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.048 kcal (2) G-P(sol) polarization free energy of solvation -30.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds