Wall clock time and date at job start Tue Mar 31 2020 09:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46849 * 111.00287 * 2 1 4 4 C 1.53046 * 109.50739 * 174.11163 * 3 2 1 5 5 C 1.53058 * 109.28105 * 59.09858 * 4 3 2 6 6 C 1.53035 * 109.51073 * 182.44424 * 5 4 3 7 7 C 1.53103 * 109.15450 * 297.50608 * 6 5 4 8 8 C 1.53042 * 109.28326 * 302.43277 * 7 6 5 9 9 N 1.46847 * 109.54256 * 59.20036 * 8 7 6 10 10 C 1.46898 * 110.99776 * 174.16026 * 9 8 7 11 11 C 1.50700 * 109.47620 * 293.95458 * 10 9 8 12 12 O 1.21287 * 119.99472 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00379 * 179.97438 * 11 10 9 14 14 C 1.46501 * 120.00403 * 180.02562 * 13 11 10 15 15 C 1.50692 * 109.47138 * 180.02562 * 14 13 11 16 16 H 1.07999 * 120.00570 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99694 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99764 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99756 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47541 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47025 * 120.00134 * 19 17 15 22 22 H 1.48506 * 109.47059 * 239.99830 * 19 17 15 23 23 C 1.46863 * 111.18312 * 298.24741 * 9 8 7 24 24 C 1.53043 * 109.28318 * 302.44402 * 5 4 3 25 25 C 1.46845 * 111.00037 * 235.74798 * 2 1 3 26 26 H 1.08997 * 109.47661 * 59.99827 * 1 2 3 27 27 H 1.09002 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47012 * 299.99831 * 1 2 3 29 29 H 1.09004 * 109.46021 * 54.09706 * 3 2 1 30 30 H 1.08997 * 109.46161 * 294.12415 * 3 2 1 31 31 H 1.09000 * 109.49771 * 299.15841 * 4 3 2 32 32 H 1.08994 * 109.53203 * 179.06481 * 4 3 2 33 33 H 1.08999 * 109.52104 * 57.40582 * 6 5 4 34 34 H 1.08996 * 109.51943 * 177.53588 * 6 5 4 35 35 H 1.08995 * 109.48479 * 182.50223 * 7 6 5 36 36 H 1.08999 * 109.51155 * 62.38323 * 7 6 5 37 37 H 1.09002 * 109.45766 * 299.18313 * 8 7 6 38 38 H 1.09000 * 109.45502 * 179.22200 * 8 7 6 39 39 H 1.09001 * 109.47026 * 53.95462 * 10 9 8 40 40 H 1.08995 * 109.47230 * 173.95598 * 10 9 8 41 41 H 0.97003 * 119.99684 * 0.02562 * 13 11 10 42 42 H 1.09001 * 109.46575 * 300.00053 * 14 13 11 43 43 H 1.09003 * 109.46871 * 59.99499 * 14 13 11 44 44 H 0.97005 * 119.99587 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.46437 * 181.66768 * 23 9 8 46 46 H 1.08999 * 109.45968 * 301.63576 * 23 9 8 47 47 H 1.09002 * 109.49769 * 177.48796 * 24 5 4 48 48 H 1.09004 * 109.49848 * 297.60091 * 24 5 4 49 49 H 1.09001 * 109.46608 * 305.89261 * 25 2 1 50 50 H 1.08999 * 109.46261 * 65.86337 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3337 0.1480 5 6 4.1192 0.5346 -1.0108 6 6 5.6366 0.4423 -0.8352 7 6 6.2348 1.8507 -0.8862 8 6 5.8579 2.5121 -2.2138 9 7 4.3957 2.5782 -2.3320 10 6 3.9978 3.3308 -3.5292 11 6 4.4107 4.7721 -3.3768 12 8 4.9807 5.1364 -2.3702 13 7 4.1474 5.6560 -4.3596 14 6 4.5492 7.0571 -4.2117 15 6 4.1409 7.8290 -5.4398 16 1 3.6333 7.3263 -6.2497 17 6 4.4155 9.1773 -5.5295 18 7 5.0341 9.7893 -4.5435 19 14 3.9100 10.1340 -7.0522 20 1 3.2348 9.2210 -8.0091 21 1 2.9771 11.2228 -6.6656 22 1 5.1156 10.7191 -7.6921 23 6 3.8021 1.2349 -2.3333 24 6 3.5182 -0.8729 -1.0195 25 6 1.9952 -0.7716 -1.1332 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.5628 1.9260 0.8325 30 1 1.7333 1.8605 -0.9379 31 1 3.7803 0.8577 1.0929 32 1 3.9108 2.3503 0.1314 33 1 5.8647 -0.0157 0.1272 34 1 6.0597 -0.1636 -1.6364 35 1 7.3200 1.7878 -0.8062 36 1 5.8420 2.4432 -0.0599 37 1 6.2628 1.9264 -3.0391 38 1 6.2709 3.5203 -2.2472 39 1 4.4856 2.9038 -4.4055 40 1 2.9162 3.2737 -3.6514 41 1 3.6918 5.3645 -5.1648 42 1 4.0615 7.4844 -3.3356 43 1 5.6309 7.1138 -4.0893 44 1 5.2269 10.7379 -4.6065 45 1 2.7216 1.3153 -2.4518 46 1 4.2157 0.6560 -3.1591 47 1 3.9103 -1.4307 -1.8699 48 1 3.7807 -1.3863 -0.0945 49 1 1.5629 -1.7722 -1.1233 50 1 1.7331 -0.2720 -2.0658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799178670.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:28 Heat of formation + Delta-G solvation = -60.384329 kcal Electronic energy + Delta-G solvation = -26945.997658 eV Core-core repulsion = 23392.355412 eV Total energy + Delta-G solvation = -3553.642247 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 309.216 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.58433 -40.35474 -38.23882 -36.13814 -35.18780 -34.34410 -33.11386 -31.72136 -30.12785 -29.05017 -28.05864 -25.92035 -24.94075 -24.26242 -23.87060 -22.99781 -21.42381 -21.13171 -19.25205 -18.72209 -17.46567 -17.42502 -16.87380 -16.59523 -16.29896 -16.02646 -15.96290 -15.56088 -15.40566 -15.23243 -15.06164 -14.75808 -14.31229 -14.07876 -13.99159 -13.93081 -13.49231 -13.31263 -13.23428 -13.08152 -12.88906 -12.81889 -12.66053 -12.34395 -12.25918 -12.22113 -11.99647 -11.88312 -11.72791 -11.46160 -11.23117 -10.96598 -10.92152 -10.81775 -10.52521 -9.79383 -9.19063 -9.17741 -8.30095 -6.46635 1.42124 1.43287 1.56725 1.81386 2.27044 2.46218 3.04781 3.05542 3.08261 3.67939 3.79581 3.83088 3.98178 4.16274 4.24016 4.27844 4.29594 4.34108 4.36124 4.42142 4.45697 4.50895 4.63935 4.67985 4.69548 4.74886 4.79819 4.87495 4.95684 5.01015 5.04049 5.06467 5.11001 5.14084 5.17032 5.23657 5.24446 5.34486 5.37533 5.49007 5.51682 5.55398 5.71002 5.84934 6.03003 6.16594 6.22182 6.23308 6.65112 6.96250 7.23187 7.54652 8.82326 Molecular weight = 309.22amu Principal moments of inertia in cm(-1) A = 0.021535 B = 0.002820 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.870074 B = 9925.712646 C =10574.853645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.551 5.551 3 C 0.061 3.939 4 C -0.093 4.093 5 C -0.050 4.050 6 C -0.101 4.101 7 C -0.111 4.111 8 C 0.054 3.946 9 N -0.531 5.531 10 C 0.050 3.950 11 C 0.495 3.505 12 O -0.581 6.581 13 N -0.711 5.711 14 C 0.270 3.730 15 C -0.555 4.555 16 H 0.083 0.917 17 C 0.002 3.998 18 N -0.931 5.931 19 Si 0.985 3.015 20 H -0.253 1.253 21 H -0.279 1.279 22 H -0.279 1.279 23 C 0.068 3.932 24 C -0.098 4.098 25 C 0.053 3.947 26 H 0.021 0.979 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.026 0.974 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.055 0.945 37 H 0.035 0.965 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.120 0.880 41 H 0.407 0.593 42 H -0.016 1.016 43 H -0.015 1.015 44 H 0.268 0.732 45 H 0.075 0.925 46 H 0.043 0.957 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.085 0.915 50 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.953 -25.905 4.198 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.276 5.276 3 C -0.067 4.067 4 C -0.131 4.131 5 C -0.051 4.051 6 C -0.139 4.139 7 C -0.149 4.149 8 C -0.074 4.074 9 N -0.256 5.256 10 C -0.081 4.081 11 C 0.281 3.719 12 O -0.461 6.461 13 N -0.362 5.362 14 C 0.147 3.853 15 C -0.592 4.592 16 H 0.102 0.898 17 C -0.197 4.197 18 N -0.570 5.570 19 Si 0.808 3.192 20 H -0.176 1.176 21 H -0.205 1.205 22 H -0.204 1.204 23 C -0.059 4.059 24 C -0.136 4.136 25 C -0.075 4.075 26 H 0.040 0.960 27 H 0.098 0.902 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.099 0.901 40 H 0.138 0.862 41 H 0.242 0.758 42 H 0.002 0.998 43 H 0.003 0.997 44 H 0.077 0.923 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.104 0.896 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -5.506 -25.453 5.799 26.679 hybrid contribution -0.134 1.262 -2.082 2.438 sum -5.641 -24.190 3.718 25.116 Atomic orbital electron populations 1.22382 0.86792 1.02618 1.00592 1.61977 1.08106 1.13613 1.43879 1.22014 0.95922 0.88958 0.99829 1.21459 0.93697 1.00219 0.97678 1.20543 0.95391 0.95135 0.93992 1.21583 0.93905 0.95789 1.02612 1.21531 1.00331 0.96578 0.96486 1.22144 0.87150 1.00318 0.97750 1.61463 1.10199 1.16304 1.37602 1.21891 1.03389 0.89225 0.93594 1.21324 0.78814 0.89091 0.82637 1.90617 1.43671 1.80919 1.30898 1.46198 1.59530 1.09926 1.20578 1.18477 0.93058 0.77673 0.96091 1.21653 1.39656 0.94723 1.03217 0.89849 1.26081 0.94471 0.98815 1.00335 1.70150 1.41463 1.11247 1.34128 0.85109 0.77970 0.78146 0.77976 1.17589 1.20479 1.20444 1.22261 0.99315 0.87150 0.97164 1.21581 0.93908 0.94942 1.03155 1.22181 0.95804 0.98392 0.91112 0.96014 0.90193 0.91455 0.91734 0.95540 0.91872 0.92210 0.90752 0.91137 0.90988 0.92581 0.94684 0.92613 0.90055 0.86227 0.75787 0.99755 0.99674 0.92274 0.90683 0.93839 0.90051 0.90664 0.89622 0.94996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.59 127.69 1.22 1.58 16 2 N -0.55 -9.79 4.91 -922.54 -4.53 -14.32 16 3 C 0.06 1.28 5.22 86.33 0.45 1.73 16 4 C -0.09 -2.01 4.40 30.63 0.13 -1.88 16 5 C -0.05 -0.90 0.51 -52.15 -0.03 -0.93 16 6 C -0.10 -1.79 4.79 30.64 0.15 -1.65 16 7 C -0.11 -2.62 5.74 30.64 0.18 -2.45 16 8 C 0.05 1.53 5.10 86.33 0.44 1.97 16 9 N -0.53 -14.40 3.64 -901.03 -3.28 -17.68 16 10 C 0.05 1.37 5.45 85.56 0.47 1.84 16 11 C 0.49 19.94 7.50 87.66 0.66 20.60 16 12 O -0.58 -28.97 14.35 -3.05 -0.04 -29.02 16 13 N -0.71 -30.27 5.55 -466.79 -2.59 -32.86 16 14 C 0.27 15.00 5.43 85.63 0.46 15.46 16 15 C -0.55 -30.37 9.28 25.60 0.24 -30.14 16 16 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 17 C 0.00 0.14 5.46 84.66 0.46 0.60 16 18 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 19 Si 0.98 42.50 29.54 68.60 2.03 44.53 16 20 H -0.25 -10.02 7.11 99.48 0.71 -9.32 16 21 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 23 C 0.07 1.36 3.60 86.30 0.31 1.67 16 24 C -0.10 -1.36 4.88 30.63 0.15 -1.21 16 25 C 0.05 0.77 5.22 86.33 0.45 1.22 16 26 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 27 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 28 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.41 8.12 -2.38 -0.02 1.39 16 30 H 0.03 0.62 6.50 -2.39 -0.02 0.60 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.06 1.65 6.09 -2.39 -0.01 1.64 16 33 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.06 1.54 6.65 -2.39 -0.02 1.52 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.06 2.06 5.80 -2.39 -0.01 2.05 16 39 H 0.08 1.86 8.12 -2.39 -0.02 1.84 16 40 H 0.12 2.73 7.98 -2.39 -0.02 2.71 16 41 H 0.41 14.19 8.32 -92.71 -0.77 13.42 16 42 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 43 H -0.01 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H 0.27 15.20 8.31 -92.70 -0.77 14.43 16 45 H 0.07 1.48 4.81 -2.39 -0.01 1.47 16 46 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 49 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 50 H 0.03 0.49 6.54 -2.39 -0.02 0.47 16 Total: -1.00 -71.13 373.50 -2.25 -73.38 By element: Atomic # 1 Polarization: 23.80 SS G_CDS: 0.14 Total: 23.94 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.75 Total: 8.42 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -10.12 Total: -121.25 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.04 Total: -29.02 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.13 -2.25 -73.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799178670.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.996 kcal (2) G-P(sol) polarization free energy of solvation -71.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds