Wall clock time and date at job start Tue Mar 31 2020 09:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53004 * 109.46757 * 239.99813 * 2 1 3 5 5 C 1.50700 * 109.47230 * 65.00150 * 4 2 1 6 6 H 1.08001 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99959 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99467 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00049 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46666 * 90.00028 * 9 7 5 11 11 H 1.48500 * 109.47049 * 209.99826 * 9 7 5 12 12 H 1.48498 * 109.47122 * 330.00423 * 9 7 5 13 13 C 1.53000 * 109.47009 * 119.99989 * 2 1 3 14 14 N 1.46895 * 109.47098 * 296.88225 * 13 2 1 15 15 C 1.46848 * 110.99950 * 294.09550 * 14 13 2 16 16 C 1.53038 * 109.51321 * 174.15758 * 15 14 13 17 17 C 1.53123 * 109.27863 * 59.18668 * 16 15 14 18 18 N 1.46497 * 109.51994 * 182.43907 * 17 16 15 19 19 C 1.46378 * 119.33069 * 239.72563 * 18 17 16 20 20 C 1.53504 * 109.01708 * 150.82965 * 19 18 17 21 21 C 1.53240 * 108.43002 * 55.78419 * 20 19 18 22 22 N 1.46379 * 109.15707 * 304.38698 * 21 20 19 23 23 C 1.34134 * 121.33943 * 29.06120 * 22 21 20 24 24 O 1.21587 * 118.69680 * 179.45491 * 23 22 21 25 25 C 1.53118 * 109.15759 * 302.34255 * 17 16 15 26 26 C 1.46853 * 110.99275 * 169.89681 * 14 13 2 27 27 H 1.09001 * 109.46508 * 304.85832 * 1 2 3 28 28 H 1.08994 * 109.46962 * 64.85818 * 1 2 3 29 29 H 1.08997 * 109.47032 * 184.86579 * 1 2 3 30 30 H 1.08996 * 109.46820 * 185.00140 * 4 2 1 31 31 H 1.09000 * 109.46905 * 305.00057 * 4 2 1 32 32 H 0.97005 * 120.00076 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47231 * 176.87763 * 13 2 1 34 34 H 1.09003 * 109.47425 * 56.88138 * 13 2 1 35 35 H 1.09000 * 109.46242 * 54.14642 * 15 14 13 36 36 H 1.08998 * 109.46306 * 294.16798 * 15 14 13 37 37 H 1.09004 * 109.50198 * 179.12802 * 16 15 14 38 38 H 1.08997 * 109.50513 * 299.24245 * 16 15 14 39 39 H 1.08998 * 109.52087 * 62.25458 * 17 16 15 40 40 H 1.08997 * 109.52672 * 270.86728 * 19 18 17 41 41 H 1.09006 * 109.52525 * 31.05960 * 19 18 17 42 42 H 1.09003 * 109.79763 * 296.03990 * 20 19 18 43 43 H 1.08995 * 109.73148 * 175.49842 * 20 19 18 44 44 H 1.08998 * 109.51976 * 184.47948 * 21 20 19 45 45 H 1.09006 * 109.57193 * 64.32730 * 21 20 19 46 46 H 0.96993 * 119.33020 * 209.03535 * 22 21 20 47 47 H 1.08998 * 109.49874 * 177.59508 * 25 17 16 48 48 H 1.09000 * 109.50590 * 297.67172 * 25 17 16 49 49 H 1.09001 * 109.47342 * 65.82870 * 26 14 13 50 50 H 1.09000 * 109.45202 * 305.85496 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0569 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9931 -0.4019 -3.7283 8 7 1.6456 0.2776 -4.7993 9 14 2.9646 -1.9878 -3.9027 10 1 2.0262 -3.1328 -4.0194 11 1 3.8132 -1.9172 -5.1193 12 1 3.8267 -2.1742 -2.7080 13 6 2.0400 -0.7213 1.2492 14 7 1.6128 0.0134 2.4474 15 6 2.2568 1.3314 2.5141 16 6 1.6808 2.1228 3.6905 17 6 1.9251 1.3485 4.9887 18 7 1.3247 2.0733 6.1114 19 6 2.1768 2.5192 7.2149 20 6 1.5709 3.7864 7.8341 21 6 0.1300 3.4786 8.2553 22 7 -0.6118 2.9759 7.0979 23 6 0.0043 2.3099 6.1100 24 8 -0.6604 1.9049 5.1758 25 6 1.2861 -0.0383 4.8745 26 6 1.8735 -0.7670 3.6638 27 1 -0.3632 0.5874 0.8433 28 1 -0.3633 0.4366 -0.9303 29 1 -0.3633 -1.0239 0.0872 30 1 3.1262 -0.7996 -1.2056 31 1 1.6053 -1.7198 -1.2951 32 1 1.8928 -0.0453 -5.6800 33 1 3.1286 -0.7700 1.2217 34 1 1.6317 -1.7315 1.2777 35 1 2.0719 1.8733 1.5866 36 1 3.3304 1.2045 2.6527 37 1 2.1699 3.0952 3.7492 38 1 0.6095 2.2619 3.5459 39 1 2.9974 1.2432 5.1537 40 1 2.2369 1.7345 7.9689 41 1 3.1753 2.7406 6.8377 42 1 1.5735 4.5931 7.1010 43 1 2.1520 4.0835 8.7070 44 1 -0.3436 4.3881 8.6247 45 1 0.1329 2.7240 9.0420 46 1 -1.5684 3.1273 7.0444 47 1 1.4932 -0.6100 5.7791 48 1 0.2084 0.0668 4.7492 49 1 2.9490 -0.8840 3.7970 50 1 1.4102 -1.7493 3.5712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000618887778.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:07 Heat of formation + Delta-G solvation = -30.255351 kcal Electronic energy + Delta-G solvation = -26856.574659 eV Core-core repulsion = 23304.238903 eV Total energy + Delta-G solvation = -3552.335756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.08609 -38.75553 -36.63365 -36.08572 -34.43461 -32.36397 -31.49573 -30.73688 -30.47862 -27.41295 -26.35042 -25.45161 -24.04350 -23.18572 -22.75693 -21.62029 -19.94777 -19.12760 -18.72101 -17.73767 -17.02858 -16.70123 -16.06962 -15.80658 -15.00892 -14.82986 -14.42546 -14.36638 -14.30275 -14.08281 -14.03624 -13.60917 -13.33889 -13.21536 -12.81557 -12.34981 -12.23607 -12.06118 -11.86501 -11.85192 -11.62467 -11.48786 -11.22887 -10.93661 -10.85094 -10.73583 -10.55881 -10.45580 -10.30667 -9.76576 -9.65083 -9.55371 -9.28903 -9.26891 -8.96051 -8.72034 -8.44470 -7.88668 -5.94871 -3.91016 2.49446 3.05887 3.36698 3.43514 3.47608 3.50334 4.20330 4.21449 4.33073 4.53252 4.57699 4.72527 4.87478 4.92136 5.04540 5.08313 5.09367 5.20901 5.34094 5.39010 5.46601 5.48356 5.57128 5.62896 5.69723 5.73933 5.88010 5.90090 5.96479 6.12244 6.18476 6.24279 6.43396 6.47376 6.49037 6.56219 6.67890 6.76516 6.88671 6.97257 7.19926 7.29988 7.40024 7.46107 7.52158 7.62403 7.68765 7.91313 8.49601 8.66053 9.11801 9.68356 11.18716 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.032537 B = 0.002656 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.365414 B =10538.372534 C =10752.580570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.072 4.072 3 H 0.061 0.939 4 C -0.010 4.010 5 C -0.509 4.509 6 H 0.074 0.926 7 C 0.064 3.936 8 N -0.906 5.906 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.267 1.267 13 C 0.059 3.941 14 N -0.529 5.529 15 C 0.059 3.941 16 C -0.132 4.132 17 C 0.169 3.831 18 N -0.622 5.622 19 C 0.112 3.888 20 C -0.153 4.153 21 C 0.111 3.889 22 N -0.743 5.743 23 C 0.707 3.293 24 O -0.577 6.577 25 C -0.132 4.132 26 C 0.062 3.938 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.037 0.963 30 H 0.011 0.989 31 H 0.011 0.989 32 H 0.261 0.739 33 H 0.025 0.975 34 H 0.068 0.932 35 H 0.086 0.914 36 H 0.025 0.975 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.094 0.906 44 H 0.080 0.920 45 H 0.062 0.938 46 H 0.413 0.587 47 H 0.056 0.944 48 H 0.100 0.900 49 H 0.024 0.976 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.886 5.605 31.536 32.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.091 4.091 3 H 0.079 0.921 4 C -0.048 4.048 5 C -0.547 4.547 6 H 0.092 0.908 7 C -0.137 4.137 8 N -0.546 5.546 9 Si 0.706 3.294 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.191 1.191 13 C -0.068 4.068 14 N -0.253 5.253 15 C -0.069 4.069 16 C -0.170 4.170 17 C 0.066 3.934 18 N -0.359 5.359 19 C -0.012 4.012 20 C -0.191 4.191 21 C -0.014 4.014 22 N -0.402 5.402 23 C 0.408 3.592 24 O -0.454 6.454 25 C -0.170 4.170 26 C -0.067 4.067 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.043 0.957 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.112 0.888 44 H 0.099 0.901 45 H 0.080 0.920 46 H 0.250 0.750 47 H 0.075 0.925 48 H 0.119 0.881 49 H 0.042 0.958 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.257 5.429 30.837 31.336 hybrid contribution 1.241 -0.835 0.026 1.496 sum 2.498 4.594 30.863 31.303 Atomic orbital electron populations 1.21582 0.95198 1.00365 1.00954 1.21030 0.96435 0.99034 0.92568 0.92079 1.19620 0.95602 0.95922 0.93618 1.21150 1.34972 1.09522 0.89082 0.90804 1.25030 0.95750 0.96916 0.95976 1.69921 1.47413 1.39329 0.97951 0.86803 0.80649 0.84467 0.77487 1.20399 1.21587 1.19149 1.22327 0.96996 0.97554 0.89921 1.61898 1.58784 1.02926 1.01741 1.22054 0.94904 0.90821 0.99135 1.22053 1.04903 0.97238 0.92853 1.21014 0.95800 0.91585 0.84983 1.47016 1.05652 1.60275 1.22942 1.21617 0.94703 0.95569 0.89266 1.22241 0.96262 0.98269 1.02374 1.21474 0.92252 0.99382 0.88329 1.45046 1.11931 1.60971 1.22251 1.15499 0.81955 0.79037 0.82699 1.90971 1.63246 1.56179 1.35029 1.22048 1.04315 0.94035 0.96652 1.21980 0.97537 0.97114 0.90046 0.93535 0.92257 0.94432 0.97061 0.97102 0.92919 0.95626 0.91366 0.89582 0.95695 0.92388 0.88220 0.90331 0.91924 0.90101 0.90356 0.88759 0.90119 0.91999 0.74987 0.92549 0.88118 0.95758 0.90801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 8.89 37.16 0.33 -2.25 16 2 C -0.07 -1.50 2.24 -90.62 -0.20 -1.70 16 3 H 0.06 1.31 6.30 -51.93 -0.33 0.98 16 4 C -0.01 -0.24 3.52 -27.88 -0.10 -0.34 16 5 C -0.51 -14.81 8.89 -34.44 -0.31 -15.11 16 6 H 0.07 2.31 7.32 -52.49 -0.38 1.92 16 7 C 0.06 1.90 5.47 -17.82 -0.10 1.80 16 8 N -0.91 -28.61 13.96 55.43 0.77 -27.84 16 9 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 12 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 13 C 0.06 1.04 4.37 -3.83 -0.02 1.02 16 14 N -0.53 -8.35 4.12 -234.67 -0.97 -9.32 16 15 C 0.06 0.87 5.30 -3.83 -0.02 0.85 16 16 C -0.13 -1.76 5.32 -26.65 -0.14 -1.90 16 17 C 0.17 1.91 2.59 -67.81 -0.18 1.74 16 18 N -0.62 -6.20 2.78 -171.85 -0.48 -6.68 16 19 C 0.11 0.68 6.48 -3.85 -0.02 0.65 16 20 C -0.15 -0.65 6.22 -26.35 -0.16 -0.82 16 21 C 0.11 0.51 7.20 -3.98 -0.03 0.48 16 22 N -0.74 -6.15 5.58 -65.53 -0.37 -6.51 16 23 C 0.71 8.44 7.61 -88.06 -0.67 7.77 16 24 O -0.58 -9.34 12.90 5.29 0.07 -9.27 16 25 C -0.13 -1.65 5.31 -26.65 -0.14 -1.79 16 26 C 0.06 0.82 5.46 -3.83 -0.02 0.80 16 27 H 0.05 0.92 7.84 -51.93 -0.41 0.51 16 28 H 0.06 1.36 6.82 -51.93 -0.35 1.00 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 31 H 0.01 0.26 7.57 -51.93 -0.39 -0.13 16 32 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 33 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.07 1.18 7.98 -51.93 -0.41 0.76 16 35 H 0.09 1.40 6.16 -51.93 -0.32 1.08 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.10 1.65 6.02 -51.93 -0.31 1.34 16 39 H 0.08 0.76 7.77 -51.93 -0.40 0.36 16 40 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.41 7.91 -51.93 -0.41 0.00 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 44 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 46 H 0.41 3.08 8.88 -40.82 -0.36 2.71 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.10 1.58 5.96 -51.93 -0.31 1.27 16 49 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.07 0.97 8.01 -51.93 -0.42 0.55 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -34.37 372.01 -10.82 -45.19 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -9.01 Total: -0.07 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.78 Total: -8.79 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: -1.04 Total: -50.35 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.07 Total: -9.27 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.37 -10.82 -45.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887778.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.934 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds