Wall clock time and date at job start Tue Mar 31 2020 10:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47481 * 2 1 4 4 C 1.52996 * 109.47139 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.46975 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.47318 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47384 * 184.99967 * 6 5 4 8 8 H 1.09000 * 109.47095 * 54.72936 * 7 6 5 9 9 C 1.53007 * 109.46953 * 294.72775 * 7 6 5 10 10 C 1.52990 * 109.47252 * 295.55510 * 9 7 6 11 11 C 1.50703 * 109.47032 * 174.73149 * 7 6 5 12 12 O 1.21273 * 120.00413 * 6.74488 * 11 7 6 13 13 N 1.34777 * 119.99579 * 186.74369 * 11 7 6 14 14 C 1.46929 * 120.63508 * 3.17692 * 13 11 7 15 15 C 1.53615 * 108.54630 * 126.36510 * 14 13 11 16 16 C 1.53039 * 109.24537 * 54.85507 * 15 14 13 17 17 C 1.50696 * 109.45333 * 178.49637 * 16 15 14 18 18 H 1.07999 * 120.00317 * 120.05707 * 17 16 15 19 19 C 1.37879 * 119.99942 * 300.06640 * 17 16 15 20 20 N 1.31514 * 120.00085 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 120.00111 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47185 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47658 * 119.99593 * 21 19 17 24 24 H 1.48498 * 109.47230 * 239.99876 * 21 19 17 25 25 C 1.53036 * 109.53678 * 298.51294 * 16 15 14 26 26 C 1.46927 * 120.62806 * 183.45101 * 13 11 7 27 27 H 1.09000 * 109.46905 * 59.99871 * 1 2 3 28 28 H 1.08996 * 109.47496 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47298 * 300.00080 * 1 2 3 30 30 H 1.09000 * 109.47298 * 239.99920 * 2 1 3 31 31 H 1.09000 * 109.46905 * 120.00128 * 2 1 3 32 32 H 1.09000 * 109.46919 * 59.99689 * 3 2 1 33 33 H 1.09000 * 109.47156 * 299.99975 * 3 2 1 34 34 H 1.09000 * 109.47570 * 59.99964 * 4 3 2 35 35 H 1.09000 * 109.46976 * 299.99962 * 4 3 2 36 36 H 1.09000 * 109.47276 * 59.99447 * 5 4 3 37 37 H 1.09000 * 109.46963 * 299.99634 * 5 4 3 38 38 H 1.09004 * 109.47201 * 64.99824 * 6 5 4 39 39 H 1.08995 * 109.47033 * 305.00055 * 6 5 4 40 40 H 1.09007 * 109.46688 * 55.55731 * 9 7 6 41 41 H 1.08997 * 109.46951 * 175.54999 * 9 7 6 42 42 H 1.09002 * 109.47333 * 65.01746 * 10 9 7 43 43 H 1.09003 * 109.47497 * 185.01475 * 10 9 7 44 44 H 1.08997 * 109.47144 * 305.01253 * 10 9 7 45 45 H 1.08999 * 109.58612 * 246.20380 * 14 13 11 46 46 H 1.09001 * 109.58066 * 6.62024 * 14 13 11 47 47 H 1.09006 * 109.63882 * 294.86199 * 15 14 13 48 48 H 1.09004 * 109.43267 * 174.72797 * 15 14 13 49 49 H 1.09007 * 109.45724 * 58.53102 * 16 15 14 50 50 H 0.96998 * 120.00140 * 180.02562 * 20 19 17 51 51 H 1.08998 * 109.49800 * 301.40932 * 25 16 15 52 52 H 1.09006 * 109.49768 * 181.31439 * 25 16 15 53 53 H 1.08996 * 109.59105 * 353.37060 * 26 13 11 54 54 H 1.08999 * 109.58914 * 113.66360 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0801 2.8849 0.0000 6 6 5.6101 2.8849 0.0000 7 6 6.1201 4.3218 0.1264 8 1 5.6818 4.7866 1.0095 9 6 5.7212 5.1159 -1.1192 10 6 6.4253 4.5301 -2.3446 11 6 7.6215 4.3123 0.2565 12 8 8.2349 3.2742 0.1267 13 7 8.2825 5.4575 0.5171 14 6 7.5490 6.7099 0.7458 15 6 8.0081 7.3077 2.0843 16 6 9.5304 7.4648 2.0709 17 6 9.9823 8.0852 3.3678 18 1 10.6677 7.5533 4.0109 19 6 9.5206 9.3319 3.7334 20 7 8.6862 9.9798 2.9501 21 14 10.0801 10.1006 5.3412 22 1 11.0115 9.1749 6.0347 23 1 10.7736 11.3836 5.0616 24 1 8.8998 10.3541 6.2059 25 6 10.1852 6.0913 1.9073 26 6 9.7506 5.4785 0.5722 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9331 0.9287 -0.8908 35 1 3.9337 0.9284 0.8891 36 1 3.7171 3.3982 0.8904 37 1 3.7164 3.3992 -0.8896 38 1 5.9734 2.4509 -0.9316 39 1 5.9734 2.2951 0.8415 40 1 4.6416 5.0567 -1.2574 41 1 6.0150 6.1582 -0.9950 42 1 6.0644 3.5168 -2.5213 43 1 6.2121 5.1487 -3.2165 44 1 7.5008 4.5074 -2.1695 45 1 7.7610 7.4102 -0.0622 46 1 6.4791 6.5050 0.7832 47 1 7.7179 6.6454 2.9000 48 1 7.5429 8.2834 2.2243 49 1 9.8218 8.1073 1.2400 50 1 8.3616 10.8570 3.2071 51 1 9.8745 5.4405 2.7246 52 1 11.2696 6.2012 1.9213 53 1 10.1338 4.4611 0.4953 54 1 10.1386 6.0784 -0.2510 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782054685.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:15 Heat of formation + Delta-G solvation = -104.197421 kcal Electronic energy + Delta-G solvation = -26674.570392 eV Core-core repulsion = 23222.568610 eV Total energy + Delta-G solvation = -3452.001781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 309.241 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.48177 -38.71381 -37.69008 -36.29435 -35.31236 -33.52751 -32.75585 -31.68750 -30.29557 -28.36854 -27.38340 -24.94863 -24.79461 -23.79536 -23.06230 -21.84349 -21.71511 -20.60622 -19.46624 -18.51187 -17.75073 -17.08021 -16.83910 -16.53634 -16.45921 -15.83196 -15.24655 -14.95621 -14.88949 -14.71282 -14.62280 -14.35772 -14.20636 -13.99784 -13.69504 -13.59663 -13.27789 -13.19584 -13.01096 -12.94618 -12.81859 -12.59182 -12.44876 -12.39211 -12.15824 -12.05108 -11.95010 -11.78813 -11.72876 -11.57512 -11.48309 -11.37461 -11.22117 -11.20128 -11.00144 -10.89015 -10.51454 -10.37003 -9.50728 -8.08492 -6.21428 1.39348 1.42793 1.52640 1.70402 2.13764 2.43510 3.17790 3.51007 3.72296 3.91730 4.03381 4.05568 4.10078 4.22697 4.24703 4.30760 4.34831 4.40329 4.45215 4.49161 4.53072 4.58097 4.63633 4.67899 4.73260 4.80514 4.84182 4.87995 4.89896 4.97608 4.98654 5.02847 5.07329 5.12943 5.17339 5.18298 5.22920 5.25627 5.28142 5.30647 5.36507 5.39194 5.43707 5.51353 5.55984 5.57479 5.62170 5.66596 5.98291 6.13347 6.39139 6.57279 6.87694 7.24413 7.46068 8.95023 Molecular weight = 309.24amu Principal moments of inertia in cm(-1) A = 0.017929 B = 0.002637 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.346335 B =10614.931557 C =11323.204479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.093 4.093 7 C -0.105 4.105 8 H 0.102 0.898 9 C -0.116 4.116 10 C -0.151 4.151 11 C 0.515 3.485 12 O -0.591 6.591 13 N -0.604 5.604 14 C 0.115 3.885 15 C -0.116 4.116 16 C 0.046 3.954 17 C -0.535 4.535 18 H 0.045 0.955 19 C 0.018 3.982 20 N -0.910 5.910 21 Si 0.948 3.052 22 H -0.274 1.274 23 H -0.280 1.280 24 H -0.279 1.279 25 C -0.113 4.113 26 C 0.116 3.884 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.063 0.937 39 H 0.046 0.954 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.026 0.974 45 H 0.066 0.934 46 H 0.102 0.898 47 H 0.026 0.974 48 H 0.081 0.919 49 H 0.004 0.996 50 H 0.262 0.738 51 H 0.038 0.962 52 H 0.061 0.939 53 H 0.076 0.924 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.875 -12.926 -9.406 21.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.154 4.154 4 C -0.156 4.156 5 C -0.150 4.150 6 C -0.131 4.131 7 C -0.126 4.126 8 H 0.120 0.880 9 C -0.153 4.153 10 C -0.208 4.208 11 C 0.305 3.695 12 O -0.472 6.472 13 N -0.336 5.336 14 C -0.007 4.007 15 C -0.155 4.155 16 C 0.027 3.973 17 C -0.573 4.573 18 H 0.063 0.937 19 C -0.181 4.181 20 N -0.549 5.549 21 Si 0.775 3.225 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.151 4.151 26 C -0.006 4.006 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.090 0.910 42 H 0.081 0.919 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.085 0.915 46 H 0.120 0.880 47 H 0.045 0.955 48 H 0.099 0.901 49 H 0.022 0.978 50 H 0.071 0.929 51 H 0.057 0.943 52 H 0.080 0.920 53 H 0.095 0.905 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.639 -13.285 -9.478 21.924 hybrid contribution 0.891 0.684 1.193 1.639 sum -13.749 -12.601 -8.285 20.407 Atomic orbital electron populations 1.21779 0.95476 1.01817 1.01939 1.21557 0.96230 0.96928 1.01824 1.21595 0.94714 0.96837 1.02256 1.21575 0.95781 0.96538 1.01718 1.21616 0.93137 0.97289 1.02950 1.21350 0.96271 0.93378 1.02053 1.21465 0.89602 0.99786 1.01718 0.87996 1.21677 1.02567 0.98971 0.92109 1.21797 0.99092 1.01656 0.98243 1.21238 0.91406 0.82163 0.74650 1.90601 1.70802 1.32328 1.53502 1.48283 1.07025 1.09446 1.68835 1.22083 0.96614 0.84132 0.97880 1.21883 0.98972 1.00468 0.94138 1.18601 0.92567 0.90967 0.95119 1.21561 1.27096 1.02339 1.06279 0.93680 1.25621 0.95224 0.97488 0.99772 1.69943 1.32870 1.14002 1.38127 0.85658 0.78176 0.78272 0.80439 1.19875 1.20626 1.20494 1.21842 0.99974 0.97723 0.95546 1.21538 0.80196 1.01153 0.97762 0.92480 0.92517 0.92775 0.92093 0.92484 0.92065 0.91512 0.92148 0.92862 0.91587 0.90329 0.91825 0.93529 0.87996 0.90981 0.91935 0.91122 0.95484 0.91524 0.88001 0.95503 0.90087 0.97817 0.92871 0.94266 0.92033 0.90546 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.02 16 2 C -0.13 -1.65 5.93 30.59 0.18 -1.47 16 3 C -0.12 -1.56 5.21 30.59 0.16 -1.40 16 4 C -0.12 -1.87 5.21 30.59 0.16 -1.71 16 5 C -0.11 -1.86 4.85 30.59 0.15 -1.71 16 6 C -0.09 -2.11 3.85 30.59 0.12 -1.99 16 7 C -0.10 -2.59 1.65 -11.54 -0.02 -2.61 16 8 H 0.10 2.38 7.19 -2.39 -0.02 2.36 16 9 C -0.12 -2.31 5.21 30.59 0.16 -2.15 16 10 C -0.15 -3.22 9.33 71.98 0.67 -2.54 16 11 C 0.52 17.35 5.44 87.66 0.48 17.82 16 12 O -0.59 -23.61 15.41 -3.01 -0.05 -23.65 16 13 N -0.60 -21.21 2.97 -818.07 -2.43 -23.63 16 14 C 0.11 3.90 5.08 86.50 0.44 4.34 16 15 C -0.12 -5.09 5.17 30.81 0.16 -4.93 16 16 C 0.05 2.22 2.06 -11.52 -0.02 2.20 16 17 C -0.53 -28.97 8.56 25.60 0.22 -28.75 16 18 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 19 C 0.02 0.97 5.30 84.66 0.45 1.42 16 20 N -0.91 -49.80 11.31 21.45 0.24 -49.56 16 21 Si 0.95 42.83 29.54 68.60 2.03 44.85 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 25 C -0.11 -4.74 5.30 30.67 0.16 -4.57 16 26 C 0.12 4.30 6.44 86.36 0.56 4.86 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.09 6.72 -2.39 -0.02 1.08 16 38 H 0.06 1.54 6.42 -2.38 -0.02 1.53 16 39 H 0.05 1.24 8.05 -2.39 -0.02 1.22 16 40 H 0.10 1.51 6.49 -2.38 -0.02 1.49 16 41 H 0.07 1.49 5.87 -2.39 -0.01 1.48 16 42 H 0.06 1.26 6.68 -2.39 -0.02 1.24 16 43 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.03 0.72 6.90 -2.39 -0.02 0.71 16 45 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.10 2.83 4.85 -2.39 -0.01 2.81 16 47 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 48 H 0.08 3.96 6.03 -2.38 -0.01 3.94 16 49 H 0.00 0.19 8.14 -2.38 -0.02 0.17 16 50 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 51 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 52 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 53 H 0.08 2.86 7.00 -2.39 -0.02 2.84 16 54 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -61.38 401.72 5.35 -56.02 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.83 Total: 20.19 kcal Atomic # 6 Polarization: -28.95 SS G_CDS: 4.73 Total: -24.22 kcal Atomic # 7 Polarization: -71.01 SS G_CDS: -2.18 Total: -73.19 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.05 Total: -23.65 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -61.38 5.35 -56.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782054685.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.174 kcal (2) G-P(sol) polarization free energy of solvation -61.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds