Wall clock time and date at job start Tue Mar 31 2020 09:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47104 * 2 1 4 4 C 1.53004 * 109.46757 * 239.99813 * 2 1 3 5 5 C 1.50700 * 109.47230 * 65.00150 * 4 2 1 6 6 H 1.08001 * 119.99649 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99959 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99467 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00049 * 359.97438 * 7 5 4 10 10 H 1.48502 * 109.46666 * 90.00028 * 9 7 5 11 11 H 1.48500 * 109.47049 * 209.99826 * 9 7 5 12 12 H 1.48498 * 109.47122 * 330.00423 * 9 7 5 13 13 C 1.53000 * 109.47009 * 119.99989 * 2 1 3 14 14 N 1.46895 * 109.47098 * 296.88225 * 13 2 1 15 15 C 1.46848 * 110.99950 * 294.09550 * 14 13 2 16 16 C 1.53038 * 109.51321 * 174.15758 * 15 14 13 17 17 C 1.53123 * 109.27863 * 59.18668 * 16 15 14 18 18 N 1.46497 * 109.51994 * 182.43907 * 17 16 15 19 19 C 1.46378 * 119.33069 * 239.72563 * 18 17 16 20 20 C 1.53504 * 109.01708 * 150.82965 * 19 18 17 21 21 C 1.53240 * 108.43002 * 55.78419 * 20 19 18 22 22 N 1.46379 * 109.15707 * 304.38698 * 21 20 19 23 23 C 1.34134 * 121.33943 * 29.06120 * 22 21 20 24 24 O 1.21587 * 118.69680 * 179.45491 * 23 22 21 25 25 C 1.53118 * 109.15759 * 302.34255 * 17 16 15 26 26 C 1.46853 * 110.99275 * 169.89681 * 14 13 2 27 27 H 1.09001 * 109.46508 * 304.85832 * 1 2 3 28 28 H 1.08994 * 109.46962 * 64.85818 * 1 2 3 29 29 H 1.08997 * 109.47032 * 184.86579 * 1 2 3 30 30 H 1.08996 * 109.46820 * 185.00140 * 4 2 1 31 31 H 1.09000 * 109.46905 * 305.00057 * 4 2 1 32 32 H 0.97005 * 120.00076 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47231 * 176.87763 * 13 2 1 34 34 H 1.09003 * 109.47425 * 56.88138 * 13 2 1 35 35 H 1.09000 * 109.46242 * 54.14642 * 15 14 13 36 36 H 1.08998 * 109.46306 * 294.16798 * 15 14 13 37 37 H 1.09004 * 109.50198 * 179.12802 * 16 15 14 38 38 H 1.08997 * 109.50513 * 299.24245 * 16 15 14 39 39 H 1.08998 * 109.52087 * 62.25458 * 17 16 15 40 40 H 1.08997 * 109.52672 * 270.86728 * 19 18 17 41 41 H 1.09006 * 109.52525 * 31.05960 * 19 18 17 42 42 H 1.09003 * 109.79763 * 296.03990 * 20 19 18 43 43 H 1.08995 * 109.73148 * 175.49842 * 20 19 18 44 44 H 1.08998 * 109.51976 * 184.47948 * 21 20 19 45 45 H 1.09006 * 109.57193 * 64.32730 * 21 20 19 46 46 H 0.96993 * 119.33020 * 209.03535 * 22 21 20 47 47 H 1.08998 * 109.49874 * 177.59508 * 25 17 16 48 48 H 1.09000 * 109.50590 * 297.67172 * 25 17 16 49 49 H 1.09001 * 109.47342 * 65.82870 * 26 14 13 50 50 H 1.09000 * 109.45202 * 305.85496 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.6413 0.0569 -2.4766 6 1 1.0807 0.9745 -2.3757 7 6 1.9931 -0.4019 -3.7283 8 7 1.6456 0.2776 -4.7993 9 14 2.9646 -1.9878 -3.9027 10 1 2.0262 -3.1328 -4.0194 11 1 3.8132 -1.9172 -5.1193 12 1 3.8267 -2.1742 -2.7080 13 6 2.0400 -0.7213 1.2492 14 7 1.6128 0.0134 2.4474 15 6 2.2568 1.3314 2.5141 16 6 1.6808 2.1228 3.6905 17 6 1.9251 1.3485 4.9887 18 7 1.3247 2.0733 6.1114 19 6 2.1768 2.5192 7.2149 20 6 1.5709 3.7864 7.8341 21 6 0.1300 3.4786 8.2553 22 7 -0.6118 2.9759 7.0979 23 6 0.0043 2.3099 6.1100 24 8 -0.6604 1.9049 5.1758 25 6 1.2861 -0.0383 4.8745 26 6 1.8735 -0.7670 3.6638 27 1 -0.3632 0.5874 0.8433 28 1 -0.3633 0.4366 -0.9303 29 1 -0.3633 -1.0239 0.0872 30 1 3.1262 -0.7996 -1.2056 31 1 1.6053 -1.7198 -1.2951 32 1 1.8928 -0.0453 -5.6800 33 1 3.1286 -0.7700 1.2217 34 1 1.6317 -1.7315 1.2777 35 1 2.0719 1.8733 1.5866 36 1 3.3304 1.2045 2.6527 37 1 2.1699 3.0952 3.7492 38 1 0.6095 2.2619 3.5459 39 1 2.9974 1.2432 5.1537 40 1 2.2369 1.7345 7.9689 41 1 3.1753 2.7406 6.8377 42 1 1.5735 4.5931 7.1010 43 1 2.1520 4.0835 8.7070 44 1 -0.3436 4.3881 8.6247 45 1 0.1329 2.7240 9.0420 46 1 -1.5684 3.1273 7.0444 47 1 1.4932 -0.6100 5.7791 48 1 0.2084 0.0668 4.7492 49 1 2.9490 -0.8840 3.7970 50 1 1.4102 -1.7493 3.5712 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000618887778.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:24:06 Heat of formation + Delta-G solvation = -54.247518 kcal Electronic energy + Delta-G solvation = -26857.615037 eV Core-core repulsion = 23304.238903 eV Total energy + Delta-G solvation = -3553.376134 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.87487 -39.88578 -37.40285 -37.35800 -35.71868 -34.27370 -32.54892 -31.78911 -31.38557 -29.36005 -27.41303 -26.36551 -25.22789 -24.25088 -23.97070 -22.95057 -20.95712 -20.41702 -19.78918 -18.91624 -18.41661 -17.80456 -16.94449 -16.74294 -16.26539 -16.01200 -15.75318 -15.68537 -15.19696 -15.15325 -14.97588 -14.69034 -14.57210 -14.28768 -14.21520 -13.94923 -13.46822 -13.27263 -13.03340 -12.88246 -12.78183 -12.62011 -12.42313 -12.33610 -12.23290 -12.11369 -11.93303 -11.78271 -11.64160 -11.42270 -11.31219 -11.13539 -10.92003 -10.72686 -10.70757 -10.00805 -9.46233 -9.08799 -8.25102 -6.27522 1.36489 1.38129 1.50292 1.79575 2.22876 2.38734 2.93110 3.01944 3.09865 3.82450 3.83610 3.84291 3.98250 4.08774 4.13508 4.24896 4.30291 4.38268 4.45239 4.49431 4.51018 4.54386 4.60245 4.69792 4.72307 4.77860 4.84649 4.87239 4.87770 4.92689 4.99429 5.03205 5.06928 5.11528 5.23426 5.34331 5.38848 5.40936 5.42561 5.55421 5.70134 5.70409 5.73957 5.80201 6.18734 6.21804 6.33445 6.37839 6.79847 6.96204 7.35610 7.69160 8.91977 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.032537 B = 0.002656 C = 0.002603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.365414 B =10538.372534 C =10752.580570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.067 4.067 3 H 0.048 0.952 4 C -0.005 4.005 5 C -0.518 4.518 6 H 0.031 0.969 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.951 3.049 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.245 1.245 13 C 0.072 3.928 14 N -0.546 5.546 15 C 0.062 3.938 16 C -0.123 4.123 17 C 0.172 3.828 18 N -0.621 5.621 19 C 0.103 3.897 20 C -0.148 4.148 21 C 0.105 3.895 22 N -0.740 5.740 23 C 0.696 3.304 24 O -0.631 6.631 25 C -0.123 4.123 26 C 0.063 3.937 27 H 0.051 0.949 28 H 0.026 0.974 29 H 0.045 0.955 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.264 0.736 33 H 0.034 0.966 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.107 0.893 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.064 0.936 43 H 0.127 0.873 44 H 0.103 0.897 45 H 0.075 0.925 46 H 0.414 0.586 47 H 0.075 0.925 48 H 0.065 0.935 49 H 0.045 0.955 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.301 4.338 34.933 35.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.043 4.043 5 C -0.556 4.556 6 H 0.049 0.951 7 C -0.196 4.196 8 N -0.597 5.597 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.168 1.168 13 C -0.056 4.056 14 N -0.270 5.270 15 C -0.067 4.067 16 C -0.162 4.162 17 C 0.069 3.931 18 N -0.357 5.357 19 C -0.019 4.019 20 C -0.186 4.186 21 C -0.019 4.019 22 N -0.397 5.397 23 C 0.397 3.603 24 O -0.513 6.513 25 C -0.162 4.162 26 C -0.065 4.065 27 H 0.070 0.930 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.125 0.875 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.083 0.917 43 H 0.146 0.854 44 H 0.121 0.879 45 H 0.094 0.906 46 H 0.251 0.749 47 H 0.094 0.906 48 H 0.083 0.917 49 H 0.063 0.937 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.689 4.193 34.316 34.768 hybrid contribution 0.401 -0.298 -0.980 1.100 sum 4.090 3.895 33.337 33.812 Atomic orbital electron populations 1.21438 0.95568 1.00555 0.99347 1.20904 0.96023 0.98490 0.93211 0.93390 1.19549 0.95924 0.95708 0.93073 1.21442 1.34240 1.08600 0.91350 0.95106 1.26034 0.97069 1.01121 0.95424 1.70085 1.49187 1.41695 0.98705 0.85646 0.79303 0.79298 0.78310 1.19359 1.21087 1.16841 1.22069 0.97291 0.97296 0.88936 1.61808 1.59533 1.03474 1.02229 1.22002 0.95852 0.90281 0.98552 1.21907 1.02406 0.97976 0.93864 1.20944 0.97133 0.90591 0.84472 1.47039 1.05366 1.59791 1.23487 1.21954 0.94748 0.96752 0.88406 1.22264 0.96251 0.96931 1.03165 1.21782 0.92396 1.00633 0.87066 1.45110 1.12270 1.59913 1.22448 1.15821 0.82533 0.79181 0.82774 1.90943 1.64632 1.58376 1.37302 1.21925 1.02089 0.95116 0.97083 1.22026 0.98789 0.96776 0.88879 0.93019 0.95495 0.93584 0.96353 0.96440 0.92686 0.94735 0.90638 0.92165 0.93958 0.91415 0.91926 0.87529 0.90425 0.88604 0.91697 0.85442 0.87920 0.90649 0.74937 0.90603 0.91676 0.93730 0.90655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 8.89 71.98 0.64 -4.17 16 2 C -0.07 -2.84 2.24 -10.79 -0.02 -2.87 16 3 H 0.05 2.14 6.30 -2.39 -0.02 2.12 16 4 C 0.00 -0.23 3.52 29.85 0.10 -0.12 16 5 C -0.52 -31.06 8.89 25.60 0.23 -30.83 16 6 H 0.03 2.05 7.32 -2.91 -0.02 2.03 16 7 C 0.00 -0.04 5.47 84.65 0.46 0.42 16 8 N -0.96 -62.09 13.96 21.45 0.30 -61.79 16 9 Si 0.95 45.77 27.47 68.60 1.88 47.65 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 12 H -0.24 -10.86 6.54 99.48 0.65 -10.21 16 13 C 0.07 2.41 4.37 86.30 0.38 2.79 16 14 N -0.55 -16.77 4.12 -896.36 -3.69 -20.46 16 15 C 0.06 1.78 5.30 86.33 0.46 2.24 16 16 C -0.12 -3.26 5.32 30.65 0.16 -3.10 16 17 C 0.17 3.58 2.59 45.07 0.12 3.70 16 18 N -0.62 -11.35 2.78 -816.22 -2.27 -13.62 16 19 C 0.10 0.90 6.48 86.57 0.56 1.46 16 20 C -0.15 -0.78 6.22 30.84 0.19 -0.59 16 21 C 0.10 0.67 7.20 86.48 0.62 1.30 16 22 N -0.74 -11.60 5.58 -479.85 -2.68 -14.28 16 23 C 0.70 16.50 7.61 179.45 1.37 17.86 16 24 O -0.63 -21.43 12.90 -3.99 -0.05 -21.48 16 25 C -0.12 -2.91 5.31 30.64 0.16 -2.75 16 26 C 0.06 1.55 5.46 86.32 0.47 2.02 16 27 H 0.05 2.13 7.84 -2.39 -0.02 2.12 16 28 H 0.03 1.29 6.82 -2.39 -0.02 1.27 16 29 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 31 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 32 H 0.26 16.01 8.31 -92.70 -0.77 15.24 16 33 H 0.03 1.11 8.12 -2.39 -0.02 1.09 16 34 H 0.08 2.44 7.98 -2.39 -0.02 2.42 16 35 H 0.06 2.03 6.16 -2.39 -0.01 2.01 16 36 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.06 2.18 6.02 -2.39 -0.01 2.17 16 39 H 0.11 1.65 7.77 -2.39 -0.02 1.63 16 40 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.10 0.58 7.91 -2.38 -0.02 0.56 16 42 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.13 -0.12 8.14 -2.39 -0.02 -0.14 16 44 H 0.10 0.24 8.14 -2.39 -0.02 0.23 16 45 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 46 H 0.41 6.13 8.88 -92.71 -0.82 5.31 16 47 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.06 2.07 5.96 -2.39 -0.01 2.06 16 49 H 0.04 0.93 8.14 -2.39 -0.02 0.92 16 50 H 0.07 1.81 8.01 -2.39 -0.02 1.79 16 Total: -1.00 -78.97 372.01 -0.58 -79.55 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.03 Total: 17.07 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 5.90 Total: -12.64 kcal Atomic # 7 Polarization: -101.81 SS G_CDS: -8.34 Total: -110.15 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.48 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 1.88 Total: 47.65 kcal Total: -78.97 -0.58 -79.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000618887778.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.303 kcal (2) G-P(sol) polarization free energy of solvation -78.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds