Wall clock time and date at job start Tue Mar 31 2020 09:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46849 * 111.00287 * 2 1 4 4 C 1.53046 * 109.50739 * 174.11163 * 3 2 1 5 5 C 1.53058 * 109.28105 * 59.09858 * 4 3 2 6 6 C 1.53035 * 109.51073 * 182.44424 * 5 4 3 7 7 C 1.53103 * 109.15450 * 297.50608 * 6 5 4 8 8 C 1.53042 * 109.28326 * 302.43277 * 7 6 5 9 9 N 1.46847 * 109.54256 * 59.20036 * 8 7 6 10 10 C 1.46898 * 110.99776 * 174.16026 * 9 8 7 11 11 C 1.50700 * 109.47620 * 293.95458 * 10 9 8 12 12 O 1.21287 * 119.99472 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00379 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00403 * 180.02562 * 13 11 10 15 15 C 1.50692 * 109.47138 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00570 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99694 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99764 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99756 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47541 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47025 * 120.00134 * 19 17 15 22 22 H 1.48506 * 109.47059 * 239.99830 * 19 17 15 23 23 C 1.46863 * 111.18312 * 298.24741 * 9 8 7 24 24 C 1.53043 * 109.28318 * 302.44402 * 5 4 3 25 25 C 1.46845 * 111.00037 * 235.74798 * 2 1 3 26 26 H 1.08997 * 109.47661 * 59.99827 * 1 2 3 27 27 H 1.09002 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47012 * 299.99831 * 1 2 3 29 29 H 1.09004 * 109.46021 * 54.09706 * 3 2 1 30 30 H 1.08997 * 109.46161 * 294.12415 * 3 2 1 31 31 H 1.09000 * 109.49771 * 299.15841 * 4 3 2 32 32 H 1.08994 * 109.53203 * 179.06481 * 4 3 2 33 33 H 1.08999 * 109.52104 * 57.40582 * 6 5 4 34 34 H 1.08996 * 109.51943 * 177.53588 * 6 5 4 35 35 H 1.08995 * 109.48479 * 182.50223 * 7 6 5 36 36 H 1.08999 * 109.51155 * 62.38323 * 7 6 5 37 37 H 1.09002 * 109.45766 * 299.18313 * 8 7 6 38 38 H 1.09000 * 109.45502 * 179.22200 * 8 7 6 39 39 H 1.09001 * 109.47026 * 53.95462 * 10 9 8 40 40 H 1.08995 * 109.47230 * 173.95598 * 10 9 8 41 41 H 0.97003 * 119.99684 * 0.02562 * 13 11 10 42 42 H 1.09001 * 109.46575 * 300.00053 * 14 13 11 43 43 H 1.09003 * 109.46871 * 59.99499 * 14 13 11 44 44 H 0.97005 * 119.99587 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.46437 * 181.66768 * 23 9 8 46 46 H 1.08999 * 109.45968 * 301.63576 * 23 9 8 47 47 H 1.09002 * 109.49769 * 177.48796 * 24 5 4 48 48 H 1.09004 * 109.49848 * 297.60091 * 24 5 4 49 49 H 1.09001 * 109.46608 * 305.89261 * 25 2 1 50 50 H 1.08999 * 109.46261 * 65.86337 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3337 0.1480 5 6 4.1192 0.5346 -1.0108 6 6 5.6366 0.4423 -0.8352 7 6 6.2348 1.8507 -0.8862 8 6 5.8579 2.5121 -2.2138 9 7 4.3957 2.5782 -2.3320 10 6 3.9978 3.3308 -3.5292 11 6 4.4107 4.7721 -3.3768 12 8 4.9807 5.1364 -2.3702 13 7 4.1474 5.6560 -4.3596 14 6 4.5492 7.0571 -4.2117 15 6 4.1409 7.8290 -5.4398 16 1 3.6333 7.3263 -6.2497 17 6 4.4155 9.1773 -5.5295 18 7 5.0341 9.7893 -4.5435 19 14 3.9100 10.1340 -7.0522 20 1 3.2348 9.2210 -8.0091 21 1 2.9771 11.2228 -6.6656 22 1 5.1156 10.7191 -7.6921 23 6 3.8021 1.2349 -2.3333 24 6 3.5182 -0.8729 -1.0195 25 6 1.9952 -0.7716 -1.1332 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.5628 1.9260 0.8325 30 1 1.7333 1.8605 -0.9379 31 1 3.7803 0.8577 1.0929 32 1 3.9108 2.3503 0.1314 33 1 5.8647 -0.0157 0.1272 34 1 6.0597 -0.1636 -1.6364 35 1 7.3200 1.7878 -0.8062 36 1 5.8420 2.4432 -0.0599 37 1 6.2628 1.9264 -3.0391 38 1 6.2709 3.5203 -2.2472 39 1 4.4856 2.9038 -4.4055 40 1 2.9162 3.2737 -3.6514 41 1 3.6918 5.3645 -5.1648 42 1 4.0615 7.4844 -3.3356 43 1 5.6309 7.1138 -4.0893 44 1 5.2269 10.7379 -4.6065 45 1 2.7216 1.3153 -2.4518 46 1 4.2157 0.6560 -3.1591 47 1 3.9103 -1.4307 -1.8699 48 1 3.7807 -1.3863 -0.0945 49 1 1.5629 -1.7722 -1.1233 50 1 1.7331 -0.2720 -2.0658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799178670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:29 Heat of formation + Delta-G solvation = -37.846022 kcal Electronic energy + Delta-G solvation = -26945.020324 eV Core-core repulsion = 23392.355412 eV Total energy + Delta-G solvation = -3552.664912 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64738 -38.85516 -37.23222 -34.44840 -33.94500 -32.39752 -32.12831 -30.93193 -28.53828 -28.13882 -26.46000 -25.12359 -23.51978 -23.40023 -22.57455 -21.82075 -20.40989 -19.58881 -18.23171 -17.02139 -16.33588 -15.87803 -15.40324 -15.39092 -15.07592 -15.04034 -14.62396 -14.50602 -14.32892 -14.26606 -13.79050 -13.62962 -13.07243 -12.80043 -12.66307 -12.54889 -12.39971 -12.29742 -12.10870 -11.93803 -11.61366 -11.45908 -11.31820 -11.24845 -10.99825 -10.93801 -10.83739 -10.74862 -10.33597 -10.30856 -10.12988 -10.04616 -9.37875 -8.94647 -8.73368 -8.43097 -8.13083 -7.83544 -6.17126 -4.23833 3.22673 3.29746 3.32692 3.41123 3.68604 3.79801 4.25990 4.42280 4.51958 4.62425 4.65308 4.95258 5.06224 5.10176 5.15273 5.17373 5.19061 5.24256 5.32081 5.39012 5.41889 5.44258 5.46891 5.52605 5.56368 5.62470 5.64611 5.65521 5.71855 5.77374 5.87237 5.90268 5.95396 6.00857 6.12878 6.24330 6.26821 6.40614 6.48245 6.91300 6.96183 7.07416 7.22195 7.34138 7.46992 7.52872 7.68261 7.97353 8.65208 8.79798 9.14652 9.43137 10.93101 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.002820 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.870074 B = 9925.712646 C =10574.853645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.098 4.098 5 C -0.052 4.052 6 C -0.109 4.109 7 C -0.115 4.115 8 C 0.051 3.949 9 N -0.513 5.513 10 C 0.036 3.964 11 C 0.499 3.501 12 O -0.537 6.537 13 N -0.716 5.716 14 C 0.252 3.748 15 C -0.542 4.542 16 H 0.063 0.937 17 C 0.063 3.937 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.064 3.936 24 C -0.105 4.105 25 C 0.055 3.945 26 H 0.023 0.977 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.022 0.978 38 H 0.098 0.902 39 H 0.055 0.945 40 H 0.094 0.906 41 H 0.389 0.611 42 H 0.026 0.974 43 H 0.025 0.975 44 H 0.265 0.735 45 H 0.072 0.928 46 H 0.029 0.971 47 H 0.064 0.936 48 H 0.073 0.927 49 H 0.070 0.930 50 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.661 -23.210 6.107 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.136 4.136 5 C -0.053 4.053 6 C -0.146 4.146 7 C -0.152 4.152 8 C -0.077 4.077 9 N -0.237 5.237 10 C -0.095 4.095 11 C 0.283 3.717 12 O -0.415 6.415 13 N -0.365 5.365 14 C 0.131 3.869 15 C -0.581 4.581 16 H 0.081 0.919 17 C -0.141 4.141 18 N -0.522 5.522 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.064 4.064 24 C -0.143 4.143 25 C -0.073 4.073 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.040 0.960 38 H 0.116 0.884 39 H 0.073 0.927 40 H 0.112 0.888 41 H 0.221 0.779 42 H 0.044 0.956 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.047 0.953 47 H 0.082 0.918 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.189 -22.699 7.726 24.340 hybrid contribution -0.555 0.438 -2.777 2.866 sum -4.744 -22.261 4.949 23.292 Atomic orbital electron populations 1.22339 0.87654 1.01677 1.00689 1.61960 1.07232 1.14567 1.43135 1.22129 0.96129 0.88146 1.00756 1.21572 0.93453 1.01625 0.96912 1.20537 0.95222 0.94341 0.95186 1.21626 0.94224 0.97338 1.01442 1.21573 0.99699 0.95518 0.98443 1.22274 0.86911 1.02401 0.96082 1.61522 1.10217 1.14405 1.37594 1.21981 1.01835 0.93431 0.92291 1.20287 0.80346 0.87069 0.84009 1.90627 1.42016 1.79703 1.29145 1.46461 1.59064 1.11830 1.19167 1.19070 0.95958 0.74503 0.97367 1.21268 1.39712 0.94209 1.02898 0.91919 1.24957 0.94820 0.97521 0.96759 1.69987 1.40095 1.10699 1.31466 0.86371 0.78327 0.79851 0.82414 1.19660 1.20791 1.20803 1.22223 0.99352 0.88725 0.96101 1.21624 0.94134 0.96280 1.02271 1.22103 0.95651 0.97891 0.91693 0.95796 0.91687 0.91415 0.91055 0.94311 0.91959 0.89347 0.91857 0.92528 0.91829 0.90573 0.95982 0.88353 0.92697 0.88750 0.77912 0.95572 0.95663 0.92511 0.90983 0.95311 0.91775 0.90862 0.91148 0.94856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.59 60.06 0.58 0.78 16 2 N -0.54 -5.34 4.91 -242.95 -1.19 -6.53 16 3 C 0.06 0.60 5.22 -3.83 -0.02 0.58 16 4 C -0.10 -1.08 4.40 -26.68 -0.12 -1.20 16 5 C -0.05 -0.53 0.51 -154.46 -0.08 -0.60 16 6 C -0.11 -1.08 4.79 -26.66 -0.13 -1.20 16 7 C -0.11 -1.36 5.74 -26.66 -0.15 -1.51 16 8 C 0.05 0.72 5.10 -3.83 -0.02 0.70 16 9 N -0.51 -7.14 3.64 -236.14 -0.86 -8.00 16 10 C 0.04 0.52 5.45 -4.98 -0.03 0.49 16 11 C 0.50 9.82 7.50 -10.99 -0.08 9.74 16 12 O -0.54 -12.62 14.35 5.55 0.08 -12.54 16 13 N -0.72 -14.96 5.55 -61.47 -0.34 -15.30 16 14 C 0.25 6.66 5.43 -5.20 -0.03 6.63 16 15 C -0.54 -14.71 9.28 -34.44 -0.32 -15.03 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.20 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.88 -26.10 13.29 55.43 0.74 -25.37 16 19 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 23 C 0.06 0.71 3.60 -3.86 -0.01 0.70 16 24 C -0.10 -0.90 4.88 -26.68 -0.13 -1.03 16 25 C 0.05 0.48 5.22 -3.83 -0.02 0.46 16 26 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 27 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 30 H 0.04 0.46 6.50 -51.93 -0.34 0.12 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.17 6.09 -51.93 -0.32 0.86 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 0.99 6.65 -51.93 -0.35 0.65 16 37 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.10 1.72 5.80 -51.93 -0.30 1.42 16 39 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 40 H 0.09 1.20 7.98 -51.93 -0.41 0.78 16 41 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.07 0.80 4.81 -51.93 -0.25 0.55 16 46 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 50 H 0.03 0.30 6.54 -51.93 -0.34 -0.04 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -31.05 373.50 -10.56 -41.62 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -8.93 Total: 3.52 kcal Atomic # 6 Polarization: 1.81 SS G_CDS: -0.66 Total: 1.15 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -1.66 Total: -55.20 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.08 Total: -12.54 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.05 -10.56 -41.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799178670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.770 kcal (2) G-P(sol) polarization free energy of solvation -31.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds