Wall clock time and date at job start Tue Mar 31 2020 09:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47091 * 2 1 4 4 C 1.53006 * 109.47068 * 120.00023 * 2 1 3 5 5 C 1.52997 * 109.47136 * 294.99860 * 4 2 1 6 6 C 1.47202 * 109.46773 * 180.02562 * 5 4 2 7 7 N 4.86671 * 101.55227 * 104.08834 * 2 1 3 8 8 C 1.53002 * 109.46953 * 240.00093 * 2 1 3 9 9 N 1.46897 * 109.47089 * 65.09743 * 8 2 1 10 10 C 1.46902 * 110.99853 * 200.27390 * 9 8 2 11 11 C 1.50701 * 109.46854 * 66.72328 * 10 9 8 12 12 H 1.08000 * 120.00021 * 5.12125 * 11 10 9 13 13 C 1.37879 * 119.99815 * 185.12459 * 11 10 9 14 14 N 1.31513 * 120.00172 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00005 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47222 * 89.99612 * 15 13 11 17 17 H 1.48498 * 109.47095 * 209.99859 * 15 13 11 18 18 H 1.48508 * 109.46789 * 329.99474 * 15 13 11 19 19 C 1.46901 * 111.00303 * 76.31887 * 9 8 2 20 20 C 1.53000 * 109.47235 * 189.99855 * 19 9 8 21 21 N 1.46901 * 109.47235 * 179.97438 * 20 19 9 22 22 C 1.47012 * 110.99765 * 293.63909 * 21 20 19 23 23 C 1.53097 * 109.25416 * 177.60879 * 22 21 20 24 24 O 1.43014 * 109.26071 * 56.84500 * 23 22 21 25 25 C 1.43012 * 113.74128 * 301.33349 * 24 23 22 26 26 C 1.47010 * 110.99673 * 170.00356 * 21 20 19 27 27 H 1.08999 * 109.47131 * 295.60068 * 1 2 3 28 28 H 1.08997 * 109.47120 * 55.60625 * 1 2 3 29 29 H 1.08997 * 109.46992 * 175.60396 * 1 2 3 30 30 H 1.08996 * 109.46983 * 55.00688 * 4 2 1 31 31 H 1.09008 * 109.46821 * 174.99675 * 4 2 1 32 32 H 1.09000 * 109.47141 * 300.00281 * 5 4 2 33 33 H 1.08999 * 109.46987 * 60.00583 * 5 4 2 34 34 H 1.09006 * 109.46714 * 185.09502 * 8 2 1 35 35 H 1.09000 * 109.47348 * 305.08896 * 8 2 1 36 36 H 1.09001 * 109.46904 * 186.71981 * 10 9 8 37 37 H 1.08997 * 109.47321 * 306.72253 * 10 9 8 38 38 H 0.96996 * 119.99836 * 179.97438 * 14 13 11 39 39 H 1.08999 * 109.47314 * 310.00194 * 19 9 8 40 40 H 1.09002 * 109.47028 * 70.00338 * 19 9 8 41 41 H 1.08999 * 109.47246 * 300.00380 * 20 19 9 42 42 H 1.09002 * 109.46718 * 60.00293 * 20 19 9 43 43 H 1.08998 * 109.50454 * 297.53787 * 22 21 20 44 44 H 1.08993 * 109.50871 * 57.67078 * 22 21 20 45 45 H 1.09005 * 109.50310 * 296.91270 * 23 22 21 46 46 H 1.08998 * 109.54437 * 176.80562 * 23 22 21 47 47 H 1.09012 * 109.50675 * 298.73125 * 25 24 23 48 48 H 1.09001 * 109.54870 * 178.62944 * 25 24 23 49 49 H 1.09001 * 109.50643 * 302.32629 * 26 21 20 50 50 H 1.09001 * 109.51051 * 62.41584 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6353 0.0689 2.4953 6 6 2.1265 -0.6248 3.6972 7 7 2.5046 -1.1606 4.6247 8 6 2.0400 -0.7212 -1.2493 9 7 1.6534 0.0387 -2.4455 10 6 1.6829 -0.8127 -3.6423 11 6 0.6067 -1.8625 -3.5387 12 1 -0.0878 -1.8440 -2.7118 13 6 0.5087 -2.8465 -4.4995 14 7 1.3542 -2.8687 -5.5066 15 14 -0.8257 -4.1474 -4.3714 16 1 -2.0430 -3.6794 -5.0817 17 1 -0.3469 -5.4102 -4.9890 18 1 -1.1481 -4.3868 -2.9416 19 6 2.5094 1.2199 -2.6184 20 6 1.9290 2.1142 -3.7157 21 7 2.7847 3.2957 -3.8882 22 6 2.7486 4.1513 -2.6932 23 6 3.6975 5.3362 -2.8918 24 8 3.3254 6.0451 -4.0768 25 6 3.3502 5.2421 -5.2599 26 6 2.3977 4.0562 -5.0853 27 1 -0.3633 0.4440 0.9268 28 1 -0.3633 0.5805 -0.8480 29 1 -0.3633 -1.0246 -0.0788 30 1 1.6055 -1.7198 1.2951 31 1 3.1264 -0.7995 1.2056 32 1 2.0699 1.0674 2.4494 33 1 0.5490 0.1470 2.5390 34 1 3.1262 -0.8009 -1.2048 35 1 1.6041 -1.7192 -1.2961 36 1 1.5097 -0.2009 -4.5277 37 1 2.6564 -1.2968 -3.7199 38 1 1.2855 -3.5612 -6.1823 39 1 2.5544 1.7762 -1.6821 40 1 3.5132 0.9028 -2.9013 41 1 1.8840 1.5579 -4.6520 42 1 0.9252 2.4313 -3.4329 43 1 1.7342 4.5192 -2.5395 44 1 3.0632 3.5749 -1.8233 45 1 4.7197 4.9710 -2.9920 46 1 3.6321 6.0037 -2.0326 47 1 4.3623 4.8742 -5.4290 48 1 3.0333 5.8408 -6.1138 49 1 2.4562 3.4104 -5.9614 50 1 1.3774 4.4220 -4.9702 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887044.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:23:40 Heat of formation + Delta-G solvation = -43.899276 kcal Electronic energy + Delta-G solvation = -26270.648513 eV Core-core repulsion = 22717.721112 eV Total energy + Delta-G solvation = -3552.927401 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.55394 -39.30023 -37.94452 -36.82984 -35.89817 -34.48488 -32.15029 -31.57360 -30.62003 -28.87641 -27.37561 -26.25793 -25.16999 -24.80296 -23.51256 -21.64768 -21.20953 -20.47698 -18.53378 -18.32942 -17.53787 -17.07303 -16.84627 -16.36746 -16.25166 -15.94828 -15.85952 -15.80518 -15.40240 -15.19851 -14.71114 -14.60211 -14.39517 -14.10129 -14.04568 -13.60998 -13.47874 -13.23052 -13.15645 -12.87181 -12.76382 -12.73814 -12.58026 -12.43791 -12.35650 -12.27157 -12.04356 -11.89922 -11.66344 -11.52664 -11.40645 -11.23172 -11.18887 -10.95735 -10.60816 -10.52889 -9.35973 -8.89005 -8.14979 -6.22970 1.42980 1.43250 1.53750 1.84385 1.89951 2.42589 2.69466 3.00099 3.14624 3.18461 3.54827 3.90258 3.99927 4.07402 4.08868 4.13282 4.23042 4.29624 4.39259 4.45315 4.46372 4.48649 4.59517 4.68513 4.70892 4.78140 4.84111 4.86653 4.88154 4.94091 4.95405 5.01771 5.07530 5.11083 5.14119 5.25483 5.28715 5.34633 5.40573 5.45454 5.67572 5.73865 5.83532 5.96870 6.04375 6.16132 6.21804 6.44945 6.69087 6.75450 6.95676 7.46421 8.95716 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.006658 B = 0.004818 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4204.297086 B = 5809.612096 C = 9586.363653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.068 4.068 3 H 0.089 0.911 4 C -0.108 4.108 5 C -0.019 4.019 6 C 0.238 3.762 7 N -0.513 5.513 8 C 0.065 3.935 9 N -0.531 5.531 10 C 0.208 3.792 11 C -0.510 4.510 12 H 0.066 0.934 13 C 0.002 3.998 14 N -0.936 5.936 15 Si 0.959 3.041 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.262 1.262 19 C 0.069 3.931 20 C 0.073 3.927 21 N -0.546 5.546 22 C 0.016 3.984 23 C 0.063 3.937 24 O -0.403 6.403 25 C 0.069 3.931 26 C 0.017 3.983 27 H 0.080 0.920 28 H 0.045 0.955 29 H 0.033 0.967 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.141 0.859 33 H 0.134 0.866 34 H 0.017 0.983 35 H 0.055 0.945 36 H 0.007 0.993 37 H -0.045 1.045 38 H 0.261 0.739 39 H 0.094 0.906 40 H 0.012 0.988 41 H 0.049 0.951 42 H 0.037 0.963 43 H 0.039 0.961 44 H 0.100 0.900 45 H 0.059 0.941 46 H 0.120 0.880 47 H 0.060 0.940 48 H 0.115 0.885 49 H 0.080 0.920 50 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.555 16.167 8.364 18.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.087 4.087 3 H 0.107 0.893 4 C -0.147 4.147 5 C -0.059 4.059 6 C -0.078 4.078 7 N -0.191 5.191 8 C -0.063 4.063 9 N -0.255 5.255 10 C 0.081 3.919 11 C -0.549 4.549 12 H 0.085 0.915 13 C -0.195 4.195 14 N -0.578 5.578 15 Si 0.784 3.216 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.187 1.187 19 C -0.059 4.059 20 C -0.055 4.055 21 N -0.272 5.272 22 C -0.112 4.112 23 C -0.013 4.013 24 O -0.322 6.322 25 C -0.008 4.008 26 C -0.112 4.112 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.159 0.841 33 H 0.152 0.848 34 H 0.035 0.965 35 H 0.074 0.926 36 H 0.025 0.975 37 H -0.027 1.027 38 H 0.070 0.930 39 H 0.112 0.888 40 H 0.031 0.969 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.118 0.882 45 H 0.078 0.922 46 H 0.138 0.862 47 H 0.078 0.922 48 H 0.133 0.867 49 H 0.099 0.901 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.110 15.466 9.606 18.328 hybrid contribution -0.528 -1.513 -1.134 1.963 sum 1.581 13.953 8.472 16.400 Atomic orbital electron populations 1.21730 0.94520 1.01076 1.01917 1.21000 0.96665 0.99711 0.91344 0.89264 1.21495 1.01591 0.99324 0.92300 1.19644 1.04273 0.99090 0.82876 1.29975 0.91498 0.92217 0.94151 1.81244 1.11881 1.11730 1.14273 1.22091 0.96421 0.97569 0.90234 1.61966 1.51813 1.07982 1.03704 1.19390 0.93504 0.90752 0.88243 1.21473 1.14375 1.10240 1.08770 0.91538 1.25823 0.98343 1.00226 0.95153 1.70090 1.38673 1.35513 1.13476 0.85537 0.79184 0.78154 0.78699 1.20104 1.21426 1.18659 1.21969 0.93297 0.91973 0.98704 1.21888 0.94036 0.90659 0.98918 1.62167 1.53603 1.07539 1.03910 1.22907 0.99516 0.94988 0.93765 1.22821 0.97269 0.93135 0.88109 1.87935 1.89774 1.37795 1.16707 1.22715 0.98783 0.91203 0.88122 1.22801 0.98134 0.96283 0.93938 0.90084 0.93539 0.94769 0.92061 0.91299 0.84107 0.84835 0.96483 0.92592 0.97520 1.02700 0.93028 0.88788 0.96945 0.93202 0.94489 0.94243 0.88201 0.92222 0.86202 0.92198 0.86676 0.90111 0.94428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.88 71.98 0.64 -2.36 16 2 C -0.07 -1.45 2.45 -10.79 -0.03 -1.48 16 3 H 0.09 1.54 6.69 -2.39 -0.02 1.52 16 4 C -0.11 -1.81 4.64 30.60 0.14 -1.67 16 5 C -0.02 -0.20 5.46 28.79 0.16 -0.05 16 6 C 0.24 4.50 15.43 89.44 1.38 5.88 16 7 N -0.51 -13.69 18.54 20.01 0.37 -13.32 16 8 C 0.07 2.15 4.22 86.30 0.36 2.51 16 9 N -0.53 -20.10 3.96 -900.78 -3.56 -23.66 16 10 C 0.21 10.43 4.59 85.56 0.39 10.82 16 11 C -0.51 -27.42 8.13 25.60 0.21 -27.21 16 12 H 0.07 3.47 7.56 -2.91 -0.02 3.45 16 13 C 0.00 0.12 5.46 84.66 0.46 0.58 16 14 N -0.94 -55.56 13.29 21.45 0.28 -55.28 16 15 Si 0.96 43.36 29.54 68.60 2.03 45.39 16 16 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 17 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 C 0.07 2.18 4.72 86.30 0.41 2.59 16 20 C 0.07 2.31 4.90 86.30 0.42 2.74 16 21 N -0.55 -14.37 4.73 -895.23 -4.23 -18.60 16 22 C 0.02 0.33 5.44 86.31 0.47 0.80 16 23 C 0.06 1.13 7.01 72.01 0.50 1.63 16 24 O -0.40 -8.85 10.83 -148.98 -1.61 -10.46 16 25 C 0.07 1.37 7.01 72.02 0.50 1.88 16 26 C 0.02 0.40 5.64 86.32 0.49 0.89 16 27 H 0.08 1.14 6.37 -2.39 -0.02 1.12 16 28 H 0.05 1.26 7.88 -2.39 -0.02 1.24 16 29 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.14 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.13 0.92 6.47 -2.39 -0.02 0.91 16 34 H 0.02 0.56 7.99 -2.38 -0.02 0.54 16 35 H 0.06 2.20 6.72 -2.39 -0.02 2.19 16 36 H 0.01 0.37 6.06 -2.39 -0.01 0.36 16 37 H -0.04 -2.55 8.11 -2.39 -0.02 -2.57 16 38 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 39 H 0.09 2.32 4.98 -2.39 -0.01 2.31 16 40 H 0.01 0.44 8.12 -2.39 -0.02 0.42 16 41 H 0.05 1.91 6.25 -2.39 -0.01 1.90 16 42 H 0.04 1.19 8.12 -2.39 -0.02 1.17 16 43 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.10 1.76 6.38 -2.39 -0.02 1.75 16 45 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 48 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.08 2.00 8.09 -2.39 -0.02 1.98 16 50 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -70.06 391.70 0.69 -69.37 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: 0.90 Total: 9.02 kcal Atomic # 6 Polarization: -8.96 SS G_CDS: 6.52 Total: -2.45 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -7.14 Total: -110.86 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.61 Total: -10.46 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -70.06 0.69 -69.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887044.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.472 kcal (2) G-P(sol) polarization free energy of solvation -70.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds